Wall clock time and date at job start Tue Mar 31 2020 03:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08991 * 109.47566 * 2 1 4 4 N 1.46903 * 109.46748 * 239.99482 * 2 1 3 5 5 C 1.46898 * 110.99673 * 85.00509 * 4 2 1 6 6 C 1.53006 * 109.47006 * 179.97438 * 5 4 2 7 7 C 1.50698 * 109.47184 * 179.97438 * 6 5 4 8 8 H 1.08005 * 119.99819 * 0.02562 * 7 6 5 9 9 C 1.37875 * 120.00046 * 179.97438 * 7 6 5 10 10 N 1.31518 * 119.99944 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99979 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.46926 * 60.00512 * 11 9 7 13 13 H 1.48506 * 109.46961 * 179.97438 * 11 9 7 14 14 H 1.48492 * 109.47227 * 300.00303 * 11 9 7 15 15 C 1.50706 * 109.46748 * 120.00132 * 2 1 3 16 16 C 1.38238 * 119.99815 * 100.00134 * 15 2 1 17 17 C 1.38191 * 120.03022 * 179.97438 * 16 15 2 18 18 C 1.38382 * 120.01129 * 359.97438 * 17 16 15 19 19 Cl 1.73601 * 120.00691 * 179.97438 * 18 17 16 20 20 C 1.38305 * 119.98639 * 0.02562 * 18 17 16 21 21 C 1.38337 * 119.98933 * 279.71482 * 15 2 1 22 22 Cl 1.73598 * 120.00876 * 0.02819 * 21 15 2 23 23 H 1.09004 * 109.46732 * 300.00617 * 1 2 3 24 24 H 1.08996 * 109.46768 * 60.00165 * 1 2 3 25 25 H 1.08995 * 109.47200 * 180.02562 * 1 2 3 26 26 H 1.00895 * 111.00497 * 321.04431 * 4 2 1 27 27 H 1.09001 * 109.47062 * 59.99745 * 5 4 2 28 28 H 1.08993 * 109.47084 * 299.99192 * 5 4 2 29 29 H 1.09001 * 109.46801 * 300.00064 * 6 5 4 30 30 H 1.09001 * 109.46998 * 59.99660 * 6 5 4 31 31 H 0.96997 * 119.99752 * 179.97438 * 10 9 7 32 32 H 1.08009 * 119.98509 * 359.94705 * 16 15 2 33 33 H 1.07998 * 119.99499 * 180.02562 * 17 16 15 34 34 H 1.08006 * 120.01171 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 7 2.0196 -0.6926 -1.1994 5 6 2.0825 0.2224 -2.3469 6 6 2.5962 -0.5331 -3.5742 7 6 2.6600 0.4054 -4.7515 8 1 2.3643 1.4377 -4.6358 9 6 3.0971 -0.0535 -5.9760 10 7 3.4577 -1.3104 -6.1167 11 14 3.1769 1.1101 -7.4351 12 1 4.0978 2.2326 -7.1232 13 1 3.6766 0.3770 -8.6261 14 1 1.8207 1.6458 -7.7159 15 6 2.0323 -0.7105 1.2305 16 6 2.4587 -2.0227 1.1453 17 6 2.9198 -2.6746 2.2731 18 6 2.9556 -2.0140 3.4885 19 17 3.5343 -2.8333 4.9054 20 6 2.5291 -0.7011 3.5744 21 6 2.0721 -0.0474 2.4440 22 17 1.5429 1.6026 2.5495 23 1 -0.3633 0.5140 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.4496 -1.4980 -1.4100 27 1 2.7589 1.0460 -2.1182 28 1 1.0871 0.6161 -2.5525 29 1 3.5916 -0.9266 -3.3682 30 1 1.9200 -1.3570 -3.8029 31 1 3.7648 -1.6332 -6.9783 32 1 2.4309 -2.5388 0.1969 33 1 3.2532 -3.6997 2.2058 34 1 2.5573 -0.1849 4.5227 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020050062.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:40 Heat of formation + Delta-G solvation = -4.178713 kcal Electronic energy + Delta-G solvation = -17585.154042 eV Core-core repulsion = 14568.883056 eV Total energy + Delta-G solvation = -3016.270986 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 287.054 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.86277 -37.18325 -36.67988 -36.17040 -33.44838 -31.69700 -31.05220 -29.40088 -27.86944 -24.44047 -23.56788 -22.78828 -20.66508 -20.57265 -17.52734 -16.47141 -16.01410 -15.74442 -14.98234 -14.48969 -14.37648 -14.11759 -13.97815 -13.94227 -13.07298 -12.64023 -12.57689 -12.37568 -12.15165 -11.99190 -11.63511 -11.25243 -11.17557 -11.14067 -11.03630 -10.93815 -10.74678 -10.55501 -10.07601 -9.43818 -9.19639 -9.06703 -8.69240 -8.37549 -7.94959 -6.02005 -4.04678 0.85859 0.99657 1.68282 2.14851 3.32235 3.33688 3.36798 3.39043 4.31277 4.48007 4.62920 4.74384 4.88969 5.12296 5.20420 5.24584 5.34186 5.42435 5.61291 5.64709 5.84116 5.88076 6.05789 6.11424 6.28110 6.30682 6.41038 6.49800 6.92522 7.37551 7.66861 7.74971 7.87695 8.03796 8.40199 9.02186 9.59303 11.09346 Molecular weight = 287.05amu Principal moments of inertia in cm(-1) A = 0.023889 B = 0.003324 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.828384 B = 8420.643868 C = 9217.114326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.115 3.885 3 H 0.094 0.906 4 N -0.684 5.684 5 C 0.067 3.933 6 C 0.026 3.974 7 C -0.523 4.523 8 H 0.054 0.946 9 C 0.059 3.941 10 N -0.893 5.893 11 Si 0.893 3.107 12 H -0.276 1.276 13 H -0.287 1.287 14 H -0.277 1.277 15 C -0.048 4.048 16 C -0.070 4.070 17 C -0.107 4.107 18 C -0.033 4.033 19 Cl -0.069 7.069 20 C -0.106 4.106 21 C -0.027 4.027 22 Cl -0.061 7.061 23 H 0.061 0.939 24 H 0.065 0.935 25 H 0.058 0.942 26 H 0.338 0.662 27 H 0.059 0.941 28 H 0.019 0.981 29 H 0.025 0.975 30 H 0.014 0.986 31 H 0.261 0.739 32 H 0.152 0.848 33 H 0.138 0.862 34 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.118 -0.950 20.960 21.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.004 3.996 3 H 0.112 0.888 4 N -0.314 5.314 5 C -0.061 4.061 6 C -0.011 4.011 7 C -0.562 4.562 8 H 0.072 0.928 9 C -0.143 4.143 10 N -0.532 5.532 11 Si 0.720 3.280 12 H -0.202 1.202 13 H -0.213 1.213 14 H -0.203 1.203 15 C -0.049 4.049 16 C -0.088 4.088 17 C -0.126 4.126 18 C -0.060 4.060 19 Cl -0.040 7.040 20 C -0.125 4.125 21 C -0.054 4.054 22 Cl -0.032 7.032 23 H 0.080 0.920 24 H 0.084 0.916 25 H 0.077 0.923 26 H 0.156 0.844 27 H 0.078 0.922 28 H 0.037 0.963 29 H 0.044 0.956 30 H 0.032 0.968 31 H 0.071 0.929 32 H 0.170 0.830 33 H 0.156 0.844 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -3.374 -0.912 21.107 21.395 hybrid contribution -0.802 0.778 -0.871 1.416 sum -4.176 -0.133 20.237 20.663 Atomic orbital electron populations 1.22453 0.95919 1.02392 1.02749 1.20486 0.92901 0.97822 0.88395 0.88838 1.60701 1.56117 1.10392 1.04225 1.22203 0.98469 0.95208 0.90240 1.19060 0.97009 0.95288 0.89772 1.21128 1.44134 0.96390 0.94535 0.92805 1.24991 0.95328 0.95105 0.98858 1.69957 1.44303 1.14371 1.24592 0.86652 0.78398 0.80948 0.81962 1.20207 1.21265 1.20288 1.19976 0.97234 0.94360 0.93351 1.21085 0.95720 0.93361 0.98654 1.21222 0.99750 1.00873 0.90709 1.20704 1.03313 0.93199 0.88779 1.98371 1.87350 1.78695 1.39585 1.20761 1.00219 0.93163 0.98406 1.20591 1.03528 0.86887 0.94397 1.98371 1.88723 1.17739 1.98321 0.92022 0.91589 0.92299 0.84378 0.92222 0.96251 0.95622 0.96785 0.92915 0.83035 0.84391 0.84238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.14 9.10 37.16 0.34 -1.81 16 2 C 0.11 1.58 2.25 -68.86 -0.16 1.42 16 3 H 0.09 1.37 7.00 -51.93 -0.36 1.01 16 4 N -0.68 -11.13 5.08 -107.95 -0.55 -11.68 16 5 C 0.07 1.33 5.42 -3.82 -0.02 1.31 16 6 C 0.03 0.66 5.23 -27.88 -0.15 0.51 16 7 C -0.52 -14.58 9.11 -34.44 -0.31 -14.90 16 8 H 0.05 1.45 7.74 -52.48 -0.41 1.05 16 9 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 10 N -0.89 -26.55 13.29 55.43 0.74 -25.82 16 11 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 14 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 15 C -0.05 -0.60 5.09 -104.58 -0.53 -1.14 16 16 C -0.07 -0.83 9.32 -39.60 -0.37 -1.20 16 17 C -0.11 -1.14 9.83 -39.55 -0.39 -1.53 16 18 C -0.03 -0.35 6.32 -39.50 -0.25 -0.60 16 19 Cl -0.07 -0.67 28.96 -51.86 -1.50 -2.17 16 20 C -0.11 -1.14 9.61 -39.51 -0.38 -1.52 16 21 C -0.03 -0.32 6.31 -39.50 -0.25 -0.57 16 22 Cl -0.06 -0.68 26.65 -51.86 -1.38 -2.06 16 23 H 0.06 0.69 7.29 -51.93 -0.38 0.31 16 24 H 0.07 0.84 7.45 -51.93 -0.39 0.46 16 25 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 26 H 0.34 5.18 8.01 -39.29 -0.31 4.87 16 27 H 0.06 1.22 8.06 -51.93 -0.42 0.80 16 28 H 0.02 0.38 7.44 -51.93 -0.39 -0.01 16 29 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 32 H 0.15 1.80 6.84 -52.48 -0.36 1.44 16 33 H 0.14 1.23 8.06 -52.49 -0.42 0.80 16 34 H 0.14 1.28 8.06 -52.48 -0.42 0.86 16 LS Contribution 316.55 15.07 4.77 4.77 Total: -1.00 -28.85 316.55 -9.77 -38.62 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -4.26 Total: 0.35 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: -2.56 Total: -18.46 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: 0.19 Total: -37.50 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 17 Polarization: -1.35 SS G_CDS: -2.88 Total: -4.23 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.85 -9.77 -38.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020050062.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.445 kcal (2) G-P(sol) polarization free energy of solvation -28.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds