Wall clock time and date at job start Tue Mar 31 2020 02:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46501 * 119.99694 * 2 1 4 4 C 1.50699 * 109.47013 * 269.99709 * 3 2 1 5 5 H 1.08003 * 120.00128 * 0.02562 * 4 3 2 6 6 C 1.37885 * 120.00031 * 180.02562 * 4 3 2 7 7 N 1.31514 * 119.99637 * 359.97438 * 6 4 3 8 8 Si 1.86793 * 120.00005 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.47328 * 59.99181 * 8 6 4 10 10 H 1.48504 * 109.47226 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.46984 * 299.99678 * 8 6 4 12 12 C 1.34779 * 120.00093 * 179.97438 * 2 1 3 13 13 O 1.21278 * 119.99676 * 180.02562 * 12 2 1 14 14 C 1.50697 * 119.99899 * 0.02562 * 12 2 1 15 15 C 1.52998 * 109.46999 * 180.02562 * 14 12 2 16 16 N 1.46902 * 109.47296 * 179.97438 * 15 14 12 17 17 C 1.47010 * 110.99738 * 293.63438 * 16 15 14 18 18 C 1.53101 * 109.25772 * 177.60825 * 17 16 15 19 19 O 1.43005 * 109.26043 * 56.84635 * 18 17 16 20 20 C 1.43023 * 113.73627 * 301.33198 * 19 18 17 21 21 H 1.08999 * 109.50605 * 298.72944 * 20 19 18 22 22 C 1.53009 * 109.50500 * 178.60683 * 20 19 18 23 23 O 1.42896 * 109.47156 * 65.21506 * 22 20 19 24 24 C 1.47005 * 111.00075 * 169.99680 * 16 15 14 25 25 H 1.09002 * 109.47207 * 270.00239 * 1 2 3 26 26 H 1.09003 * 109.47437 * 30.00420 * 1 2 3 27 27 H 1.09003 * 109.47185 * 149.99977 * 1 2 3 28 28 H 1.08996 * 109.47670 * 29.99664 * 3 2 1 29 29 H 1.09006 * 109.46985 * 149.99733 * 3 2 1 30 30 H 0.96998 * 119.99604 * 180.02562 * 7 6 4 31 31 H 1.08996 * 109.47501 * 59.99586 * 14 12 2 32 32 H 1.09002 * 109.46964 * 299.99191 * 14 12 2 33 33 H 1.08996 * 109.47342 * 59.99476 * 15 14 12 34 34 H 1.09002 * 109.46592 * 299.99407 * 15 14 12 35 35 H 1.09005 * 109.50762 * 297.54365 * 17 16 15 36 36 H 1.09005 * 109.51385 * 57.62757 * 17 16 15 37 37 H 1.09007 * 109.50597 * 176.78233 * 18 17 16 38 38 H 1.09004 * 109.50429 * 296.90847 * 18 17 16 39 39 H 1.08996 * 109.46719 * 185.21576 * 22 20 19 40 40 H 1.08997 * 109.46756 * 305.21683 * 22 20 19 41 41 H 0.96696 * 114.00139 * 179.97438 * 23 22 20 42 42 H 1.09001 * 109.50788 * 62.45816 * 24 16 15 43 43 H 1.09007 * 109.54578 * 302.34788 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0974 1.0961 -2.2417 6 6 3.1268 2.8775 -1.6728 7 7 3.5541 3.6177 -0.6732 8 14 3.4376 3.4171 -3.4339 9 1 2.1398 3.5952 -4.1334 10 1 4.1801 4.7031 -3.4340 11 1 4.2394 2.3820 -4.1345 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1671 0.0010 14 6 1.3854 -2.4723 0.0005 15 6 2.3797 -3.6352 0.0018 16 7 1.6452 -4.9074 0.0024 17 6 0.9048 -5.0876 1.2596 18 6 0.1084 -6.3936 1.1939 19 8 1.0024 -7.4785 0.9318 20 6 1.7396 -7.3359 -0.2855 21 1 1.0483 -7.2994 -1.1275 22 6 2.6862 -8.5264 -0.4520 23 8 1.9224 -9.7230 -0.6161 24 6 2.5524 -6.0396 -0.2347 25 1 -0.3634 0.0000 1.0277 26 1 -0.3634 0.8900 -0.5139 27 1 -0.3634 -0.8900 -0.5138 28 1 1.6084 2.0284 0.5137 29 1 3.1499 1.1385 0.5139 30 1 4.0308 4.4436 -0.8504 31 1 0.7591 -2.5303 -0.8896 32 1 0.7585 -2.5299 0.8904 33 1 3.0057 -3.5770 0.8922 34 1 3.0069 -3.5778 -0.8878 35 1 1.6067 -5.1308 2.0925 36 1 0.2213 -4.2506 1.4028 37 1 -0.3969 -6.5600 2.1453 38 1 -0.6303 -6.3295 0.3950 39 1 3.3129 -8.3721 -1.3303 40 1 3.3163 -8.6160 0.4328 41 1 2.4588 -10.5198 -0.7277 42 1 3.2807 -6.0981 0.5742 43 1 3.0719 -5.8983 -1.1826 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000168013054.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:24 Heat of formation + Delta-G solvation = -122.682213 kcal Electronic energy + Delta-G solvation = -23038.927224 eV Core-core repulsion = 19505.484063 eV Total energy + Delta-G solvation = -3533.443161 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.03573 -38.94930 -37.04874 -35.96909 -34.79163 -32.67805 -32.24713 -31.10795 -28.40579 -27.54433 -25.90364 -25.16462 -23.84754 -22.76708 -21.33410 -20.58199 -18.38372 -17.65660 -16.91896 -16.78313 -16.53791 -15.78832 -15.61559 -15.45035 -15.34528 -14.76679 -14.52229 -14.26267 -14.12091 -13.72970 -13.39308 -13.11762 -12.43106 -12.31902 -12.19843 -12.10980 -11.98714 -11.80620 -11.53266 -11.31364 -11.16212 -10.92778 -10.89487 -10.65774 -10.55248 -10.36878 -10.16283 -9.82152 -9.64976 -8.91585 -8.55728 -8.43869 -7.65100 -6.04817 -4.09685 3.31386 3.33700 3.35736 3.38533 3.44322 3.47636 3.93836 4.12082 4.44748 4.65858 4.74208 4.81341 4.85535 4.94884 5.00785 5.12906 5.16558 5.22291 5.28618 5.30793 5.32816 5.39292 5.56096 5.62720 5.65526 5.76382 5.78398 5.91633 6.04068 6.05990 6.22132 6.77138 6.80800 6.95563 7.05090 7.29494 7.43224 7.53379 7.91461 8.22947 8.41222 8.89308 9.08547 9.55350 11.03293 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.029859 B = 0.002939 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.504897 B = 9526.295491 C =10028.501139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.603 5.603 3 C 0.245 3.755 4 C -0.527 4.527 5 H 0.057 0.943 6 C 0.060 3.940 7 N -0.896 5.896 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.504 3.496 13 O -0.546 6.546 14 C -0.135 4.135 15 C 0.073 3.927 16 N -0.537 5.537 17 C 0.011 3.989 18 C 0.065 3.935 19 O -0.376 6.376 20 C 0.095 3.905 21 H 0.075 0.925 22 C 0.084 3.916 23 O -0.566 6.566 24 C 0.027 3.973 25 H 0.043 0.957 26 H 0.073 0.927 27 H 0.058 0.942 28 H 0.032 0.968 29 H 0.043 0.957 30 H 0.264 0.736 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.045 0.955 34 H 0.086 0.914 35 H 0.044 0.956 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.054 0.946 41 H 0.379 0.621 42 H 0.046 0.954 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.640 -21.703 2.688 22.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.335 5.335 3 C 0.125 3.875 4 C -0.565 4.565 5 H 0.075 0.925 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 C 0.291 3.709 13 O -0.424 6.424 14 C -0.175 4.175 15 C -0.055 4.055 16 N -0.262 5.262 17 C -0.117 4.117 18 C -0.012 4.012 19 O -0.294 6.294 20 C 0.036 3.964 21 H 0.092 0.908 22 C 0.006 3.994 23 O -0.371 6.371 24 C -0.102 4.102 25 H 0.062 0.938 26 H 0.092 0.908 27 H 0.077 0.923 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.114 0.886 32 H 0.102 0.898 33 H 0.063 0.937 34 H 0.104 0.896 35 H 0.062 0.938 36 H 0.109 0.891 37 H 0.116 0.884 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.072 0.928 41 H 0.226 0.774 42 H 0.064 0.936 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.718 -21.209 2.539 22.392 hybrid contribution 1.124 0.423 -0.525 1.311 sum -5.594 -20.786 2.014 21.620 Atomic orbital electron populations 1.21643 0.81414 1.02673 1.00349 1.48164 1.06213 1.07879 1.71252 1.19283 0.92539 0.78138 0.97496 1.21399 1.36556 1.06304 0.92282 0.92524 1.24946 0.95352 0.96384 0.97477 1.69925 1.38356 1.14366 1.30809 0.86547 0.78367 0.77812 0.84621 1.20236 1.21167 1.20169 1.20272 0.88053 0.85149 0.77472 1.90664 1.13996 1.87366 1.50389 1.21636 0.99239 0.92654 1.04001 1.21835 0.94612 0.86326 1.02694 1.62160 1.27839 1.02182 1.34052 1.22899 0.98483 0.99300 0.91023 1.22669 0.91646 0.85160 1.01768 1.88025 1.56789 1.43965 1.40670 1.22111 0.93484 0.92284 0.88476 0.90756 1.22120 0.92595 0.84497 1.00191 1.86529 1.37295 1.17118 1.96144 1.22643 0.94601 0.90476 1.02469 0.93829 0.90797 0.92301 0.95039 0.93895 0.92658 0.88609 0.89813 0.93698 0.89597 0.93784 0.89121 0.88399 0.92195 0.91853 0.92779 0.77392 0.93614 0.89205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.31 10.24 59.85 0.61 1.92 16 2 N -0.60 -12.80 2.86 -182.95 -0.52 -13.32 16 3 C 0.24 6.46 5.16 -5.19 -0.03 6.43 16 4 C -0.53 -15.04 9.39 -34.44 -0.32 -15.37 16 5 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 7 N -0.90 -26.77 13.29 55.43 0.74 -26.04 16 8 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 C 0.50 10.37 7.67 -10.99 -0.08 10.29 16 13 O -0.55 -13.64 15.56 5.56 0.09 -13.56 16 14 C -0.13 -1.95 4.19 -27.89 -0.12 -2.07 16 15 C 0.07 1.02 4.25 -3.82 -0.02 1.00 16 16 N -0.54 -6.34 4.73 -234.31 -1.11 -7.45 16 17 C 0.01 0.12 5.44 -3.71 -0.02 0.10 16 18 C 0.06 0.63 7.01 37.21 0.26 0.89 16 19 O -0.38 -4.49 10.44 -39.72 -0.41 -4.91 16 20 C 0.09 0.99 3.09 -26.68 -0.08 0.91 16 21 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 22 C 0.08 0.70 6.71 37.16 0.25 0.95 16 23 O -0.57 -5.15 13.63 -39.72 -0.54 -5.69 16 24 C 0.03 0.28 4.93 -3.72 -0.02 0.26 16 25 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 27 H 0.06 0.75 6.44 -51.93 -0.33 0.42 16 28 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 29 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 30 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 31 H 0.10 1.29 7.40 -51.93 -0.38 0.91 16 32 H 0.08 1.03 6.48 -51.93 -0.34 0.69 16 33 H 0.04 0.68 8.08 -51.93 -0.42 0.26 16 34 H 0.09 1.30 8.00 -51.93 -0.42 0.89 16 35 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.09 0.85 6.38 -51.93 -0.33 0.51 16 37 H 0.10 0.77 8.14 -51.92 -0.42 0.35 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.38 1.53 9.12 45.56 0.42 1.95 16 42 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.09 0.86 8.09 -51.93 -0.42 0.44 16 LS Contribution 349.69 15.07 5.27 5.27 Total: -1.00 -35.60 349.69 -7.55 -43.16 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -6.38 Total: -1.33 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: 0.34 Total: 6.95 kcal Atomic # 7 Polarization: -45.91 SS G_CDS: -0.89 Total: -46.81 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: -0.87 Total: -24.16 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -35.60 -7.55 -43.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168013054.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.527 kcal (2) G-P(sol) polarization free energy of solvation -35.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds