Wall clock time and date at job start Tue Mar 31 2020 03:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00081 * 2 1 4 4 H 1.48497 * 109.46968 * 269.99573 * 3 2 1 5 5 H 1.48496 * 109.47062 * 29.99193 * 3 2 1 6 6 H 1.48496 * 109.47191 * 149.99643 * 3 2 1 7 7 C 1.37882 * 119.99977 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99941 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99765 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.46738 * 180.02562 * 9 7 2 11 11 C 1.34768 * 120.00227 * 90.00207 * 10 9 7 12 12 O 1.21287 * 120.00417 * 175.26266 * 11 10 9 13 13 C 1.50702 * 120.00112 * 355.26532 * 11 10 9 14 14 Cl 1.80300 * 109.47299 * 179.97438 * 13 11 10 15 15 C 1.39931 * 119.99921 * 270.00065 * 10 9 7 16 16 C 1.38895 * 120.06295 * 111.84857 * 15 10 9 17 17 C 1.38104 * 119.95407 * 179.72464 * 16 15 10 18 18 C 1.38284 * 120.08158 * 0.57737 * 17 16 15 19 19 C 1.38380 * 120.12744 * 359.70154 * 18 17 16 20 20 Cl 1.73603 * 119.97486 * 180.02562 * 19 18 17 21 21 C 1.38247 * 120.04530 * 359.97438 * 19 18 17 22 22 H 0.96996 * 119.99759 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.46932 * 60.00185 * 9 7 2 24 24 H 1.08994 * 109.47511 * 299.99664 * 9 7 2 25 25 H 1.09001 * 109.46783 * 59.99800 * 13 11 10 26 26 H 1.08994 * 109.46969 * 300.00568 * 13 11 10 27 27 H 1.07997 * 120.02569 * 0.02562 * 16 15 10 28 28 H 1.07998 * 119.95876 * 180.28017 * 17 16 15 29 29 H 1.08001 * 119.93167 * 179.72434 * 18 17 16 30 30 H 1.07997 * 120.04174 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6998 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2031 -3.6127 0.0018 11 6 2.6401 -4.1244 1.1694 12 8 3.3603 -5.1003 1.1723 13 6 2.2338 -3.4841 2.4718 14 17 2.9722 -4.3915 3.8437 15 6 2.6587 -4.1450 -1.2095 16 6 3.9849 -3.9790 -1.5874 17 6 4.4335 -4.5102 -2.7807 18 6 3.5612 -5.1968 -3.6052 19 6 2.2378 -5.3592 -3.2347 20 17 1.1463 -6.2225 -4.2726 21 6 1.7847 -4.8354 -2.0383 22 1 -0.4849 0.8400 -0.0004 23 1 0.6248 -2.5571 -0.8897 24 1 0.6241 -2.5568 0.8902 25 1 1.1480 -3.5064 2.5644 26 1 2.5789 -2.4504 2.4916 27 1 4.6660 -3.4391 -0.9464 28 1 5.4658 -4.3850 -3.0725 29 1 3.9136 -5.6073 -4.5399 30 1 0.7520 -4.9626 -1.7490 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003457878.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:11 Heat of formation + Delta-G solvation = -25.827302 kcal Electronic energy + Delta-G solvation = -18028.629238 eV Core-core repulsion = 14875.586404 eV Total energy + Delta-G solvation = -3153.042833 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 287.022 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.09692 -38.27309 -36.35041 -35.61042 -35.17209 -32.82822 -30.65391 -30.40687 -28.22343 -27.20322 -23.38429 -22.53811 -22.25990 -19.22013 -17.29128 -16.89950 -16.34718 -15.86509 -15.44144 -14.75386 -14.67928 -14.52088 -13.58848 -13.36653 -13.28582 -12.89406 -12.78876 -12.39488 -11.81621 -11.70482 -11.43813 -11.29138 -11.13970 -10.94122 -10.80843 -10.54097 -10.31088 -10.15460 -10.03251 -9.46323 -8.88276 -8.73303 -8.56046 -7.94479 -6.35928 -4.45328 1.38137 1.45957 2.21205 2.37960 2.96202 3.13800 3.21943 3.24130 3.60750 3.85483 4.19835 4.92562 4.98578 5.03082 5.16990 5.39141 5.41727 5.57551 5.66556 5.72812 5.92531 6.31030 6.44434 6.53069 6.63094 6.84516 6.94850 7.33019 7.57296 7.79826 7.87617 8.51287 8.66425 9.23899 10.70940 Molecular weight = 287.02amu Principal moments of inertia in cm(-1) A = 0.011052 B = 0.006706 C = 0.004843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2532.883701 B = 4174.487255 C = 5780.702668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.069 3.931 3 Si 0.899 3.101 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.548 4.548 8 H 0.064 0.936 9 C 0.235 3.765 10 N -0.559 5.559 11 C 0.513 3.487 12 O -0.534 6.534 13 C -0.046 4.046 14 Cl -0.159 7.159 15 C 0.189 3.811 16 C -0.101 4.101 17 C -0.100 4.100 18 C -0.123 4.123 19 C -0.025 4.025 20 Cl -0.079 7.079 21 C -0.114 4.114 22 H 0.268 0.732 23 H 0.044 0.956 24 H 0.044 0.956 25 H 0.122 0.878 26 H 0.136 0.864 27 H 0.128 0.872 28 H 0.132 0.868 29 H 0.130 0.870 30 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.367 -6.674 -2.911 8.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.135 4.135 3 Si 0.726 3.274 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.586 4.586 8 H 0.082 0.918 9 C 0.117 3.883 10 N -0.288 5.288 11 C 0.301 3.699 12 O -0.411 6.411 13 C -0.111 4.111 14 Cl -0.133 7.133 15 C 0.097 3.903 16 C -0.120 4.120 17 C -0.118 4.118 18 C -0.142 4.142 19 C -0.052 4.052 20 Cl -0.050 7.050 21 C -0.134 4.134 22 H 0.078 0.922 23 H 0.062 0.938 24 H 0.061 0.939 25 H 0.140 0.860 26 H 0.154 0.846 27 H 0.146 0.854 28 H 0.150 0.850 29 H 0.148 0.852 30 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 3.499 -7.185 -2.848 8.484 hybrid contribution 0.137 1.121 -0.129 1.136 sum 3.636 -6.064 -2.977 7.672 Atomic orbital electron populations 1.69906 1.06048 1.27741 1.48679 1.24932 0.94882 0.99414 0.94268 0.86472 0.79856 0.82614 0.78494 1.20362 1.20880 1.19589 1.21404 0.93709 0.90078 1.53419 0.91760 1.19690 0.87134 0.82061 0.99422 1.45899 1.45888 1.34928 1.02067 1.20337 0.80556 0.83709 0.85306 1.90723 1.37185 1.25879 1.87324 1.24295 1.02204 0.99347 0.85271 1.98696 1.86099 1.79334 1.49134 1.17336 0.92153 0.93816 0.86993 1.21375 0.95476 0.98709 0.96474 1.20911 0.99528 0.97527 0.93883 1.20940 0.91488 1.01082 1.00674 1.20602 0.91285 1.00237 0.93042 1.98346 1.64179 1.75696 1.66791 1.21072 1.00947 0.97889 0.93528 0.92201 0.93799 0.93858 0.86037 0.84584 0.85435 0.85049 0.85217 0.84846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.95 13.29 55.43 0.74 -22.21 16 2 C 0.07 1.71 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 19.44 29.54 -169.99 -5.02 14.42 16 4 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 7 C -0.55 -13.11 9.16 -34.44 -0.32 -13.43 16 8 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 9 C 0.24 5.11 4.88 -5.19 -0.03 5.09 16 10 N -0.56 -11.07 2.50 -114.74 -0.29 -11.35 16 11 C 0.51 9.96 7.57 -10.99 -0.08 9.88 16 12 O -0.53 -11.48 15.78 5.55 0.09 -11.39 16 13 C -0.05 -0.77 5.80 36.01 0.21 -0.56 16 14 Cl -0.16 -2.61 28.37 -51.86 -1.47 -4.08 16 15 C 0.19 3.56 4.74 -83.70 -0.40 3.16 16 16 C -0.10 -1.74 9.56 -39.39 -0.38 -2.11 16 17 C -0.10 -1.41 10.04 -39.61 -0.40 -1.81 16 18 C -0.12 -1.70 9.83 -39.51 -0.39 -2.09 16 19 C -0.02 -0.38 6.32 -39.53 -0.25 -0.63 16 20 Cl -0.08 -1.08 28.95 -51.86 -1.50 -2.58 16 21 C -0.11 -1.98 9.47 -39.36 -0.37 -2.35 16 22 H 0.27 6.64 8.31 -40.82 -0.34 6.31 16 23 H 0.04 1.03 7.86 -51.93 -0.41 0.62 16 24 H 0.04 0.93 6.47 -51.93 -0.34 0.60 16 25 H 0.12 1.84 7.26 -51.93 -0.38 1.46 16 26 H 0.14 2.27 7.91 -51.93 -0.41 1.86 16 27 H 0.13 2.20 8.06 -52.49 -0.42 1.78 16 28 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 29 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 30 H 0.13 2.24 8.06 -52.49 -0.42 1.82 16 LS Contribution 300.43 15.07 4.53 4.53 Total: -1.00 -26.86 300.43 -8.19 -35.05 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -2.77 Total: 0.85 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: -2.49 Total: -3.23 kcal Atomic # 7 Polarization: -34.02 SS G_CDS: 0.45 Total: -33.57 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.09 Total: -11.39 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.02 Total: 14.42 kcal Atomic # 17 Polarization: -3.69 SS G_CDS: -2.97 Total: -6.66 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -26.86 -8.19 -35.05 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003457878.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.223 kcal (2) G-P(sol) polarization free energy of solvation -26.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds