Wall clock time and date at job start Tue Mar 31 2020 03:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.32570 * 119.99946 * 2 1 4 4 C 1.47811 * 120.00460 * 175.59228 * 3 2 1 5 5 C 1.39536 * 120.13715 * 321.56971 * 4 3 2 6 6 C 1.37974 * 119.85665 * 179.71627 * 5 4 3 7 7 C 1.38348 * 120.13853 * 0.54022 * 6 5 4 8 8 C 1.38346 * 120.28467 * 359.76082 * 7 6 5 9 9 C 1.37976 * 120.14406 * 359.95307 * 8 7 6 10 10 C 1.50698 * 120.00494 * 179.97438 * 2 1 3 11 11 N 1.46896 * 109.47532 * 276.41981 * 10 2 1 12 12 C 1.46891 * 111.00253 * 175.19785 * 11 10 2 13 13 C 1.53240 * 109.34277 * 172.74632 * 12 11 10 14 14 N 1.47085 * 108.52078 * 53.82439 * 13 12 11 15 15 C 1.36940 * 120.87802 * 128.79983 * 14 13 12 16 16 H 1.07999 * 119.99858 * 211.95059 * 15 14 13 17 17 C 1.38808 * 119.99985 * 31.94845 * 15 14 13 18 18 N 1.31615 * 120.00573 * 13.07139 * 17 15 14 19 19 Si 1.86807 * 119.99793 * 193.07401 * 17 15 14 20 20 H 1.48503 * 109.47169 * 60.00065 * 19 17 15 21 21 H 1.48493 * 109.47210 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46823 * 300.00177 * 19 17 15 23 23 C 1.47080 * 118.23941 * 308.81882 * 14 13 12 24 24 C 1.46903 * 111.00058 * 50.88710 * 11 10 2 25 25 H 1.09006 * 109.47009 * 275.65268 * 1 2 3 26 26 H 1.08994 * 109.47343 * 35.65671 * 1 2 3 27 27 H 1.08995 * 109.47046 * 155.65911 * 1 2 3 28 28 H 1.08006 * 119.99817 * 355.58631 * 3 2 1 29 29 H 1.08005 * 120.07316 * 359.97438 * 5 4 3 30 30 H 1.08001 * 119.93181 * 180.27424 * 6 5 4 31 31 H 1.07998 * 119.85555 * 179.73818 * 7 6 5 32 32 H 1.08004 * 119.92567 * 179.97438 * 8 7 6 33 33 H 1.07994 * 120.07223 * 180.02562 * 9 8 7 34 34 H 1.09000 * 109.47109 * 156.41376 * 10 2 1 35 35 H 1.09007 * 109.46426 * 36.41778 * 10 2 1 36 36 H 1.08997 * 109.50005 * 52.78159 * 12 11 10 37 37 H 1.09007 * 109.48980 * 292.70038 * 12 11 10 38 38 H 1.08998 * 109.63505 * 173.53904 * 13 12 11 39 39 H 1.09005 * 109.62591 * 293.92090 * 13 12 11 40 40 H 0.96998 * 120.00481 * 179.97438 * 18 17 15 41 41 H 1.08993 * 109.62714 * 170.89842 * 23 14 13 42 42 H 1.09003 * 109.62790 * 291.47434 * 23 14 13 43 43 H 1.09002 * 109.48454 * 67.30229 * 24 11 10 44 44 H 1.08994 * 109.49804 * 307.22140 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1698 1.1481 0.0000 4 6 3.6446 1.1501 0.0984 5 6 4.2926 0.2353 0.9292 6 6 5.6698 0.2384 1.0121 7 6 6.4076 1.1534 0.2823 8 6 5.7709 2.0671 -0.5384 9 6 4.3945 2.0705 -0.6347 10 6 2.2606 -1.3050 0.0006 11 7 2.3714 -1.8060 1.3770 12 6 3.0007 -3.1329 1.4053 13 6 3.2624 -3.5397 2.8594 14 7 2.0011 -3.4334 3.6085 15 6 1.5457 -4.4766 4.3698 16 1 0.4841 -4.6369 4.4865 17 6 2.4487 -5.3281 4.9914 18 7 3.7200 -4.9965 5.0687 19 14 1.8594 -6.9450 5.7182 20 1 1.2584 -7.7795 4.6469 21 1 3.0096 -7.6652 6.3208 22 1 0.8414 -6.6751 6.7652 23 6 1.2417 -2.1771 3.5179 24 6 1.0595 -1.8240 2.0379 25 1 -0.3633 0.1012 1.0227 26 1 -0.3634 0.8349 -0.5990 27 1 -0.3633 -0.9363 -0.4235 28 1 1.6321 2.0820 -0.0720 29 1 3.7175 -0.4765 1.5029 30 1 6.1728 -0.4720 1.6514 31 1 7.4852 1.1546 0.3540 32 1 6.3525 2.7791 -1.1052 33 1 3.8986 2.7840 -1.2761 34 1 3.2579 -1.1489 -0.4107 35 1 1.7260 -2.0334 -0.6092 36 1 3.9447 -3.0996 0.8614 37 1 2.3368 -3.8603 0.9380 38 1 3.6226 -4.5679 2.8929 39 1 4.0084 -2.8760 3.2966 40 1 4.3509 -5.5914 5.5034 41 1 0.2660 -2.3044 3.9868 42 1 1.7909 -1.3803 4.0195 43 1 0.4228 -2.5696 1.5618 44 1 0.5958 -0.8413 1.9528 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092936334.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:40 Heat of formation + Delta-G solvation = 67.623585 kcal Electronic energy + Delta-G solvation = -23120.528083 eV Core-core repulsion = 20038.479215 eV Total energy + Delta-G solvation = -3082.048868 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 286.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.70518 -39.40860 -37.20236 -35.18560 -33.13021 -32.19992 -31.65377 -31.22395 -29.16963 -27.47261 -26.30169 -24.20275 -24.00995 -23.15862 -22.63648 -20.85887 -19.26581 -18.70066 -17.51059 -17.04987 -16.43962 -16.38764 -16.11101 -15.50324 -15.39121 -15.27764 -15.04038 -14.84363 -14.44637 -14.30350 -13.98465 -13.81069 -13.39651 -13.18310 -12.99218 -12.86655 -12.59848 -12.51402 -12.50659 -12.29526 -12.03716 -11.90421 -11.75191 -11.57575 -11.50998 -11.36059 -10.58925 -10.44166 -9.66367 -9.27271 -8.93105 -8.59817 -7.87789 -5.38789 0.20727 0.66253 1.46120 1.46665 1.48208 1.55099 2.49910 3.01611 3.15755 3.28814 3.68757 3.80321 3.97344 4.18933 4.19478 4.25408 4.31934 4.35159 4.48012 4.54663 4.58540 4.63094 4.65788 4.69690 4.79437 4.82801 4.87461 4.91332 4.95673 5.03066 5.17735 5.20314 5.26373 5.34777 5.40912 5.55001 5.61662 5.66134 5.71152 5.77274 5.87752 6.05767 6.16787 6.22227 6.31416 6.39499 7.14172 7.82794 8.40035 9.18460 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.021991 B = 0.004460 C = 0.003873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.958579 B = 6275.846810 C = 7227.046935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.116 4.116 3 C -0.112 4.112 4 C -0.074 4.074 5 C -0.135 4.135 6 C -0.146 4.146 7 C -0.128 4.128 8 C -0.134 4.134 9 C -0.116 4.116 10 C 0.083 3.917 11 N -0.523 5.523 12 C 0.048 3.952 13 C 0.192 3.808 14 N -0.611 5.611 15 C -0.270 4.270 16 H 0.064 0.936 17 C -0.044 4.044 18 N -0.934 5.934 19 Si 0.969 3.031 20 H -0.278 1.278 21 H -0.293 1.293 22 H -0.275 1.275 23 C 0.143 3.857 24 C 0.048 3.952 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.060 0.940 28 H 0.140 0.860 29 H 0.158 0.842 30 H 0.112 0.888 31 H 0.134 0.866 32 H 0.144 0.856 33 H 0.142 0.858 34 H 0.078 0.922 35 H 0.035 0.965 36 H 0.075 0.925 37 H 0.021 0.979 38 H 0.049 0.951 39 H 0.000 1.000 40 H 0.251 0.749 41 H 0.059 0.941 42 H 0.012 0.988 43 H 0.024 0.976 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.653 13.868 -14.032 19.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.116 4.116 3 C -0.131 4.131 4 C -0.075 4.075 5 C -0.153 4.153 6 C -0.164 4.164 7 C -0.146 4.146 8 C -0.152 4.152 9 C -0.134 4.134 10 C -0.043 4.043 11 N -0.247 5.247 12 C -0.081 4.081 13 C 0.066 3.934 14 N -0.336 5.336 15 C -0.400 4.400 16 H 0.082 0.918 17 C -0.240 4.240 18 N -0.580 5.580 19 Si 0.796 3.204 20 H -0.203 1.203 21 H -0.219 1.219 22 H -0.200 1.200 23 C 0.018 3.982 24 C -0.081 4.081 25 H 0.095 0.905 26 H 0.103 0.897 27 H 0.079 0.921 28 H 0.158 0.842 29 H 0.175 0.825 30 H 0.130 0.870 31 H 0.152 0.848 32 H 0.162 0.838 33 H 0.159 0.841 34 H 0.097 0.903 35 H 0.053 0.947 36 H 0.094 0.906 37 H 0.040 0.960 38 H 0.067 0.933 39 H 0.018 0.982 40 H 0.060 0.940 41 H 0.077 0.923 42 H 0.030 0.970 43 H 0.043 0.957 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.246 14.066 -13.687 19.666 hybrid contribution -0.209 -1.741 0.403 1.799 sum -1.454 12.326 -13.284 18.180 Atomic orbital electron populations 1.21016 0.90235 1.03227 1.02749 1.21978 0.96380 0.93499 0.99769 1.21626 0.91535 0.98074 1.01837 1.19263 0.93852 0.96513 0.97823 1.22826 0.95524 0.98607 0.98363 1.21320 0.94736 0.99856 1.00488 1.21469 1.00605 0.95641 0.96910 1.21334 0.94784 0.99505 0.99561 1.21527 0.94216 0.98484 0.99202 1.21317 0.99978 0.93958 0.89087 1.61954 1.22461 1.24316 1.15995 1.22604 0.98273 0.88718 0.98484 1.20496 0.87067 0.98231 0.87573 1.44298 1.23943 1.11708 1.53607 1.19451 0.91763 1.05315 1.23518 0.91817 1.25923 0.96125 1.03291 0.98703 1.70151 1.03157 1.37361 1.47281 0.85334 0.76969 0.79708 0.78348 1.20348 1.21908 1.20020 1.21155 0.95146 0.87446 0.94476 1.22769 0.89377 1.01159 0.94766 0.90481 0.89726 0.92077 0.84195 0.82485 0.87014 0.84838 0.83784 0.84068 0.90345 0.94719 0.90617 0.96025 0.93255 0.98229 0.94029 0.92283 0.97035 0.95739 0.87866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.15 8.81 71.24 0.63 -1.52 16 2 C -0.12 -2.71 4.63 -17.60 -0.08 -2.79 16 3 C -0.11 -2.52 9.41 23.65 0.22 -2.30 16 4 C -0.07 -1.93 5.12 -20.12 -0.10 -2.03 16 5 C -0.14 -4.13 7.51 22.52 0.17 -3.96 16 6 C -0.15 -4.23 10.03 22.23 0.22 -4.01 16 7 C -0.13 -3.04 10.04 22.32 0.22 -2.82 16 8 C -0.13 -2.79 10.03 22.23 0.22 -2.57 16 9 C -0.12 -2.52 9.79 22.52 0.22 -2.30 16 10 C 0.08 2.35 4.24 85.56 0.36 2.71 16 11 N -0.52 -17.90 2.21 -899.84 -1.99 -19.89 16 12 C 0.05 1.90 5.61 86.39 0.48 2.39 16 13 C 0.19 9.59 5.36 86.35 0.46 10.05 16 14 N -0.61 -31.68 3.01 -698.12 -2.10 -33.79 16 15 C -0.27 -15.18 9.59 84.03 0.81 -14.37 16 16 H 0.06 3.48 7.86 -2.91 -0.02 3.45 16 17 C -0.04 -2.52 4.99 84.86 0.42 -2.09 16 18 N -0.93 -56.15 11.32 21.65 0.24 -55.91 16 19 Si 0.97 45.24 29.57 68.60 2.03 47.26 16 20 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 21 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 22 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 23 C 0.14 6.17 6.69 86.35 0.58 6.74 16 24 C 0.05 1.64 4.86 86.38 0.42 2.06 16 25 H 0.08 1.43 6.33 -2.38 -0.02 1.42 16 26 H 0.08 1.19 8.11 -2.39 -0.02 1.17 16 27 H 0.06 1.15 8.05 -2.39 -0.02 1.13 16 28 H 0.14 2.44 8.06 -2.91 -0.02 2.42 16 29 H 0.16 5.47 4.31 -2.91 -0.01 5.46 16 30 H 0.11 3.30 8.06 -2.91 -0.02 3.27 16 31 H 0.13 2.54 8.06 -2.91 -0.02 2.52 16 32 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 33 H 0.14 2.27 8.06 -2.91 -0.02 2.24 16 34 H 0.08 2.31 5.69 -2.39 -0.01 2.30 16 35 H 0.03 0.97 8.08 -2.38 -0.02 0.95 16 36 H 0.08 2.72 8.11 -2.39 -0.02 2.70 16 37 H 0.02 0.87 8.14 -2.38 -0.02 0.85 16 38 H 0.05 2.74 6.41 -2.39 -0.02 2.73 16 39 H 0.00 -0.02 8.14 -2.38 -0.02 -0.04 16 40 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 41 H 0.06 2.43 7.95 -2.39 -0.02 2.41 16 42 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 43 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.10 2.96 4.27 -2.39 -0.01 2.95 16 Total: -1.00 -64.87 340.49 4.41 -60.45 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: 0.97 Total: 18.68 kcal Atomic # 6 Polarization: -22.07 SS G_CDS: 5.26 Total: -16.81 kcal Atomic # 7 Polarization: -105.74 SS G_CDS: -3.85 Total: -109.59 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.26 kcal Total: -64.87 4.41 -60.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092936334.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.078 kcal (2) G-P(sol) polarization free energy of solvation -64.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds