Wall clock time and date at job start Tue Mar 31 2020 03:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47356 * 2 1 4 4 N 1.46904 * 109.47308 * 119.99885 * 2 1 3 5 5 C 1.46899 * 111.00029 * 275.00154 * 4 2 1 6 6 C 1.52997 * 109.47254 * 179.97438 * 5 4 2 7 7 C 1.50697 * 109.47466 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99890 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00428 * 179.97438 * 7 6 5 10 10 N 1.31519 * 119.99563 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00432 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.46616 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.47104 * 119.99966 * 11 9 7 14 14 H 1.48489 * 109.47200 * 240.00246 * 11 9 7 15 15 C 1.50695 * 109.47261 * 239.99641 * 2 1 3 16 16 C 1.38245 * 119.99726 * 264.72615 * 15 2 1 17 17 C 1.38198 * 120.02856 * 179.72211 * 16 15 2 18 18 C 1.38383 * 120.00865 * 0.55201 * 17 16 15 19 19 Cl 1.73609 * 120.00373 * 179.74684 * 18 17 16 20 20 C 1.38307 * 119.98980 * 359.72454 * 18 17 16 21 21 C 1.38342 * 119.99141 * 84.99784 * 15 2 1 22 22 Cl 1.73601 * 120.00627 * 359.97438 * 21 15 2 23 23 H 1.09004 * 109.47538 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46997 * 300.00072 * 1 2 3 25 25 H 1.08999 * 109.47404 * 60.00168 * 1 2 3 26 26 H 1.00908 * 110.99583 * 38.95067 * 4 2 1 27 27 H 1.09002 * 109.47043 * 299.99792 * 5 4 2 28 28 H 1.09001 * 109.47354 * 59.99854 * 5 4 2 29 29 H 1.09002 * 109.47153 * 300.00004 * 6 5 4 30 30 H 1.08998 * 109.47533 * 59.99633 * 6 5 4 31 31 H 0.97002 * 119.99731 * 180.02562 * 10 9 7 32 32 H 1.08002 * 119.98370 * 359.97438 * 16 15 2 33 33 H 1.07991 * 119.99862 * 180.25494 * 17 16 15 34 34 H 1.08001 * 120.01302 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0824 0.2226 2.3469 6 6 2.5950 -0.5331 3.5745 7 6 2.6600 0.4058 4.7515 8 1 2.3648 1.4382 4.6356 9 6 3.0954 -0.0534 5.9765 10 7 3.4544 -1.3107 6.1176 11 14 3.1767 1.1106 7.4352 12 1 2.7223 2.4610 7.0168 13 1 2.2966 0.6068 8.5201 14 1 4.5750 1.1891 7.9285 15 6 2.0323 -0.7105 -1.2304 16 6 2.3664 -2.0504 -1.1667 17 6 2.8217 -2.7040 -2.2961 18 6 2.9543 -2.0146 -3.4886 19 17 3.5325 -2.8342 -4.9056 20 6 2.6255 -0.6726 -3.5515 21 6 2.1643 -0.0202 -2.4220 22 17 1.7507 1.6640 -2.5002 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.4494 -1.4979 1.4101 27 1 2.7588 1.0462 2.1182 28 1 1.0870 0.6163 2.5526 29 1 1.9183 -1.3565 3.8030 30 1 3.5903 -0.9272 3.3692 31 1 3.7603 -1.6339 6.9796 32 1 2.2678 -2.5876 -0.2350 33 1 3.0787 -3.7517 -2.2468 34 1 2.7284 -0.1343 -4.4821 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020050059.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:38 Heat of formation + Delta-G solvation = -4.559718 kcal Electronic energy + Delta-G solvation = -17582.753108 eV Core-core repulsion = 14566.465601 eV Total energy + Delta-G solvation = -3016.287507 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 287.054 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.86429 -37.18289 -36.67990 -36.17068 -33.44995 -31.69697 -31.05483 -29.40556 -27.86573 -24.43809 -23.59646 -22.79812 -20.65630 -20.57196 -17.53299 -16.47508 -16.03310 -15.73284 -14.98917 -14.48192 -14.36781 -14.13575 -13.97771 -13.93373 -13.07149 -12.65145 -12.54516 -12.39667 -12.16016 -12.02892 -11.61032 -11.29096 -11.17154 -11.14252 -11.04226 -10.96204 -10.72573 -10.52389 -10.08580 -9.44565 -9.16956 -9.07012 -8.69476 -8.38196 -7.94464 -6.02315 -4.04761 0.85612 0.99086 1.68180 2.14814 3.29847 3.33059 3.37493 3.41308 4.31784 4.47987 4.61882 4.74425 4.88338 5.11530 5.19523 5.24355 5.34105 5.42198 5.60358 5.63389 5.83464 5.87526 6.04643 6.10634 6.28367 6.30226 6.40569 6.48419 6.92664 7.37753 7.67091 7.75354 7.87856 8.03778 8.40252 9.02562 9.59339 11.09103 Molecular weight = 287.05amu Principal moments of inertia in cm(-1) A = 0.023877 B = 0.003324 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.378238 B = 8421.220213 C = 9175.304030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.114 3.886 3 H 0.094 0.906 4 N -0.684 5.684 5 C 0.067 3.933 6 C 0.025 3.975 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.058 3.942 10 N -0.893 5.893 11 Si 0.892 3.108 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.284 1.284 15 C -0.046 4.046 16 C -0.070 4.070 17 C -0.106 4.106 18 C -0.033 4.033 19 Cl -0.069 7.069 20 C -0.106 4.106 21 C -0.026 4.026 22 Cl -0.060 7.060 23 H 0.058 0.942 24 H 0.065 0.935 25 H 0.060 0.940 26 H 0.338 0.662 27 H 0.059 0.941 28 H 0.019 0.981 29 H 0.014 0.986 30 H 0.025 0.975 31 H 0.260 0.740 32 H 0.150 0.850 33 H 0.138 0.862 34 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.162 -0.920 -21.023 21.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.003 3.997 3 H 0.112 0.888 4 N -0.314 5.314 5 C -0.061 4.061 6 C -0.012 4.012 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.143 4.143 10 N -0.532 5.532 11 Si 0.720 3.280 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.210 1.210 15 C -0.048 4.048 16 C -0.089 4.089 17 C -0.125 4.125 18 C -0.060 4.060 19 Cl -0.040 7.040 20 C -0.125 4.125 21 C -0.054 4.054 22 Cl -0.031 7.031 23 H 0.077 0.923 24 H 0.084 0.916 25 H 0.079 0.921 26 H 0.156 0.844 27 H 0.078 0.922 28 H 0.037 0.963 29 H 0.032 0.968 30 H 0.044 0.956 31 H 0.070 0.930 32 H 0.167 0.833 33 H 0.156 0.844 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -3.412 -0.870 -21.172 21.463 hybrid contribution -0.776 0.750 0.890 1.399 sum -4.187 -0.119 -20.282 20.710 Atomic orbital electron populations 1.22442 0.95919 1.02383 1.02683 1.20509 0.92898 0.97906 0.88400 0.88809 1.60715 1.56114 1.10363 1.04192 1.22202 0.98465 0.95206 0.90234 1.19068 0.97030 0.95303 0.89803 1.21200 1.43923 0.96405 0.94476 0.92701 1.24998 0.95361 0.95104 0.98886 1.69981 1.44524 1.14338 1.24366 0.86538 0.77692 0.81144 0.82640 1.19760 1.21041 1.20964 1.19965 0.97182 0.94141 0.93498 1.21041 0.96209 0.93301 0.98314 1.21209 0.99555 1.00850 0.90908 1.20700 1.03580 0.92698 0.89011 1.98371 1.87340 1.78752 1.39522 1.20765 1.00469 0.92899 0.98370 1.20596 1.03983 0.86123 0.94668 1.98372 1.91960 1.14385 1.98400 0.92282 0.91577 0.92110 0.84418 0.92216 0.96266 0.96778 0.95614 0.93038 0.83267 0.84393 0.84222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.12 9.14 37.15 0.34 -1.78 16 2 C 0.11 1.56 2.31 -68.87 -0.16 1.40 16 3 H 0.09 1.38 6.78 -51.93 -0.35 1.03 16 4 N -0.68 -11.17 5.24 -107.96 -0.57 -11.74 16 5 C 0.07 1.33 5.42 -3.83 -0.02 1.31 16 6 C 0.03 0.64 5.23 -27.89 -0.15 0.49 16 7 C -0.52 -14.54 9.11 -34.44 -0.31 -14.85 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 10 N -0.89 -26.56 13.29 55.43 0.74 -25.82 16 11 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 12 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 14 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 15 C -0.05 -0.59 5.06 -104.58 -0.53 -1.12 16 16 C -0.07 -0.83 9.32 -39.59 -0.37 -1.20 16 17 C -0.11 -1.13 9.83 -39.54 -0.39 -1.52 16 18 C -0.03 -0.35 6.32 -39.50 -0.25 -0.60 16 19 Cl -0.07 -0.67 28.96 -51.86 -1.50 -2.17 16 20 C -0.11 -1.14 9.62 -39.51 -0.38 -1.52 16 21 C -0.03 -0.31 6.31 -39.50 -0.25 -0.56 16 22 Cl -0.06 -0.68 27.16 -51.86 -1.41 -2.09 16 23 H 0.06 0.67 8.13 -51.93 -0.42 0.24 16 24 H 0.07 0.84 7.45 -51.93 -0.39 0.46 16 25 H 0.06 0.68 7.90 -51.93 -0.41 0.27 16 26 H 0.34 5.18 7.90 -39.29 -0.31 4.87 16 27 H 0.06 1.22 8.06 -51.93 -0.42 0.81 16 28 H 0.02 0.38 7.44 -51.93 -0.39 -0.01 16 29 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 32 H 0.15 1.73 6.88 -52.49 -0.36 1.37 16 33 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 34 H 0.14 1.29 8.06 -52.49 -0.42 0.86 16 LS Contribution 317.63 15.07 4.79 4.79 Total: -1.00 -29.00 317.63 -9.82 -38.81 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -4.28 Total: 0.17 kcal Atomic # 6 Polarization: -15.84 SS G_CDS: -2.56 Total: -18.41 kcal Atomic # 7 Polarization: -37.73 SS G_CDS: 0.17 Total: -37.56 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 17 Polarization: -1.35 SS G_CDS: -2.91 Total: -4.26 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.00 -9.82 -38.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020050059.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.253 kcal (2) G-P(sol) polarization free energy of solvation -28.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds