Wall clock time and date at job start Tue Mar 31 2020 03:27:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31721 * 1
3 3 Si 1.86798 * 119.99879 * 2 1
4 4 H 1.48506 * 109.47297 * 90.00013 * 3 2 1
5 5 H 1.48503 * 109.47261 * 330.00194 * 3 2 1
6 6 H 1.48500 * 109.47454 * 210.00187 * 3 2 1
7 7 C 1.38544 * 120.00224 * 180.02562 * 2 1 3
8 8 H 1.08006 * 119.99762 * 179.97438 * 7 2 1
9 9 S 1.76199 * 119.99913 * 359.97438 * 7 2 1
10 10 C 1.76196 * 99.99844 * 180.02562 * 9 7 2
11 11 N 1.30223 * 126.09218 * 359.69252 * 10 9 7
12 12 N 1.26107 * 117.72406 * 179.75429 * 11 10 9
13 13 C 1.30245 * 117.70689 * 0.56047 * 12 11 10
14 14 N 1.38660 * 126.09199 * 179.70557 * 13 12 11
15 15 C 1.46497 * 120.00174 * 359.97438 * 14 13 12
16 16 C 1.53007 * 109.47280 * 180.02562 * 15 14 13
17 17 H 1.08996 * 109.81924 * 305.70087 * 16 15 14
18 18 C 1.54378 * 109.82872 * 184.81377 * 16 15 14
19 19 C 1.55452 * 102.18535 * 219.17949 * 18 16 15
20 20 C 1.54946 * 100.98406 * 34.04263 * 19 18 16
21 21 O 1.43235 * 109.83046 * 66.58752 * 16 15 14
22 22 S 1.76475 * 126.09050 * 180.02562 * 10 9 7
23 23 H 0.97006 * 119.99452 * 180.02562 * 1 2 3
24 24 H 0.97006 * 120.00039 * 179.97438 * 14 13 12
25 25 H 1.08995 * 109.46968 * 300.00292 * 15 14 13
26 26 H 1.08997 * 109.47064 * 60.00108 * 15 14 13
27 27 H 1.09004 * 110.85105 * 337.32202 * 18 16 15
28 28 H 1.08998 * 110.84958 * 100.93913 * 18 16 15
29 29 H 1.08997 * 111.05928 * 276.12165 * 19 18 16
30 30 H 1.09002 * 111.17743 * 152.00720 * 19 18 16
31 31 H 1.09004 * 110.30409 * 204.69027 * 20 19 18
32 32 H 1.09003 * 110.39588 * 82.56476 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3172 0.0000 0.0000
3 14 2.2512 1.6177 0.0000
4 1 2.4987 2.0465 1.4001
5 1 1.4486 2.6527 -0.7000
6 1 3.5487 1.4403 -0.7001
7 6 2.0100 -1.1998 -0.0005
8 1 3.0900 -1.1997 -0.0010
9 16 1.1290 -2.7258 -0.0005
10 6 2.4788 -3.8582 -0.0005
11 7 3.7428 -3.5452 -0.0062
12 7 4.5807 -4.4877 -0.0004
13 6 4.1212 -5.7064 -0.0005
14 7 4.8815 -6.8660 -0.0005
15 6 6.3441 -6.7829 -0.0009
16 6 6.9352 -8.1942 -0.0014
17 1 6.5262 -8.7664 0.8313
18 6 8.4723 -8.1183 0.1200
19 6 8.9337 -9.2466 -0.8446
20 6 7.8414 -9.1633 -1.9404
21 8 6.6286 -8.8489 -1.2380
22 16 2.3586 -5.6189 -0.0012
23 1 -0.4849 -0.8401 0.0004
24 1 4.4449 -7.7322 -0.0002
25 1 6.6775 -6.2495 -0.8911
26 1 6.6780 -6.2492 0.8888
27 1 8.8404 -7.1481 -0.2139
28 1 8.7914 -8.3248 1.1415
29 1 8.9190 -10.2168 -0.3481
30 1 9.9203 -9.0337 -1.2564
31 1 7.7449 -10.1211 -2.4519
32 1 8.0797 -8.3757 -2.6552
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000048355706.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:27:25
Heat of formation + Delta-G solvation = -18.283489 kcal
Electronic energy + Delta-G solvation = -17308.417444 eV
Core-core repulsion = 14327.914993 eV
Total energy + Delta-G solvation = -2980.502451 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 287.050 amu
Computer time = 0.39 seconds
Orbital eigenvalues (eV)
-41.66045 -40.55900 -37.20475 -34.95366 -33.19151 -32.19447 -30.55165 -27.40459
-27.10355 -25.88412 -22.82941 -22.42729 -21.44242 -20.93703 -19.94536 -18.52313
-18.00370 -17.52931 -16.72870 -16.68758 -16.08142 -15.78527 -15.27724 -14.94771
-14.83996 -14.34274 -14.25856 -14.02052 -13.74184 -12.89283 -12.71238 -12.49102
-12.33833 -12.23921 -12.05194 -11.93778 -11.73780 -11.37050 -11.30937 -11.27456
-10.79346 -10.60156 -10.58931 -9.62847 -9.05862 -8.63147 -6.42300 -0.39076
-0.33444 0.19877 0.93885 1.48460 1.57840 1.74017 1.81174 2.09722
2.15316 2.84029 2.88803 2.91224 3.47900 3.61486 3.92555 4.00535
4.13427 4.15577 4.19035 4.39275 4.53527 4.61096 4.80852 4.91204
4.94259 5.02971 5.24386 5.61130 5.78229 5.99467 6.09667 6.26419
6.84583 7.83288 8.37764
Molecular weight = 287.05amu
Principal moments of inertia in cm(-1)
A = 0.033185 B = 0.003275 C = 0.003051
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 843.562995 B = 8548.061533 C = 9175.683591
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.901 5.901
2 C 0.000 4.000
3 Si 1.134 2.866
4 H -0.264 1.264
5 H -0.268 1.268
6 H -0.275 1.275
7 C -0.622 4.622
8 H 0.081 0.919
9 S 0.083 5.917
10 C -0.028 4.028
11 N -0.278 5.278
12 N -0.361 5.361
13 C 0.278 3.722
14 N -0.666 5.666
15 C 0.125 3.875
16 C 0.074 3.926
17 H 0.104 0.896
18 C -0.146 4.146
19 C -0.147 4.147
20 C 0.039 3.961
21 O -0.399 6.399
22 S 0.087 5.913
23 H 0.264 0.736
24 H 0.427 0.573
25 H 0.054 0.946
26 H 0.079 0.921
27 H 0.080 0.920
28 H 0.106 0.894
29 H 0.090 0.910
30 H 0.099 0.901
31 H 0.097 0.903
32 H 0.056 0.944
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 15.754 -20.844 0.044 26.127
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.536 5.536
2 C -0.205 4.205
3 Si 0.952 3.048
4 H -0.189 1.189
5 H -0.193 1.193
6 H -0.200 1.200
7 C -0.771 4.771
8 H 0.099 0.901
9 S 0.316 5.684
10 C -0.419 4.419
11 N -0.119 5.119
12 N -0.208 5.208
13 C -0.100 4.100
14 N -0.308 5.308
15 C -0.001 4.001
16 C 0.015 3.985
17 H 0.121 0.879
18 C -0.184 4.184
19 C -0.184 4.184
20 C -0.037 4.037
21 O -0.319 6.319
22 S 0.321 5.679
23 H 0.075 0.925
24 H 0.267 0.733
25 H 0.073 0.927
26 H 0.097 0.903
27 H 0.099 0.901
28 H 0.124 0.876
29 H 0.108 0.892
30 H 0.118 0.882
31 H 0.115 0.885
32 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges 14.542 -19.204 -0.038 24.089
hybrid contribution 1.252 -1.521 -0.074 1.972
sum 15.795 -20.725 -0.112 26.058
Atomic orbital electron populations
1.71012 1.07371 1.29961 1.45214 1.27666 0.96212 1.05790 0.90848
0.82726 0.73863 0.69736 0.78497 1.18945 1.19267 1.20025 1.24299
0.98159 0.92002 1.62671 0.90075 1.82676 1.01964 0.97429 1.86375
1.31211 1.01120 0.98775 1.10839 1.71327 0.97793 1.24525 1.18221
1.71053 1.28173 0.94766 1.26814 1.26845 0.91363 0.91988 0.99766
1.43669 1.05422 1.02218 1.79533 1.21996 0.77516 0.98325 1.02268
1.23063 0.96700 0.90667 0.88028 0.87852 1.23163 0.91852 1.00594
1.02768 1.23283 0.99762 0.99578 0.95803 1.23594 0.83703 1.01247
0.95162 1.88446 1.31476 1.78349 1.33641 1.84911 1.03517 1.02281
1.77175 0.92466 0.73321 0.92737 0.90330 0.90089 0.87595 0.89178
0.88236 0.88527 0.92597
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -53.57 13.67 21.61 0.30 -53.27 16
2 C 0.00 -0.01 5.49 84.78 0.47 0.45 16
3 Si 1.13 50.31 29.91 68.60 2.05 52.36 16
4 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16
5 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16
6 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16
7 C -0.62 -36.64 9.36 67.89 0.64 -36.01 16
8 H 0.08 4.98 6.91 -2.91 -0.02 4.96 16
9 S 0.08 4.39 20.91 -56.49 -1.18 3.20 16
10 C -0.03 -1.37 7.82 130.48 1.02 -0.35 16
11 N -0.28 -14.20 10.36 -54.89 -0.57 -14.77 16
12 N -0.36 -15.91 11.23 -55.88 -0.63 -16.54 16
13 C 0.28 9.83 8.50 179.14 1.52 11.36 16
14 N -0.67 -16.83 5.69 -345.79 -1.97 -18.79 16
15 C 0.12 2.67 5.54 86.38 0.48 3.15 16
16 C 0.07 1.08 3.56 31.06 0.11 1.19 16
17 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16
18 C -0.15 -1.44 6.56 31.91 0.21 -1.23 16
19 C -0.15 -1.17 7.16 32.10 0.23 -0.94 16
20 C 0.04 0.49 7.78 72.65 0.57 1.06 16
21 O -0.40 -7.27 10.99 -148.98 -1.64 -8.91 16
22 S 0.09 3.10 23.53 -56.49 -1.33 1.77 16
23 H 0.26 15.70 7.12 -92.70 -0.66 15.04 16
24 H 0.43 8.58 8.60 -92.70 -0.80 7.78 16
25 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16
26 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16
27 H 0.08 0.88 7.85 -2.38 -0.02 0.86 16
28 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16
29 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16
30 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16
31 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16
32 H 0.06 0.75 8.14 -2.39 -0.02 0.74 16
Total: -1.00 -72.71 304.99 0.74 -71.97
By element:
Atomic # 1 Polarization: 3.83 SS G_CDS: 0.47 Total: 4.30 kcal
Atomic # 6 Polarization: -26.56 SS G_CDS: 5.24 Total: -21.32 kcal
Atomic # 7 Polarization: -100.51 SS G_CDS: -2.87 Total: -103.38 kcal
Atomic # 8 Polarization: -7.27 SS G_CDS: -1.64 Total: -8.91 kcal
Atomic # 14 Polarization: 50.31 SS G_CDS: 2.05 Total: 52.36 kcal
Atomic # 16 Polarization: 7.49 SS G_CDS: -2.51 Total: 4.98 kcal
Total: -72.71 0.74 -71.97 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000048355706.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 53.683 kcal
(2) G-P(sol) polarization free energy of solvation -72.709 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.026 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.743 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.966 kcal
(6) G-S(sol) free energy of system = (1) + (5) -18.283 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.39 seconds