Wall clock time and date at job start Tue Mar 31 2020 03:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00081 * 2 1 4 4 H 1.48497 * 109.46968 * 269.99573 * 3 2 1 5 5 H 1.48496 * 109.47062 * 29.99193 * 3 2 1 6 6 H 1.48496 * 109.47191 * 149.99643 * 3 2 1 7 7 C 1.37882 * 119.99977 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99941 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99765 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.46738 * 180.02562 * 9 7 2 11 11 C 1.34768 * 120.00227 * 90.00207 * 10 9 7 12 12 O 1.21287 * 120.00417 * 175.26266 * 11 10 9 13 13 C 1.50702 * 120.00112 * 355.26532 * 11 10 9 14 14 Cl 1.80300 * 109.47299 * 179.97438 * 13 11 10 15 15 C 1.39931 * 119.99921 * 270.00065 * 10 9 7 16 16 C 1.38895 * 120.06295 * 111.84857 * 15 10 9 17 17 C 1.38104 * 119.95407 * 179.72464 * 16 15 10 18 18 C 1.38284 * 120.08158 * 0.57737 * 17 16 15 19 19 C 1.38380 * 120.12744 * 359.70154 * 18 17 16 20 20 Cl 1.73603 * 119.97486 * 180.02562 * 19 18 17 21 21 C 1.38247 * 120.04530 * 359.97438 * 19 18 17 22 22 H 0.96996 * 119.99759 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.46932 * 60.00185 * 9 7 2 24 24 H 1.08994 * 109.47511 * 299.99664 * 9 7 2 25 25 H 1.09001 * 109.46783 * 59.99800 * 13 11 10 26 26 H 1.08994 * 109.46969 * 300.00568 * 13 11 10 27 27 H 1.07997 * 120.02569 * 0.02562 * 16 15 10 28 28 H 1.07998 * 119.95876 * 180.28017 * 17 16 15 29 29 H 1.08001 * 119.93167 * 179.72434 * 18 17 16 30 30 H 1.07997 * 120.04174 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6998 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2031 -3.6127 0.0018 11 6 2.6401 -4.1244 1.1694 12 8 3.3603 -5.1003 1.1723 13 6 2.2338 -3.4841 2.4718 14 17 2.9722 -4.3915 3.8437 15 6 2.6587 -4.1450 -1.2095 16 6 3.9849 -3.9790 -1.5874 17 6 4.4335 -4.5102 -2.7807 18 6 3.5612 -5.1968 -3.6052 19 6 2.2378 -5.3592 -3.2347 20 17 1.1463 -6.2225 -4.2726 21 6 1.7847 -4.8354 -2.0383 22 1 -0.4849 0.8400 -0.0004 23 1 0.6248 -2.5571 -0.8897 24 1 0.6241 -2.5568 0.8902 25 1 1.1480 -3.5064 2.5644 26 1 2.5789 -2.4504 2.4916 27 1 4.6660 -3.4391 -0.9464 28 1 5.4658 -4.3850 -3.0725 29 1 3.9136 -5.6073 -4.5399 30 1 0.7520 -4.9626 -1.7490 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003457878.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:10 Heat of formation + Delta-G solvation = -38.310252 kcal Electronic energy + Delta-G solvation = -18029.170539 eV Core-core repulsion = 14875.586404 eV Total energy + Delta-G solvation = -3153.584135 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 287.022 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.53894 -39.61000 -37.56292 -36.95001 -36.72134 -34.63832 -31.95743 -31.70943 -29.73650 -28.83246 -25.12123 -23.85206 -23.56477 -20.64386 -18.80458 -18.63555 -17.85512 -17.19724 -16.91712 -16.31699 -16.05189 -15.95947 -14.87034 -14.69080 -14.55642 -14.48053 -14.24698 -13.98376 -13.54026 -13.10807 -12.80844 -12.68573 -12.67142 -12.42197 -12.18445 -11.93737 -11.83093 -11.79656 -11.49045 -11.00789 -10.62228 -10.27896 -9.81865 -9.40223 -8.24455 -6.39200 0.12509 0.21712 0.94599 1.09363 1.42273 1.43102 1.48038 1.54578 2.13693 2.40135 2.60703 3.07779 3.45896 3.85351 4.03759 4.06805 4.12728 4.31275 4.35281 4.45404 4.69186 4.86561 5.06312 5.14697 5.29110 5.35168 5.54940 5.66105 5.89478 5.96154 6.28874 6.70336 7.05256 7.33384 8.81542 Molecular weight = 287.02amu Principal moments of inertia in cm(-1) A = 0.011052 B = 0.006706 C = 0.004843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2532.883701 B = 4174.487255 C = 5780.702668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.028 3.972 3 Si 0.954 3.046 4 H -0.279 1.279 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.549 4.549 8 H 0.059 0.941 9 C 0.249 3.751 10 N -0.558 5.558 11 C 0.510 3.490 12 O -0.558 6.558 13 C -0.041 4.041 14 Cl -0.154 7.154 15 C 0.152 3.848 16 C -0.120 4.120 17 C -0.089 4.089 18 C -0.113 4.113 19 C -0.030 4.030 20 Cl -0.063 7.063 21 C -0.130 4.130 22 H 0.269 0.731 23 H 0.023 0.977 24 H 0.045 0.955 25 H 0.137 0.863 26 H 0.137 0.863 27 H 0.120 0.880 28 H 0.169 0.831 29 H 0.165 0.835 30 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.452 -6.762 -3.837 8.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.173 4.173 3 Si 0.779 3.221 4 H -0.205 1.205 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.588 4.588 8 H 0.077 0.923 9 C 0.130 3.870 10 N -0.286 5.286 11 C 0.299 3.701 12 O -0.436 6.436 13 C -0.106 4.106 14 Cl -0.127 7.127 15 C 0.061 3.939 16 C -0.139 4.139 17 C -0.108 4.108 18 C -0.131 4.131 19 C -0.057 4.057 20 Cl -0.035 7.035 21 C -0.150 4.150 22 H 0.078 0.922 23 H 0.041 0.959 24 H 0.063 0.937 25 H 0.155 0.845 26 H 0.155 0.845 27 H 0.138 0.862 28 H 0.186 0.814 29 H 0.183 0.817 30 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 4.590 -7.282 -3.779 9.401 hybrid contribution -0.190 1.061 0.077 1.080 sum 4.400 -6.221 -3.703 8.472 Atomic orbital electron populations 1.69990 1.07178 1.28401 1.49831 1.25580 0.95491 1.02127 0.94126 0.85610 0.78919 0.79331 0.78224 1.20530 1.20616 1.19049 1.21586 0.93520 0.91024 1.52647 0.92309 1.19358 0.87078 0.82178 0.98361 1.45796 1.45481 1.34375 1.02935 1.20715 0.80076 0.83391 0.85894 1.90696 1.38333 1.26945 1.87672 1.24267 1.03122 0.99007 0.84220 1.98696 1.86120 1.79271 1.48626 1.17676 0.93373 0.95646 0.87231 1.21504 0.94794 0.99740 0.97910 1.21320 1.01311 0.95828 0.92295 1.21372 0.90508 0.99670 1.01556 1.20772 0.92358 0.99948 0.92618 1.98350 1.63897 1.75209 1.66002 1.21102 1.00641 0.98757 0.94521 0.92159 0.95852 0.93724 0.84465 0.84468 0.86191 0.81355 0.81719 0.85459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.54 13.29 21.45 0.28 -47.25 16 2 C 0.03 1.38 5.46 84.66 0.46 1.85 16 3 Si 0.95 39.47 29.54 68.60 2.03 41.49 16 4 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 6 H -0.27 -10.70 7.11 99.48 0.71 -10.00 16 7 C -0.55 -26.39 9.16 25.60 0.23 -26.16 16 8 H 0.06 2.85 7.81 -2.91 -0.02 2.82 16 9 C 0.25 11.04 4.88 85.63 0.42 11.46 16 10 N -0.56 -22.43 2.50 -635.32 -1.59 -24.02 16 11 C 0.51 19.96 7.57 87.66 0.66 20.62 16 12 O -0.56 -24.10 15.78 -3.05 -0.05 -24.15 16 13 C -0.04 -1.36 5.80 71.24 0.41 -0.95 16 14 Cl -0.15 -4.94 28.37 -2.72 -0.08 -5.02 16 15 C 0.15 5.77 4.74 38.15 0.18 5.96 16 16 C -0.12 -4.07 9.56 22.40 0.21 -3.85 16 17 C -0.09 -2.31 10.04 22.25 0.22 -2.08 16 18 C -0.11 -2.79 9.83 22.31 0.22 -2.57 16 19 C -0.03 -0.87 6.32 22.31 0.14 -0.73 16 20 Cl -0.06 -1.62 28.95 -2.72 -0.08 -1.70 16 21 C -0.13 -4.52 9.47 22.41 0.21 -4.31 16 22 H 0.27 13.34 8.31 -92.71 -0.77 12.57 16 23 H 0.02 1.13 7.86 -2.39 -0.02 1.11 16 24 H 0.04 1.95 6.47 -2.39 -0.02 1.94 16 25 H 0.14 4.09 7.26 -2.39 -0.02 4.07 16 26 H 0.14 4.54 7.91 -2.39 -0.02 4.52 16 27 H 0.12 4.15 8.06 -2.91 -0.02 4.13 16 28 H 0.17 3.05 8.06 -2.91 -0.02 3.02 16 29 H 0.17 2.92 8.06 -2.91 -0.02 2.89 16 30 H 0.13 4.42 8.06 -2.91 -0.02 4.39 16 Total: -1.00 -56.61 300.43 5.06 -51.55 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: 1.16 Total: 9.87 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: 3.38 Total: -0.77 kcal Atomic # 7 Polarization: -69.97 SS G_CDS: -1.31 Total: -71.28 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: -0.05 Total: -24.15 kcal Atomic # 14 Polarization: 39.47 SS G_CDS: 2.03 Total: 41.49 kcal Atomic # 17 Polarization: -6.57 SS G_CDS: -0.16 Total: -6.72 kcal Total: -56.61 5.06 -51.55 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003457878.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.240 kcal (2) G-P(sol) polarization free energy of solvation -56.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds