Wall clock time and date at job start Tue Mar 31 2020 03:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34219 * 117.00058 * 2 1 4 4 O 1.20828 * 120.00328 * 0.02562 * 3 2 1 5 5 C 1.50706 * 120.00069 * 180.02562 * 3 2 1 6 6 N 1.46498 * 109.47252 * 180.02562 * 5 3 2 7 7 C 1.36943 * 119.99337 * 262.85066 * 6 5 3 8 8 H 1.07996 * 119.99631 * 142.30052 * 7 6 5 9 9 C 1.38807 * 120.00334 * 322.28980 * 7 6 5 10 10 N 1.31617 * 120.00265 * 156.55991 * 9 7 6 11 11 Si 1.86803 * 119.99999 * 336.56814 * 9 7 6 12 12 H 1.48491 * 109.47452 * 95.20893 * 11 9 7 13 13 H 1.48505 * 109.47096 * 215.20924 * 11 9 7 14 14 H 1.48503 * 109.46767 * 335.20319 * 11 9 7 15 15 C 1.46494 * 120.00575 * 82.85128 * 6 5 3 16 16 C 1.53000 * 109.47063 * 89.99747 * 15 6 5 17 17 C 1.53003 * 109.47100 * 180.02562 * 16 15 6 18 18 N 1.46901 * 109.47473 * 179.97438 * 17 16 15 19 19 C 1.47012 * 110.99893 * 293.64110 * 18 17 16 20 20 C 1.53096 * 109.25603 * 177.60459 * 19 18 17 21 21 O 1.43023 * 109.25926 * 56.84493 * 20 19 18 22 22 C 1.43016 * 113.73346 * 301.32762 * 21 20 19 23 23 C 1.47008 * 111.00300 * 169.99709 * 18 17 16 24 24 H 1.08998 * 109.46976 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46413 * 299.99777 * 1 2 3 26 26 H 1.08994 * 109.47011 * 59.99632 * 1 2 3 27 27 H 1.09000 * 109.47131 * 59.99727 * 5 3 2 28 28 H 1.09005 * 109.46531 * 299.99990 * 5 3 2 29 29 H 0.96996 * 120.00499 * 180.02562 * 10 9 7 30 30 H 1.09008 * 109.46681 * 329.99925 * 15 6 5 31 31 H 1.09000 * 109.47453 * 210.00081 * 15 6 5 32 32 H 1.08998 * 109.47086 * 60.00593 * 16 15 6 33 33 H 1.09001 * 109.46927 * 300.00022 * 16 15 6 34 34 H 1.09008 * 109.46936 * 60.00000 * 17 16 15 35 35 H 1.09000 * 109.47162 * 300.00178 * 17 16 15 36 36 H 1.09004 * 109.50470 * 297.53373 * 19 18 17 37 37 H 1.08993 * 109.51486 * 57.66406 * 19 18 17 38 38 H 1.08998 * 109.50939 * 296.90803 * 20 19 18 39 39 H 1.09001 * 109.54572 * 176.79781 * 20 19 18 40 40 H 1.08994 * 109.51056 * 298.73646 * 22 21 20 41 41 H 1.09004 * 109.53291 * 178.62374 * 22 21 20 42 42 H 1.08994 * 109.50748 * 302.33559 * 23 18 17 43 43 H 1.09003 * 109.50466 * 62.41809 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9818 2.6796 0.0002 7 6 4.3170 3.2950 -1.1764 8 1 4.0426 4.3261 -1.3437 9 6 5.0095 2.5937 -2.1538 10 7 4.9392 2.9747 -3.4117 11 14 6.0411 1.1089 -1.6840 12 1 5.2416 -0.1284 -1.8705 13 1 7.2489 1.0525 -2.5462 14 1 6.4531 1.2225 -0.2618 15 6 4.0387 3.4261 1.2594 16 6 5.4311 3.2800 1.8764 17 6 5.4903 4.0591 3.1919 18 7 6.8270 3.9183 3.7847 19 6 7.0769 2.5294 4.1968 20 6 8.4989 2.4158 4.7527 21 8 8.6579 3.3385 5.8339 22 6 8.4225 4.7007 5.4674 23 6 6.9998 4.8375 4.9189 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3632 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 3.9558 0.7808 -0.8908 28 1 3.9564 0.7804 0.8892 29 1 5.4228 2.4845 -4.0947 30 1 3.2923 3.0321 1.9493 31 1 3.8353 4.4795 1.0668 32 1 6.1774 3.6739 1.1866 33 1 5.6344 2.2265 2.0690 34 1 4.7440 3.6647 3.8816 35 1 5.2868 5.1125 2.9997 36 1 6.3610 2.2441 4.9677 37 1 6.9686 1.8692 3.3364 38 1 9.2168 2.6493 3.9664 39 1 8.6699 1.4011 5.1121 40 1 9.1381 5.0006 4.7020 41 1 8.5377 5.3389 6.3436 42 1 6.8352 5.8620 4.5855 43 1 6.2821 4.5895 5.7010 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080872324.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:22 Heat of formation + Delta-G solvation = -96.861858 kcal Electronic energy + Delta-G solvation = -23610.883282 eV Core-core repulsion = 20078.559775 eV Total energy + Delta-G solvation = -3532.323507 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.68137 -39.56816 -36.85207 -35.94877 -35.14273 -32.31342 -31.34722 -31.00876 -28.58378 -27.31434 -26.21473 -24.65969 -24.08987 -22.01305 -20.94510 -20.35173 -19.84757 -17.26891 -16.93429 -16.62322 -16.22106 -16.01132 -15.56694 -15.33839 -15.12916 -14.93349 -14.71623 -14.44743 -13.77629 -13.64992 -13.15121 -12.99062 -12.62642 -12.58826 -12.25693 -11.88197 -11.72989 -11.52463 -11.42155 -11.37067 -11.25967 -10.75556 -10.68295 -10.58552 -10.34844 -10.23055 -9.92781 -9.77233 -9.73327 -9.62316 -8.64935 -8.36027 -7.06769 -6.12135 -3.54929 3.01909 3.20348 3.33778 3.39997 3.43799 3.68355 3.84811 4.39132 4.75458 4.83012 4.92784 4.97966 5.05328 5.16360 5.21186 5.38013 5.41688 5.45866 5.47519 5.51794 5.56680 5.66260 5.69278 5.74703 5.83046 5.87184 5.87761 5.92959 6.01094 6.09353 6.28690 6.34809 6.75122 6.91713 6.95557 7.03336 7.05733 7.11942 7.86255 8.28306 8.53480 8.83205 9.54748 9.90823 11.02585 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.015599 B = 0.004558 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.592949 B = 6141.703319 C = 6955.211621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.377 6.377 3 C 0.426 3.574 4 O -0.497 6.497 5 C 0.141 3.859 6 N -0.570 5.570 7 C -0.271 4.271 8 H 0.083 0.917 9 C 0.039 3.961 10 N -0.887 5.887 11 Si 0.863 3.137 12 H -0.282 1.282 13 H -0.295 1.295 14 H -0.259 1.259 15 C 0.156 3.844 16 C -0.135 4.135 17 C 0.059 3.941 18 N -0.536 5.536 19 C 0.015 3.985 20 C 0.063 3.937 21 O -0.390 6.390 22 C 0.064 3.936 23 C 0.017 3.983 24 H 0.089 0.911 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.099 0.901 28 H 0.079 0.921 29 H 0.266 0.734 30 H 0.038 0.962 31 H 0.058 0.942 32 H 0.078 0.922 33 H 0.052 0.948 34 H 0.029 0.971 35 H 0.075 0.925 36 H 0.039 0.961 37 H 0.092 0.908 38 H 0.060 0.940 39 H 0.096 0.904 40 H 0.059 0.941 41 H 0.095 0.905 42 H 0.085 0.915 43 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.144 -2.675 15.471 15.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.294 6.294 3 C 0.265 3.735 4 O -0.382 6.382 5 C 0.011 3.989 6 N -0.290 5.290 7 C -0.399 4.399 8 H 0.100 0.900 9 C -0.163 4.163 10 N -0.527 5.527 11 Si 0.691 3.309 12 H -0.210 1.210 13 H -0.222 1.222 14 H -0.184 1.184 15 C 0.030 3.970 16 C -0.175 4.175 17 C -0.069 4.069 18 N -0.261 5.261 19 C -0.113 4.113 20 C -0.014 4.014 21 O -0.308 6.308 22 C -0.013 4.013 23 C -0.111 4.111 24 H 0.108 0.892 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.116 0.884 28 H 0.097 0.903 29 H 0.076 0.924 30 H 0.056 0.944 31 H 0.077 0.923 32 H 0.097 0.903 33 H 0.070 0.930 34 H 0.048 0.952 35 H 0.094 0.906 36 H 0.058 0.942 37 H 0.110 0.890 38 H 0.078 0.922 39 H 0.114 0.886 40 H 0.078 0.922 41 H 0.113 0.887 42 H 0.104 0.896 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 2.374 -2.261 15.106 15.458 hybrid contribution -0.489 -0.939 0.285 1.096 sum 1.885 -3.200 15.391 15.833 Atomic orbital electron populations 1.23066 0.78707 1.02395 1.01864 1.86627 1.21981 1.35884 1.84925 1.26650 0.94304 0.80791 0.71731 1.90562 1.66837 1.36437 1.44406 1.21326 0.85004 0.89622 1.02931 1.43855 1.72939 1.07725 1.04442 1.18793 1.31055 0.98832 0.91264 0.89974 1.25514 0.97612 0.98020 0.95145 1.69893 1.41592 1.41568 0.99603 0.87116 0.81289 0.82878 0.79572 1.21016 1.22197 1.18363 1.20857 0.92971 0.96839 0.86349 1.22222 1.01205 0.99143 0.94908 1.22164 0.87216 1.01357 0.96133 1.62221 1.30184 1.04938 1.28800 1.22825 0.97173 0.91073 1.00224 1.22685 0.95590 0.93385 0.89710 1.87951 1.90792 1.16595 1.35498 1.22652 0.95162 0.83381 1.00128 1.22769 0.97529 0.98156 0.92655 0.89205 0.92783 0.92470 0.88352 0.90303 0.92399 0.94350 0.92334 0.90331 0.92959 0.95239 0.90616 0.94238 0.89005 0.92155 0.88629 0.92229 0.88733 0.89637 0.94289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.56 101.05 1.07 1.56 16 2 O -0.38 -6.99 10.57 -39.23 -0.41 -7.40 16 3 C 0.43 9.12 8.01 36.01 0.29 9.41 16 4 O -0.50 -11.94 16.10 -18.75 -0.30 -12.24 16 5 C 0.14 3.01 4.86 -5.19 -0.03 2.99 16 6 N -0.57 -13.21 1.59 -174.61 -0.28 -13.49 16 7 C -0.27 -7.40 9.90 -15.06 -0.15 -7.55 16 8 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 9 C 0.04 1.08 5.23 -17.43 -0.09 0.99 16 10 N -0.89 -26.43 13.97 55.49 0.78 -25.66 16 11 Si 0.86 20.60 25.15 -169.99 -4.28 16.32 16 12 H -0.28 -6.52 6.67 56.52 0.38 -6.14 16 13 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 14 H -0.26 -5.85 7.11 56.52 0.40 -5.45 16 15 C 0.16 3.02 5.59 -4.04 -0.02 2.99 16 16 C -0.13 -2.29 5.48 -26.73 -0.15 -2.44 16 17 C 0.06 0.83 4.96 -3.82 -0.02 0.81 16 18 N -0.54 -7.18 4.73 -234.32 -1.11 -8.28 16 19 C 0.02 0.19 5.44 -3.71 -0.02 0.17 16 20 C 0.06 0.72 7.01 37.21 0.26 0.98 16 21 O -0.39 -4.81 10.83 -35.23 -0.38 -5.20 16 22 C 0.06 0.66 7.01 37.21 0.26 0.93 16 23 C 0.02 0.19 5.64 -3.72 -0.02 0.17 16 24 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 25 H 0.05 0.74 8.13 -51.93 -0.42 0.32 16 26 H 0.06 0.86 8.13 -51.93 -0.42 0.43 16 27 H 0.10 2.25 3.76 -51.93 -0.20 2.06 16 28 H 0.08 1.42 8.12 -51.93 -0.42 1.00 16 29 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 30 H 0.04 0.69 8.07 -51.92 -0.42 0.28 16 31 H 0.06 1.16 8.04 -51.93 -0.42 0.74 16 32 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 33 H 0.05 0.88 6.51 -51.93 -0.34 0.54 16 34 H 0.03 0.40 8.12 -51.92 -0.42 -0.03 16 35 H 0.08 1.02 8.04 -51.93 -0.42 0.61 16 36 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.09 1.19 6.38 -51.93 -0.33 0.86 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.09 0.86 8.09 -51.93 -0.42 0.44 16 43 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 346.38 15.07 5.22 5.22 Total: -1.00 -32.09 346.38 -6.57 -38.66 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -7.19 Total: 1.06 kcal Atomic # 6 Polarization: 9.63 SS G_CDS: 1.38 Total: 11.01 kcal Atomic # 7 Polarization: -46.82 SS G_CDS: -0.61 Total: -47.43 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: -1.10 Total: -24.84 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.28 Total: 16.32 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.09 -6.57 -38.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080872324.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.201 kcal (2) G-P(sol) polarization free energy of solvation -32.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds