Wall clock time and date at job start Tue Mar 31 2020 03:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47356 * 2 1 4 4 N 1.46904 * 109.47308 * 119.99885 * 2 1 3 5 5 C 1.46899 * 111.00029 * 275.00154 * 4 2 1 6 6 C 1.52997 * 109.47254 * 179.97438 * 5 4 2 7 7 C 1.50697 * 109.47466 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99890 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00428 * 179.97438 * 7 6 5 10 10 N 1.31519 * 119.99563 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00432 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.46616 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.47104 * 119.99966 * 11 9 7 14 14 H 1.48489 * 109.47200 * 240.00246 * 11 9 7 15 15 C 1.50695 * 109.47261 * 239.99641 * 2 1 3 16 16 C 1.38245 * 119.99726 * 264.72615 * 15 2 1 17 17 C 1.38198 * 120.02856 * 179.72211 * 16 15 2 18 18 C 1.38383 * 120.00865 * 0.55201 * 17 16 15 19 19 Cl 1.73609 * 120.00373 * 179.74684 * 18 17 16 20 20 C 1.38307 * 119.98980 * 359.72454 * 18 17 16 21 21 C 1.38342 * 119.99141 * 84.99784 * 15 2 1 22 22 Cl 1.73601 * 120.00627 * 359.97438 * 21 15 2 23 23 H 1.09004 * 109.47538 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46997 * 300.00072 * 1 2 3 25 25 H 1.08999 * 109.47404 * 60.00168 * 1 2 3 26 26 H 1.00908 * 110.99583 * 38.95067 * 4 2 1 27 27 H 1.09002 * 109.47043 * 299.99792 * 5 4 2 28 28 H 1.09001 * 109.47354 * 59.99854 * 5 4 2 29 29 H 1.09002 * 109.47153 * 300.00004 * 6 5 4 30 30 H 1.08998 * 109.47533 * 59.99633 * 6 5 4 31 31 H 0.97002 * 119.99731 * 180.02562 * 10 9 7 32 32 H 1.08002 * 119.98370 * 359.97438 * 16 15 2 33 33 H 1.07991 * 119.99862 * 180.25494 * 17 16 15 34 34 H 1.08001 * 120.01302 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0824 0.2226 2.3469 6 6 2.5950 -0.5331 3.5745 7 6 2.6600 0.4058 4.7515 8 1 2.3648 1.4382 4.6356 9 6 3.0954 -0.0534 5.9765 10 7 3.4544 -1.3107 6.1176 11 14 3.1767 1.1106 7.4352 12 1 2.7223 2.4610 7.0168 13 1 2.2966 0.6068 8.5201 14 1 4.5750 1.1891 7.9285 15 6 2.0323 -0.7105 -1.2304 16 6 2.3664 -2.0504 -1.1667 17 6 2.8217 -2.7040 -2.2961 18 6 2.9543 -2.0146 -3.4886 19 17 3.5325 -2.8342 -4.9056 20 6 2.6255 -0.6726 -3.5515 21 6 2.1643 -0.0202 -2.4220 22 17 1.7507 1.6640 -2.5002 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.4494 -1.4979 1.4101 27 1 2.7588 1.0462 2.1182 28 1 1.0870 0.6163 2.5526 29 1 1.9183 -1.3565 3.8030 30 1 3.5903 -0.9272 3.3692 31 1 3.7603 -1.6339 6.9796 32 1 2.2678 -2.5876 -0.2350 33 1 3.0787 -3.7517 -2.2468 34 1 2.7284 -0.1343 -4.4821 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020050059.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:37 Heat of formation + Delta-G solvation = -19.758506 kcal Electronic energy + Delta-G solvation = -17583.412177 eV Core-core repulsion = 14566.465601 eV Total energy + Delta-G solvation = -3016.946576 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 287.054 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.79561 -38.23661 -37.65662 -37.13562 -35.34695 -33.26991 -31.92810 -30.68996 -29.30503 -26.16958 -24.66185 -23.85692 -22.38700 -21.64536 -18.53041 -18.42022 -17.11120 -16.87854 -16.38542 -16.16352 -15.50350 -15.24927 -15.04140 -14.91761 -14.29305 -14.23445 -13.91086 -13.57938 -13.36315 -13.01960 -12.90790 -12.85369 -12.69539 -12.37629 -12.22400 -12.04517 -11.92793 -11.91911 -11.72177 -11.36179 -11.20595 -10.55335 -9.94592 -9.62019 -9.29399 -8.19152 -6.29656 -0.03985 0.11389 0.82409 1.28134 1.41052 1.41811 1.54557 2.40893 2.43954 3.14828 3.19476 3.70217 3.76380 3.99365 4.14099 4.18998 4.28871 4.45143 4.53803 4.62423 4.68623 4.77661 4.87703 4.98913 5.08451 5.13937 5.21859 5.30445 5.48905 5.59250 5.71118 5.80928 6.13881 6.27040 6.52951 6.87927 7.39497 8.92959 Molecular weight = 287.05amu Principal moments of inertia in cm(-1) A = 0.023877 B = 0.003324 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.378238 B = 8421.220213 C = 9175.304030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.118 3.882 3 H 0.084 0.916 4 N -0.685 5.685 5 C 0.087 3.913 6 C 0.033 3.967 7 C -0.543 4.543 8 H 0.059 0.941 9 C 0.002 3.998 10 N -0.930 5.930 11 Si 0.963 3.037 12 H -0.263 1.263 13 H -0.278 1.278 14 H -0.279 1.279 15 C -0.059 4.059 16 C -0.079 4.079 17 C -0.104 4.104 18 C -0.035 4.035 19 Cl -0.057 7.057 20 C -0.104 4.104 21 C -0.033 4.033 22 Cl -0.058 7.058 23 H 0.067 0.933 24 H 0.058 0.942 25 H 0.072 0.928 26 H 0.344 0.656 27 H 0.054 0.946 28 H 0.025 0.975 29 H -0.005 1.005 30 H -0.005 1.005 31 H 0.263 0.737 32 H 0.148 0.852 33 H 0.156 0.844 34 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.506 -0.368 -21.851 22.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.008 3.992 3 H 0.102 0.898 4 N -0.316 5.316 5 C -0.042 4.042 6 C -0.005 4.005 7 C -0.581 4.581 8 H 0.077 0.923 9 C -0.196 4.196 10 N -0.570 5.570 11 Si 0.788 3.212 12 H -0.187 1.187 13 H -0.204 1.204 14 H -0.205 1.205 15 C -0.061 4.061 16 C -0.097 4.097 17 C -0.122 4.122 18 C -0.062 4.062 19 Cl -0.029 7.029 20 C -0.123 4.123 21 C -0.060 4.060 22 Cl -0.029 7.029 23 H 0.086 0.914 24 H 0.077 0.923 25 H 0.090 0.910 26 H 0.162 0.838 27 H 0.072 0.928 28 H 0.043 0.957 29 H 0.014 0.986 30 H 0.013 0.987 31 H 0.072 0.928 32 H 0.166 0.834 33 H 0.174 0.826 34 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -3.766 -0.315 -22.024 22.346 hybrid contribution -0.646 0.522 1.053 1.341 sum -4.412 0.208 -20.971 21.431 Atomic orbital electron populations 1.22372 0.94546 1.03033 1.02845 1.20461 0.94001 0.97218 0.87564 0.89765 1.60574 1.57168 1.10098 1.03789 1.21775 0.98164 0.94732 0.89540 1.18906 0.95028 0.94834 0.91699 1.21643 1.43825 0.97009 0.95633 0.92283 1.25926 0.94862 0.96774 1.02060 1.70105 1.45354 1.16267 1.25301 0.85423 0.77823 0.79197 0.78746 1.18656 1.20352 1.20503 1.19878 0.98377 0.94573 0.93259 1.21085 0.96698 0.93150 0.98812 1.21394 0.98691 1.01701 0.90439 1.20806 1.03183 0.92800 0.89437 1.98378 1.87148 1.78503 1.38826 1.20949 0.99692 0.93054 0.98622 1.20641 1.04330 0.86295 0.94750 1.98371 1.91961 1.14195 1.98388 0.91416 0.92318 0.90952 0.83753 0.92761 0.95730 0.98646 0.98679 0.92797 0.83439 0.82611 0.82664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.90 9.14 71.98 0.66 -3.24 16 2 C 0.12 3.16 2.31 44.16 0.10 3.26 16 3 H 0.08 2.43 6.78 -2.39 -0.02 2.41 16 4 N -0.69 -22.38 5.24 -495.47 -2.60 -24.98 16 5 C 0.09 3.49 5.42 86.30 0.47 3.95 16 6 C 0.03 1.70 5.23 29.85 0.16 1.86 16 7 C -0.54 -30.55 9.11 25.60 0.23 -30.32 16 8 H 0.06 3.20 7.74 -2.91 -0.02 3.17 16 9 C 0.00 0.10 5.46 84.65 0.46 0.57 16 10 N -0.93 -56.11 13.29 21.45 0.28 -55.83 16 11 Si 0.96 43.96 29.54 68.60 2.03 45.99 16 12 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 13 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 14 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 15 C -0.06 -1.45 5.06 -19.84 -0.10 -1.55 16 16 C -0.08 -1.80 9.32 22.26 0.21 -1.59 16 17 C -0.10 -2.04 9.83 22.29 0.22 -1.82 16 18 C -0.04 -0.69 6.32 22.32 0.14 -0.55 16 19 Cl -0.06 -1.00 28.96 -2.72 -0.08 -1.08 16 20 C -0.10 -2.06 9.62 22.31 0.21 -1.85 16 21 C -0.03 -0.74 6.31 22.32 0.14 -0.60 16 22 Cl -0.06 -1.25 27.16 -2.72 -0.07 -1.32 16 23 H 0.07 1.44 8.13 -2.39 -0.02 1.42 16 24 H 0.06 1.44 7.45 -2.39 -0.02 1.42 16 25 H 0.07 1.50 7.90 -2.39 -0.02 1.48 16 26 H 0.34 10.55 7.90 -89.69 -0.71 9.84 16 27 H 0.05 2.23 8.06 -2.39 -0.02 2.22 16 28 H 0.02 0.96 7.44 -2.39 -0.02 0.94 16 29 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 30 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 31 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 32 H 0.15 3.35 6.88 -2.91 -0.02 3.33 16 33 H 0.16 2.43 8.06 -2.91 -0.02 2.41 16 34 H 0.16 2.53 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -61.43 317.63 2.87 -58.57 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: 0.40 Total: 10.53 kcal Atomic # 6 Polarization: -34.78 SS G_CDS: 2.90 Total: -31.87 kcal Atomic # 7 Polarization: -78.50 SS G_CDS: -2.31 Total: -80.81 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Atomic # 17 Polarization: -2.25 SS G_CDS: -0.15 Total: -2.40 kcal Total: -61.43 2.87 -58.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020050059.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.807 kcal (2) G-P(sol) polarization free energy of solvation -61.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds