Wall clock time and date at job start Tue Mar 31 2020 02:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46501 * 119.99694 * 2 1 4 4 C 1.50699 * 109.47013 * 269.99709 * 3 2 1 5 5 H 1.08003 * 120.00128 * 0.02562 * 4 3 2 6 6 C 1.37885 * 120.00031 * 180.02562 * 4 3 2 7 7 N 1.31514 * 119.99637 * 359.97438 * 6 4 3 8 8 Si 1.86793 * 120.00005 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.47328 * 59.99181 * 8 6 4 10 10 H 1.48504 * 109.47226 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.46984 * 299.99678 * 8 6 4 12 12 C 1.34779 * 120.00093 * 179.97438 * 2 1 3 13 13 O 1.21278 * 119.99676 * 180.02562 * 12 2 1 14 14 C 1.50697 * 119.99899 * 0.02562 * 12 2 1 15 15 C 1.52998 * 109.46999 * 180.02562 * 14 12 2 16 16 N 1.46902 * 109.47296 * 179.97438 * 15 14 12 17 17 C 1.47010 * 110.99738 * 293.63438 * 16 15 14 18 18 C 1.53101 * 109.25772 * 177.60825 * 17 16 15 19 19 O 1.43005 * 109.26043 * 56.84635 * 18 17 16 20 20 C 1.43023 * 113.73627 * 301.33198 * 19 18 17 21 21 H 1.08999 * 109.50605 * 298.72944 * 20 19 18 22 22 C 1.53009 * 109.50500 * 178.60683 * 20 19 18 23 23 O 1.42896 * 109.47156 * 65.21506 * 22 20 19 24 24 C 1.47005 * 111.00075 * 169.99680 * 16 15 14 25 25 H 1.09002 * 109.47207 * 270.00239 * 1 2 3 26 26 H 1.09003 * 109.47437 * 30.00420 * 1 2 3 27 27 H 1.09003 * 109.47185 * 149.99977 * 1 2 3 28 28 H 1.08996 * 109.47670 * 29.99664 * 3 2 1 29 29 H 1.09006 * 109.46985 * 149.99733 * 3 2 1 30 30 H 0.96998 * 119.99604 * 180.02562 * 7 6 4 31 31 H 1.08996 * 109.47501 * 59.99586 * 14 12 2 32 32 H 1.09002 * 109.46964 * 299.99191 * 14 12 2 33 33 H 1.08996 * 109.47342 * 59.99476 * 15 14 12 34 34 H 1.09002 * 109.46592 * 299.99407 * 15 14 12 35 35 H 1.09005 * 109.50762 * 297.54365 * 17 16 15 36 36 H 1.09005 * 109.51385 * 57.62757 * 17 16 15 37 37 H 1.09007 * 109.50597 * 176.78233 * 18 17 16 38 38 H 1.09004 * 109.50429 * 296.90847 * 18 17 16 39 39 H 1.08996 * 109.46719 * 185.21576 * 22 20 19 40 40 H 1.08997 * 109.46756 * 305.21683 * 22 20 19 41 41 H 0.96696 * 114.00139 * 179.97438 * 23 22 20 42 42 H 1.09001 * 109.50788 * 62.45816 * 24 16 15 43 43 H 1.09007 * 109.54578 * 302.34788 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0974 1.0961 -2.2417 6 6 3.1268 2.8775 -1.6728 7 7 3.5541 3.6177 -0.6732 8 14 3.4376 3.4171 -3.4339 9 1 2.1398 3.5952 -4.1334 10 1 4.1801 4.7031 -3.4340 11 1 4.2394 2.3820 -4.1345 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1671 0.0010 14 6 1.3854 -2.4723 0.0005 15 6 2.3797 -3.6352 0.0018 16 7 1.6452 -4.9074 0.0024 17 6 0.9048 -5.0876 1.2596 18 6 0.1084 -6.3936 1.1939 19 8 1.0024 -7.4785 0.9318 20 6 1.7396 -7.3359 -0.2855 21 1 1.0483 -7.2994 -1.1275 22 6 2.6862 -8.5264 -0.4520 23 8 1.9224 -9.7230 -0.6161 24 6 2.5524 -6.0396 -0.2347 25 1 -0.3634 0.0000 1.0277 26 1 -0.3634 0.8900 -0.5139 27 1 -0.3634 -0.8900 -0.5138 28 1 1.6084 2.0284 0.5137 29 1 3.1499 1.1385 0.5139 30 1 4.0308 4.4436 -0.8504 31 1 0.7591 -2.5303 -0.8896 32 1 0.7585 -2.5299 0.8904 33 1 3.0057 -3.5770 0.8922 34 1 3.0069 -3.5778 -0.8878 35 1 1.6067 -5.1308 2.0925 36 1 0.2213 -4.2506 1.4028 37 1 -0.3969 -6.5600 2.1453 38 1 -0.6303 -6.3295 0.3950 39 1 3.3129 -8.3721 -1.3303 40 1 3.3163 -8.6160 0.4328 41 1 2.4588 -10.5198 -0.7277 42 1 3.2807 -6.0981 0.5742 43 1 3.0719 -5.8983 -1.1826 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168013054.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:23 Heat of formation + Delta-G solvation = -152.231290 kcal Electronic energy + Delta-G solvation = -23040.208568 eV Core-core repulsion = 19505.484063 eV Total energy + Delta-G solvation = -3534.724505 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.02793 -40.41547 -37.78372 -36.93654 -36.50547 -34.74912 -33.09570 -32.28753 -29.91189 -28.79183 -27.31751 -26.30804 -25.09532 -24.15442 -22.46226 -21.43529 -19.93073 -18.70767 -18.32302 -18.12164 -17.60735 -17.13887 -16.88478 -16.81206 -16.31952 -16.11715 -15.80628 -15.48433 -14.98607 -14.77593 -14.65245 -14.07875 -14.04675 -13.79007 -13.56302 -13.44268 -13.24147 -13.06445 -12.91974 -12.77369 -12.57102 -12.39989 -12.19664 -12.09439 -11.87360 -11.72709 -11.49916 -10.98791 -10.67455 -10.64869 -10.60607 -9.50576 -9.42168 -8.23234 -6.38405 1.36360 1.40598 1.48033 1.83009 2.22229 2.39140 2.72050 2.78062 3.06184 3.31447 3.78103 3.85346 3.92005 4.01143 4.04924 4.12575 4.22127 4.29176 4.38802 4.45259 4.50884 4.52900 4.61308 4.62827 4.72330 4.82853 4.88505 4.90578 4.92443 4.98098 5.01732 5.06092 5.21967 5.55255 5.81725 5.83308 5.88486 6.05232 6.18715 6.68666 6.78791 6.90450 7.27295 7.47599 8.83703 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.029859 B = 0.002939 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.504897 B = 9526.295491 C =10028.501139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.611 5.611 3 C 0.258 3.742 4 C -0.544 4.544 5 H 0.054 0.946 6 C 0.006 3.994 7 N -0.930 5.930 8 Si 0.969 3.031 9 H -0.259 1.259 10 H -0.278 1.278 11 H -0.277 1.277 12 C 0.494 3.506 13 O -0.602 6.602 14 C -0.115 4.115 15 C 0.081 3.919 16 N -0.536 5.536 17 C 0.010 3.990 18 C 0.064 3.936 19 O -0.396 6.396 20 C 0.094 3.906 21 H 0.067 0.933 22 C 0.085 3.915 23 O -0.588 6.588 24 C 0.027 3.973 25 H 0.071 0.929 26 H 0.064 0.936 27 H 0.096 0.904 28 H 0.023 0.977 29 H -0.004 1.004 30 H 0.267 0.733 31 H 0.117 0.883 32 H 0.116 0.884 33 H 0.027 0.973 34 H 0.069 0.931 35 H 0.036 0.964 36 H 0.107 0.893 37 H 0.117 0.883 38 H 0.064 0.936 39 H 0.085 0.915 40 H 0.057 0.943 41 H 0.399 0.601 42 H 0.041 0.959 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.350 -22.950 1.715 24.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.342 5.342 3 C 0.136 3.864 4 C -0.582 4.582 5 H 0.072 0.928 6 C -0.193 4.193 7 N -0.569 5.569 8 Si 0.793 3.207 9 H -0.184 1.184 10 H -0.203 1.203 11 H -0.203 1.203 12 C 0.283 3.717 13 O -0.484 6.484 14 C -0.155 4.155 15 C -0.047 4.047 16 N -0.261 5.261 17 C -0.118 4.118 18 C -0.013 4.013 19 O -0.315 6.315 20 C 0.036 3.964 21 H 0.085 0.915 22 C 0.007 3.993 23 O -0.397 6.397 24 C -0.102 4.102 25 H 0.090 0.910 26 H 0.083 0.917 27 H 0.115 0.885 28 H 0.041 0.959 29 H 0.014 0.986 30 H 0.076 0.924 31 H 0.135 0.865 32 H 0.134 0.866 33 H 0.046 0.954 34 H 0.087 0.913 35 H 0.054 0.946 36 H 0.125 0.875 37 H 0.135 0.865 38 H 0.082 0.918 39 H 0.103 0.897 40 H 0.075 0.925 41 H 0.250 0.750 42 H 0.060 0.940 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.480 -22.492 1.570 24.089 hybrid contribution 1.642 0.763 -0.162 1.818 sum -6.838 -21.728 1.408 22.822 Atomic orbital electron populations 1.21954 0.77713 1.04110 1.02649 1.48207 1.08529 1.06382 1.71124 1.18752 0.91072 0.80528 0.96031 1.21685 1.36896 1.06604 0.93043 0.92805 1.25892 0.94884 0.96422 1.02097 1.70047 1.38896 1.14817 1.33162 0.85452 0.78883 0.77349 0.79040 1.18391 1.20343 1.20260 1.21350 0.87771 0.86710 0.75829 1.90634 1.16770 1.88280 1.52714 1.21545 0.98820 0.88705 1.06412 1.21635 0.94355 0.87547 1.01154 1.62167 1.27586 1.01432 1.34905 1.22999 0.98450 1.00406 0.89973 1.22811 0.91295 0.84231 1.02961 1.88007 1.57287 1.44947 1.41272 1.22179 0.93506 0.92949 0.87755 0.91513 1.22152 0.92089 0.83735 1.01348 1.86464 1.38710 1.18251 1.96233 1.22685 0.94498 0.90278 1.02721 0.91029 0.91698 0.88548 0.95871 0.98567 0.92378 0.86457 0.86597 0.95443 0.91264 0.94569 0.87537 0.86485 0.91804 0.89679 0.92502 0.75049 0.94036 0.88440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.24 10.24 127.77 1.31 3.55 16 2 N -0.61 -25.81 2.86 -851.12 -2.43 -28.24 16 3 C 0.26 14.06 5.16 85.63 0.44 14.50 16 4 C -0.54 -31.61 9.39 25.60 0.24 -31.37 16 5 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 6 C 0.01 0.34 5.46 84.66 0.46 0.81 16 7 N -0.93 -56.71 13.29 21.45 0.28 -56.43 16 8 Si 0.97 45.04 29.54 68.60 2.03 47.06 16 9 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 12 C 0.49 20.28 7.67 87.66 0.67 20.95 16 13 O -0.60 -31.20 15.56 -3.02 -0.05 -31.25 16 14 C -0.11 -3.07 4.19 29.85 0.13 -2.95 16 15 C 0.08 2.21 4.25 86.30 0.37 2.57 16 16 N -0.54 -11.71 4.73 -895.22 -4.23 -15.94 16 17 C 0.01 0.18 5.44 86.32 0.47 0.65 16 18 C 0.06 1.10 7.01 72.02 0.50 1.60 16 19 O -0.40 -8.85 10.44 -144.69 -1.51 -10.36 16 20 C 0.09 1.83 3.09 30.63 0.09 1.93 16 21 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 22 C 0.08 1.28 6.71 71.99 0.48 1.76 16 23 O -0.59 -9.78 13.63 -144.69 -1.97 -11.75 16 24 C 0.03 0.53 4.93 86.32 0.43 0.95 16 25 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.06 2.00 8.07 -2.39 -0.02 1.98 16 27 H 0.10 2.06 6.44 -2.39 -0.02 2.04 16 28 H 0.02 1.28 8.07 -2.39 -0.02 1.26 16 29 H 0.00 -0.24 7.42 -2.38 -0.02 -0.26 16 30 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 31 H 0.12 2.72 7.40 -2.39 -0.02 2.70 16 32 H 0.12 2.40 6.48 -2.39 -0.02 2.38 16 33 H 0.03 0.83 8.08 -2.39 -0.02 0.81 16 34 H 0.07 2.10 8.00 -2.39 -0.02 2.09 16 35 H 0.04 0.74 8.14 -2.38 -0.02 0.72 16 36 H 0.11 1.61 6.38 -2.38 -0.02 1.59 16 37 H 0.12 1.53 8.14 -2.38 -0.02 1.51 16 38 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.06 0.81 8.14 -2.39 -0.02 0.80 16 41 H 0.40 2.56 9.12 -74.06 -0.68 1.89 16 42 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.10 1.76 8.09 -2.38 -0.02 1.74 16 Total: -1.00 -79.87 349.69 -1.97 -81.84 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: 0.32 Total: 10.10 kcal Atomic # 6 Polarization: 9.36 SS G_CDS: 5.59 Total: 14.96 kcal Atomic # 7 Polarization: -94.23 SS G_CDS: -6.38 Total: -100.60 kcal Atomic # 8 Polarization: -49.83 SS G_CDS: -3.53 Total: -53.36 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.06 kcal Total: -79.87 -1.97 -81.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168013054.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.396 kcal (2) G-P(sol) polarization free energy of solvation -79.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds