Wall clock time and date at job start Tue Mar 31 2020 03:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42897 * 114.00130 * 2 1 4 4 C 1.52995 * 109.47404 * 180.02562 * 3 2 1 5 5 O 1.42901 * 109.47211 * 65.00274 * 4 3 2 6 6 C 1.42901 * 114.00411 * 180.02562 * 5 4 3 7 7 H 1.08999 * 109.49837 * 329.91794 * 6 5 4 8 8 C 1.53119 * 109.50339 * 89.99408 * 6 5 4 9 9 C 1.53124 * 109.15796 * 177.63376 * 8 6 5 10 10 C 1.53037 * 109.28148 * 302.35024 * 9 8 6 11 11 N 1.46844 * 109.52152 * 59.17731 * 10 9 8 12 12 C 1.46906 * 110.99887 * 174.16043 * 11 10 9 13 13 C 1.50706 * 109.46929 * 66.04691 * 12 11 10 14 14 O 1.21290 * 119.99857 * 359.97438 * 13 12 11 15 15 N 1.34768 * 119.99753 * 179.97438 * 13 12 11 16 16 C 1.37101 * 120.00038 * 179.97438 * 15 13 12 17 17 H 1.08001 * 119.99491 * 0.02562 * 16 15 13 18 18 C 1.38950 * 120.00236 * 180.02562 * 16 15 13 19 19 N 1.31415 * 119.99936 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00013 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47337 * 59.99183 * 20 18 16 22 22 H 1.48496 * 109.46923 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47051 * 299.99409 * 20 18 16 24 24 C 1.46850 * 111.19991 * 298.25708 * 11 10 9 25 25 H 1.09000 * 109.46876 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46689 * 299.99662 * 1 2 3 27 27 H 1.08992 * 109.47082 * 59.99513 * 1 2 3 28 28 H 1.09007 * 109.47122 * 60.00411 * 3 2 1 29 29 H 1.08997 * 109.47193 * 300.00730 * 3 2 1 30 30 H 1.09002 * 109.47078 * 305.00306 * 4 3 2 31 31 H 1.09001 * 109.47426 * 185.00316 * 4 3 2 32 32 H 1.09001 * 109.51997 * 57.73565 * 8 6 5 33 33 H 1.08999 * 109.52624 * 297.54171 * 8 6 5 34 34 H 1.08997 * 109.50392 * 182.40446 * 9 8 6 35 35 H 1.09000 * 109.49712 * 62.29080 * 9 8 6 36 36 H 1.08995 * 109.46089 * 299.16330 * 10 9 8 37 37 H 1.08993 * 109.46053 * 179.19513 * 10 9 8 38 38 H 1.08998 * 109.47121 * 186.04358 * 12 11 10 39 39 H 1.09000 * 109.47141 * 306.04556 * 12 11 10 40 40 H 0.97005 * 120.00524 * 0.02562 * 15 13 12 41 41 H 0.96994 * 119.99987 * 179.97438 * 19 18 16 42 42 H 1.09005 * 109.46314 * 181.76064 * 24 11 10 43 43 H 1.08998 * 109.46244 * 301.72632 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 8 3.9649 0.5797 -1.2220 6 6 5.3811 0.4192 -1.3247 7 1 5.8786 1.2112 -0.7650 8 6 5.7842 -0.9424 -0.7518 9 6 7.2945 -1.1310 -0.9194 10 6 7.6571 -1.0126 -2.4015 11 7 7.2519 0.3071 -2.9019 12 6 7.7081 0.5089 -4.2837 13 6 6.9927 -0.4551 -5.1948 14 8 6.1829 -1.2339 -4.7378 15 7 7.2527 -0.4518 -6.5171 16 6 6.6022 -1.3291 -7.3459 17 1 5.8812 -2.0226 -6.9390 18 6 6.8707 -1.3261 -8.7092 19 7 7.7477 -0.4819 -9.2043 20 14 5.9839 -2.5210 -9.8384 21 1 4.5203 -2.2824 -9.7603 22 1 6.4446 -2.3165 -11.2352 23 1 6.2816 -3.9136 -9.4174 24 6 5.7991 0.4926 -2.7950 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 1.6887 1.8463 0.8901 29 1 1.6886 1.8464 -0.8899 30 1 3.8515 0.5682 0.8409 31 1 3.9785 2.1765 0.0890 32 1 5.2569 -1.7328 -1.2860 33 1 5.5273 -0.9827 0.3067 34 1 7.5811 -2.1163 -0.5522 35 1 7.8220 -0.3633 -0.3533 36 1 7.1399 -1.7892 -2.9650 37 1 8.7336 -1.1322 -2.5226 38 1 7.4897 1.5311 -4.5928 39 1 8.7824 0.3337 -4.3409 40 1 7.9006 0.1709 -6.8825 41 1 7.9354 -0.4800 -10.1559 42 1 5.5263 1.4663 -3.2020 43 1 5.2907 -0.2910 -3.3567 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179354113.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:02 Heat of formation + Delta-G solvation = -124.065418 kcal Electronic energy + Delta-G solvation = -23409.786370 eV Core-core repulsion = 19876.283228 eV Total energy + Delta-G solvation = -3533.503141 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.59652 -38.43532 -37.59450 -36.24744 -33.96984 -32.58791 -31.26280 -30.83068 -28.93738 -27.26277 -26.37284 -24.64228 -22.89782 -22.58769 -22.13386 -19.72705 -19.13203 -17.84515 -16.96341 -16.76493 -16.04320 -15.78314 -15.51218 -15.03421 -14.76174 -14.63408 -14.51955 -13.99528 -13.85095 -13.53329 -13.20390 -12.98792 -12.75585 -12.45140 -12.20882 -11.81548 -11.66123 -11.52440 -11.29028 -11.15622 -11.01456 -10.60332 -10.58444 -10.45048 -10.42643 -10.23077 -10.19434 -9.81719 -9.43614 -9.26169 -9.16634 -7.97646 -7.36539 -6.43446 -3.84643 3.18527 3.24852 3.29588 3.57981 3.64939 3.85430 4.16819 4.54233 4.87125 4.99268 5.03383 5.09325 5.12279 5.17955 5.21021 5.22894 5.26192 5.32773 5.38481 5.50881 5.53320 5.64277 5.68630 5.85102 5.91767 6.00636 6.06646 6.12320 6.22714 6.28584 6.37396 6.44514 6.68690 6.84436 7.00576 7.32153 7.41144 7.53176 7.59772 8.03371 8.58474 9.15269 9.51423 10.02535 10.73115 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.016686 B = 0.003736 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.697552 B = 7493.565566 C = 8580.820411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.381 6.381 3 C 0.063 3.937 4 C 0.065 3.935 5 O -0.372 6.372 6 C 0.099 3.901 7 H 0.058 0.942 8 C -0.138 4.138 9 C -0.109 4.109 10 C 0.038 3.962 11 N -0.512 5.512 12 C 0.043 3.957 13 C 0.406 3.594 14 O -0.590 6.590 15 N -0.557 5.557 16 C -0.302 4.302 17 H 0.102 0.898 18 C 0.024 3.976 19 N -0.900 5.900 20 Si 0.930 3.070 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.273 1.273 24 C 0.037 3.963 25 H 0.085 0.915 26 H 0.037 0.963 27 H 0.041 0.959 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.393 0.607 41 H 0.273 0.727 42 H 0.066 0.934 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.195 5.201 17.361 18.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.300 6.300 3 C -0.014 4.014 4 C -0.013 4.013 5 O -0.290 6.290 6 C 0.041 3.959 7 H 0.076 0.924 8 C -0.176 4.176 9 C -0.147 4.147 10 C -0.089 4.089 11 N -0.236 5.236 12 C -0.089 4.089 13 C 0.191 3.809 14 O -0.477 6.477 15 N -0.192 5.192 16 C -0.432 4.432 17 H 0.120 0.880 18 C -0.178 4.178 19 N -0.540 5.540 20 Si 0.757 3.243 21 H -0.199 1.199 22 H -0.209 1.209 23 H -0.199 1.199 24 C -0.090 4.090 25 H 0.104 0.896 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.226 0.774 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.462 4.850 17.608 19.063 hybrid contribution -0.409 -0.390 -1.205 1.331 sum -5.871 4.460 16.404 17.984 Atomic orbital electron populations 1.22736 0.81309 1.02803 0.99699 1.87991 1.19381 1.27311 1.95320 1.22571 0.92707 0.85470 1.00614 1.22493 0.93035 0.97239 0.88485 1.87985 1.22423 1.81608 1.37009 1.22017 0.80292 0.96172 0.97373 0.92376 1.22032 0.96586 0.98635 1.00343 1.21486 0.95278 1.01217 0.96699 1.22261 1.00102 0.91682 0.94896 1.62341 1.13214 1.29815 1.18217 1.22032 1.00012 0.99455 0.87370 1.21105 0.87525 0.88460 0.83767 1.90410 1.38663 1.43803 1.74862 1.42046 1.37805 1.33645 1.05701 1.19680 1.20843 1.14422 0.88251 0.88006 1.25278 0.97014 0.97945 0.97557 1.69603 1.33381 1.36559 1.14502 0.85925 0.79564 0.80306 0.78487 1.19869 1.20925 1.19884 1.22307 0.88749 1.03482 0.94500 0.89644 0.94418 0.93987 0.92164 0.92357 0.92758 0.92005 0.90926 0.92530 0.91645 0.91895 0.91204 0.91630 0.89259 0.89212 0.77384 0.91744 0.91575 0.88737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.38 -5.00 10.67 -40.08 -0.43 -5.43 16 3 C 0.06 0.68 6.32 37.15 0.23 0.91 16 4 C 0.06 0.76 6.13 37.15 0.23 0.99 16 5 O -0.37 -5.94 9.96 -40.08 -0.40 -6.34 16 6 C 0.10 1.53 2.77 -26.65 -0.07 1.46 16 7 H 0.06 0.81 7.79 -51.93 -0.40 0.40 16 8 C -0.14 -2.04 5.62 -26.61 -0.15 -2.19 16 9 C -0.11 -1.51 6.09 -26.65 -0.16 -1.67 16 10 C 0.04 0.64 5.09 -3.84 -0.02 0.62 16 11 N -0.51 -8.83 4.86 -236.11 -1.15 -9.97 16 12 C 0.04 0.78 5.86 -4.97 -0.03 0.75 16 13 C 0.41 9.45 7.20 -10.99 -0.08 9.37 16 14 O -0.59 -15.46 11.20 5.55 0.06 -15.40 16 15 N -0.56 -14.08 5.29 -10.96 -0.06 -14.14 16 16 C -0.30 -8.44 9.68 -14.93 -0.14 -8.59 16 17 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 18 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 19 N -0.90 -24.51 13.05 55.50 0.72 -23.78 16 20 Si 0.93 21.19 29.55 -169.99 -5.02 16.17 16 21 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 24 C 0.04 0.68 4.63 -3.83 -0.02 0.66 16 25 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.61 7.93 -51.93 -0.41 0.20 16 31 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 32 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.06 0.73 7.93 -51.93 -0.41 0.32 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.07 1.42 6.00 -51.93 -0.31 1.11 16 37 H 0.07 1.02 8.06 -51.93 -0.42 0.60 16 38 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 39 H 0.09 1.46 8.06 -51.93 -0.42 1.04 16 40 H 0.39 9.52 7.90 -40.82 -0.32 9.19 16 41 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 42 H 0.07 1.18 8.12 -51.93 -0.42 0.76 16 43 H 0.09 2.12 5.36 -51.93 -0.28 1.84 16 LS Contribution 345.79 15.07 5.21 5.21 Total: -1.00 -31.61 345.79 -7.39 -39.00 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -7.14 Total: 10.42 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: 0.80 Total: 4.27 kcal Atomic # 7 Polarization: -47.41 SS G_CDS: -0.48 Total: -47.89 kcal Atomic # 8 Polarization: -26.41 SS G_CDS: -0.76 Total: -27.17 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.61 -7.39 -39.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179354113.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.070 kcal (2) G-P(sol) polarization free energy of solvation -31.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds