Wall clock time and date at job start Tue Mar 31 2020 03:27:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31721 * 1
3 3 Si 1.86798 * 119.99879 * 2 1
4 4 H 1.48506 * 109.47297 * 90.00013 * 3 2 1
5 5 H 1.48503 * 109.47261 * 330.00194 * 3 2 1
6 6 H 1.48500 * 109.47454 * 210.00187 * 3 2 1
7 7 C 1.38544 * 120.00224 * 180.02562 * 2 1 3
8 8 H 1.08006 * 119.99762 * 179.97438 * 7 2 1
9 9 S 1.76199 * 119.99913 * 359.97438 * 7 2 1
10 10 C 1.76196 * 99.99844 * 180.02562 * 9 7 2
11 11 N 1.30223 * 126.09218 * 359.69252 * 10 9 7
12 12 N 1.26107 * 117.72406 * 179.75429 * 11 10 9
13 13 C 1.30245 * 117.70689 * 0.56047 * 12 11 10
14 14 N 1.38660 * 126.09199 * 179.70557 * 13 12 11
15 15 C 1.46497 * 120.00174 * 359.97438 * 14 13 12
16 16 C 1.53007 * 109.47280 * 180.02562 * 15 14 13
17 17 H 1.08996 * 109.81924 * 305.70087 * 16 15 14
18 18 C 1.54378 * 109.82872 * 184.81377 * 16 15 14
19 19 C 1.55452 * 102.18535 * 219.17949 * 18 16 15
20 20 C 1.54946 * 100.98406 * 34.04263 * 19 18 16
21 21 O 1.43235 * 109.83046 * 66.58752 * 16 15 14
22 22 S 1.76475 * 126.09050 * 180.02562 * 10 9 7
23 23 H 0.97006 * 119.99452 * 180.02562 * 1 2 3
24 24 H 0.97006 * 120.00039 * 179.97438 * 14 13 12
25 25 H 1.08995 * 109.46968 * 300.00292 * 15 14 13
26 26 H 1.08997 * 109.47064 * 60.00108 * 15 14 13
27 27 H 1.09004 * 110.85105 * 337.32202 * 18 16 15
28 28 H 1.08998 * 110.84958 * 100.93913 * 18 16 15
29 29 H 1.08997 * 111.05928 * 276.12165 * 19 18 16
30 30 H 1.09002 * 111.17743 * 152.00720 * 19 18 16
31 31 H 1.09004 * 110.30409 * 204.69027 * 20 19 18
32 32 H 1.09003 * 110.39588 * 82.56476 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3172 0.0000 0.0000
3 14 2.2512 1.6177 0.0000
4 1 2.4987 2.0465 1.4001
5 1 1.4486 2.6527 -0.7000
6 1 3.5487 1.4403 -0.7001
7 6 2.0100 -1.1998 -0.0005
8 1 3.0900 -1.1997 -0.0010
9 16 1.1290 -2.7258 -0.0005
10 6 2.4788 -3.8582 -0.0005
11 7 3.7428 -3.5452 -0.0062
12 7 4.5807 -4.4877 -0.0004
13 6 4.1212 -5.7064 -0.0005
14 7 4.8815 -6.8660 -0.0005
15 6 6.3441 -6.7829 -0.0009
16 6 6.9352 -8.1942 -0.0014
17 1 6.5262 -8.7664 0.8313
18 6 8.4723 -8.1183 0.1200
19 6 8.9337 -9.2466 -0.8446
20 6 7.8414 -9.1633 -1.9404
21 8 6.6286 -8.8489 -1.2380
22 16 2.3586 -5.6189 -0.0012
23 1 -0.4849 -0.8401 0.0004
24 1 4.4449 -7.7322 -0.0002
25 1 6.6775 -6.2495 -0.8911
26 1 6.6780 -6.2492 0.8888
27 1 8.8404 -7.1481 -0.2139
28 1 8.7914 -8.3248 1.1415
29 1 8.9190 -10.2168 -0.3481
30 1 9.9203 -9.0337 -1.2564
31 1 7.7449 -10.1211 -2.4519
32 1 8.0797 -8.3757 -2.6552
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000048355706.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:27:26
Heat of formation + Delta-G solvation = 4.739208 kcal
Electronic energy + Delta-G solvation = -17307.419105 eV
Core-core repulsion = 14327.914993 eV
Total energy + Delta-G solvation = -2979.504112 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 287.050 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-40.06550 -39.71373 -35.92388 -32.85739 -32.56678 -31.06168 -29.16388 -26.17100
-25.06690 -24.48850 -22.18476 -21.65687 -19.89591 -19.12479 -18.20236 -17.36377
-16.91705 -16.33069 -15.80653 -15.11883 -14.60070 -14.40418 -14.00941 -13.94895
-13.27342 -13.07311 -12.88930 -12.56398 -12.29605 -12.16837 -11.64720 -11.64360
-11.26181 -11.06116 -10.68844 -10.47017 -10.20623 -9.88216 -9.63794 -9.52545
-9.47847 -9.01665 -8.63220 -8.04962 -6.88549 -6.77788 -4.28150 1.24325
1.33463 1.90522 2.72691 3.28321 3.31726 3.35732 3.49382 3.55572
3.63268 4.03154 4.05681 4.32997 4.45616 4.73955 4.81158 4.89674
4.98561 5.01329 5.26963 5.30780 5.32940 5.38943 5.49054 5.55340
5.65595 5.83291 6.00999 6.63559 7.05467 7.43843 8.00125 8.29499
8.94150 9.56526 10.52902
Molecular weight = 287.05amu
Principal moments of inertia in cm(-1)
A = 0.033185 B = 0.003275 C = 0.003051
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 843.562995 B = 8548.061533 C = 9175.683591
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.878 5.878
2 C 0.041 3.959
3 Si 1.092 2.908
4 H -0.280 1.280
5 H -0.278 1.278
6 H -0.280 1.280
7 C -0.602 4.602
8 H 0.100 0.900
9 S 0.116 5.884
10 C 0.008 3.992
11 N -0.257 5.257
12 N -0.324 5.324
13 C 0.261 3.739
14 N -0.690 5.690
15 C 0.131 3.869
16 C 0.069 3.931
17 H 0.088 0.912
18 C -0.147 4.147
19 C -0.156 4.156
20 C 0.049 3.951
21 O -0.375 6.375
22 S 0.006 5.994
23 H 0.272 0.728
24 H 0.413 0.587
25 H 0.069 0.931
26 H 0.075 0.925
27 H 0.084 0.916
28 H 0.087 0.913
29 H 0.078 0.922
30 H 0.084 0.916
31 H 0.085 0.915
32 H 0.062 0.938
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 13.863 -18.515 -0.293 23.132
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.512 5.512
2 C -0.170 4.170
3 Si 0.917 3.083
4 H -0.206 1.206
5 H -0.204 1.204
6 H -0.206 1.206
7 C -0.752 4.752
8 H 0.119 0.881
9 S 0.350 5.650
10 C -0.381 4.381
11 N -0.099 5.099
12 N -0.169 5.169
13 C -0.117 4.117
14 N -0.333 5.333
15 C 0.004 3.996
16 C 0.010 3.990
17 H 0.106 0.894
18 C -0.185 4.185
19 C -0.193 4.193
20 C -0.028 4.028
21 O -0.294 6.294
22 S 0.240 5.760
23 H 0.084 0.916
24 H 0.249 0.751
25 H 0.087 0.913
26 H 0.093 0.907
27 H 0.103 0.897
28 H 0.105 0.895
29 H 0.097 0.903
30 H 0.103 0.897
31 H 0.103 0.897
32 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges 12.600 -16.767 -0.376 20.977
hybrid contribution 1.630 -1.832 0.062 2.453
sum 14.230 -18.598 -0.314 23.420
Atomic orbital electron populations
1.70936 1.06713 1.30376 1.43190 1.26294 0.96077 1.02708 0.91910
0.83207 0.74714 0.72933 0.77484 1.20641 1.20363 1.20585 1.24226
0.98843 0.90128 1.62020 0.88149 1.82925 1.00995 0.97760 1.83273
1.31377 1.01785 0.95932 1.08998 1.71337 0.96817 1.22275 1.19447
1.71062 1.28591 0.93939 1.23320 1.26431 0.90287 0.91473 1.03525
1.43291 1.04368 1.03067 1.82616 1.21736 0.79260 0.95810 1.02792
1.23024 0.95212 0.92831 0.87889 0.89446 1.23124 0.93789 1.00275
1.01349 1.23292 0.99823 0.99407 0.96816 1.23402 0.83822 1.00864
0.94665 1.88476 1.29681 1.78329 1.32955 1.85265 1.04801 1.07348
1.78621 0.91560 0.75065 0.91310 0.90710 0.89721 0.89467 0.90291
0.89693 0.89674 0.92017
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.88 -25.49 13.67 55.48 0.76 -24.74 16
2 C 0.04 1.13 5.49 -17.49 -0.10 1.04 16
3 Si 1.09 24.72 29.91 -169.99 -5.09 19.64 16
4 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16
5 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16
6 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16
7 C -0.60 -17.15 9.36 30.85 0.29 -16.86 16
8 H 0.10 2.96 6.91 -52.48 -0.36 2.60 16
9 S 0.12 2.96 20.91 -107.50 -2.25 0.71 16
10 C 0.01 0.19 7.82 52.08 0.41 0.59 16
11 N -0.26 -6.49 10.36 31.30 0.32 -6.17 16
12 N -0.32 -7.23 11.23 30.99 0.35 -6.88 16
13 C 0.26 4.85 8.50 -87.18 -0.74 4.11 16
14 N -0.69 -9.65 5.69 -60.65 -0.34 -9.99 16
15 C 0.13 1.54 5.54 -4.04 -0.02 1.52 16
16 C 0.07 0.60 3.56 -26.01 -0.09 0.51 16
17 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16
18 C -0.15 -0.95 6.56 -24.71 -0.16 -1.12 16
19 C -0.16 -0.87 7.16 -24.40 -0.17 -1.05 16
20 C 0.05 0.37 7.78 38.18 0.30 0.66 16
21 O -0.38 -3.89 10.99 -35.23 -0.39 -4.28 16
22 S 0.01 0.11 23.53 -107.50 -2.53 -2.42 16
23 H 0.27 7.81 7.12 -40.82 -0.29 7.52 16
24 H 0.41 4.87 8.60 -40.82 -0.35 4.52 16
25 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16
26 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16
27 H 0.08 0.56 7.85 -51.93 -0.41 0.15 16
28 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16
29 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16
30 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16
31 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16
32 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16
LS Contribution 304.99 15.07 4.60 4.60
Total: -1.00 -32.73 304.99 -8.45 -41.18
By element:
Atomic # 1 Polarization: 2.53 SS G_CDS: -3.59 Total: -1.06 kcal
Atomic # 6 Polarization: -10.29 SS G_CDS: -0.30 Total: -10.59 kcal
Atomic # 7 Polarization: -48.86 SS G_CDS: 1.09 Total: -47.78 kcal
Atomic # 8 Polarization: -3.89 SS G_CDS: -0.39 Total: -4.28 kcal
Atomic # 14 Polarization: 24.72 SS G_CDS: -5.09 Total: 19.64 kcal
Atomic # 16 Polarization: 3.06 SS G_CDS: -4.78 Total: -1.71 kcal
Total LS contribution 4.60 Total: 4.60 kcal
Total: -32.73 -8.45 -41.18 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000048355706.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 45.921 kcal
(2) G-P(sol) polarization free energy of solvation -32.729 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.192 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.453 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.182 kcal
(6) G-S(sol) free energy of system = (1) + (5) 4.739 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.39 seconds