Wall clock time and date at job start Tue Mar 31 2020 03:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42897 * 114.00130 * 2 1 4 4 C 1.52995 * 109.47404 * 180.02562 * 3 2 1 5 5 O 1.42901 * 109.47211 * 65.00274 * 4 3 2 6 6 C 1.42901 * 114.00411 * 180.02562 * 5 4 3 7 7 H 1.08999 * 109.49837 * 329.91794 * 6 5 4 8 8 C 1.53119 * 109.50339 * 89.99408 * 6 5 4 9 9 C 1.53124 * 109.15796 * 177.63376 * 8 6 5 10 10 C 1.53037 * 109.28148 * 302.35024 * 9 8 6 11 11 N 1.46844 * 109.52152 * 59.17731 * 10 9 8 12 12 C 1.46906 * 110.99887 * 174.16043 * 11 10 9 13 13 C 1.50706 * 109.46929 * 66.04691 * 12 11 10 14 14 O 1.21290 * 119.99857 * 359.97438 * 13 12 11 15 15 N 1.34768 * 119.99753 * 179.97438 * 13 12 11 16 16 C 1.37101 * 120.00038 * 179.97438 * 15 13 12 17 17 H 1.08001 * 119.99491 * 0.02562 * 16 15 13 18 18 C 1.38950 * 120.00236 * 180.02562 * 16 15 13 19 19 N 1.31415 * 119.99936 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00013 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47337 * 59.99183 * 20 18 16 22 22 H 1.48496 * 109.46923 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47051 * 299.99409 * 20 18 16 24 24 C 1.46850 * 111.19991 * 298.25708 * 11 10 9 25 25 H 1.09000 * 109.46876 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46689 * 299.99662 * 1 2 3 27 27 H 1.08992 * 109.47082 * 59.99513 * 1 2 3 28 28 H 1.09007 * 109.47122 * 60.00411 * 3 2 1 29 29 H 1.08997 * 109.47193 * 300.00730 * 3 2 1 30 30 H 1.09002 * 109.47078 * 305.00306 * 4 3 2 31 31 H 1.09001 * 109.47426 * 185.00316 * 4 3 2 32 32 H 1.09001 * 109.51997 * 57.73565 * 8 6 5 33 33 H 1.08999 * 109.52624 * 297.54171 * 8 6 5 34 34 H 1.08997 * 109.50392 * 182.40446 * 9 8 6 35 35 H 1.09000 * 109.49712 * 62.29080 * 9 8 6 36 36 H 1.08995 * 109.46089 * 299.16330 * 10 9 8 37 37 H 1.08993 * 109.46053 * 179.19513 * 10 9 8 38 38 H 1.08998 * 109.47121 * 186.04358 * 12 11 10 39 39 H 1.09000 * 109.47141 * 306.04556 * 12 11 10 40 40 H 0.97005 * 120.00524 * 0.02562 * 15 13 12 41 41 H 0.96994 * 119.99987 * 179.97438 * 19 18 16 42 42 H 1.09005 * 109.46314 * 181.76064 * 24 11 10 43 43 H 1.08998 * 109.46244 * 301.72632 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 8 3.9649 0.5797 -1.2220 6 6 5.3811 0.4192 -1.3247 7 1 5.8786 1.2112 -0.7650 8 6 5.7842 -0.9424 -0.7518 9 6 7.2945 -1.1310 -0.9194 10 6 7.6571 -1.0126 -2.4015 11 7 7.2519 0.3071 -2.9019 12 6 7.7081 0.5089 -4.2837 13 6 6.9927 -0.4551 -5.1948 14 8 6.1829 -1.2339 -4.7378 15 7 7.2527 -0.4518 -6.5171 16 6 6.6022 -1.3291 -7.3459 17 1 5.8812 -2.0226 -6.9390 18 6 6.8707 -1.3261 -8.7092 19 7 7.7477 -0.4819 -9.2043 20 14 5.9839 -2.5210 -9.8384 21 1 4.5203 -2.2824 -9.7603 22 1 6.4446 -2.3165 -11.2352 23 1 6.2816 -3.9136 -9.4174 24 6 5.7991 0.4926 -2.7950 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 1.6887 1.8463 0.8901 29 1 1.6886 1.8464 -0.8899 30 1 3.8515 0.5682 0.8409 31 1 3.9785 2.1765 0.0890 32 1 5.2569 -1.7328 -1.2860 33 1 5.5273 -0.9827 0.3067 34 1 7.5811 -2.1163 -0.5522 35 1 7.8220 -0.3633 -0.3533 36 1 7.1399 -1.7892 -2.9650 37 1 8.7336 -1.1322 -2.5226 38 1 7.4897 1.5311 -4.5928 39 1 8.7824 0.3337 -4.3409 40 1 7.9006 0.1709 -6.8825 41 1 7.9354 -0.4800 -10.1559 42 1 5.5263 1.4663 -3.2020 43 1 5.2907 -0.2910 -3.3567 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179354113.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:01 Heat of formation + Delta-G solvation = -148.583296 kcal Electronic energy + Delta-G solvation = -23410.849545 eV Core-core repulsion = 19876.283228 eV Total energy + Delta-G solvation = -3534.566316 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.11383 -39.71656 -38.75272 -37.57132 -35.93013 -33.96951 -33.27736 -31.86854 -30.08661 -28.86404 -27.14848 -26.52088 -24.14963 -23.79666 -23.25745 -21.26709 -20.78632 -19.82315 -18.02897 -17.82579 -17.63078 -17.00097 -16.68860 -16.40924 -16.17608 -15.94002 -15.79482 -15.65255 -15.42673 -15.13429 -14.58132 -14.13331 -13.90295 -13.78381 -13.47620 -13.27897 -13.11117 -13.01564 -12.54440 -12.47892 -12.46304 -12.17665 -12.13248 -11.93690 -11.75816 -11.64823 -11.48403 -11.31604 -10.97469 -10.64142 -10.37625 -10.00978 -9.04175 -8.48014 -5.98048 1.35859 1.38325 1.49232 2.00139 2.27391 2.46820 2.87645 3.17491 3.24221 3.26019 3.84193 3.89983 4.06480 4.11903 4.21262 4.28300 4.33295 4.41019 4.45361 4.47186 4.53161 4.54623 4.58367 4.64808 4.66391 4.74775 4.84071 4.85393 4.94913 5.01305 5.08614 5.17923 5.23196 5.37508 5.46904 5.87606 5.99980 6.04960 6.22599 6.42309 6.57565 7.09947 7.53042 8.09160 8.67262 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.016686 B = 0.003736 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.697552 B = 7493.565566 C = 8580.820411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.418 6.418 3 C 0.059 3.941 4 C 0.056 3.944 5 O -0.404 6.404 6 C 0.106 3.894 7 H 0.085 0.915 8 C -0.135 4.135 9 C -0.100 4.100 10 C 0.036 3.964 11 N -0.495 5.495 12 C 0.050 3.950 13 C 0.405 3.595 14 O -0.622 6.622 15 N -0.569 5.569 16 C -0.336 4.336 17 H 0.075 0.925 18 C -0.010 4.010 19 N -0.918 5.918 20 Si 0.990 3.010 21 H -0.274 1.274 22 H -0.268 1.268 23 H -0.272 1.272 24 C 0.040 3.960 25 H 0.089 0.911 26 H 0.061 0.939 27 H 0.042 0.958 28 H 0.095 0.905 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.088 0.912 32 H 0.036 0.964 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.025 0.975 37 H 0.082 0.918 38 H 0.111 0.889 39 H 0.117 0.883 40 H 0.397 0.603 41 H 0.279 0.721 42 H 0.065 0.935 43 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.619 6.355 18.978 20.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.338 6.338 3 C -0.017 4.017 4 C -0.020 4.020 5 O -0.323 6.323 6 C 0.048 3.952 7 H 0.103 0.897 8 C -0.173 4.173 9 C -0.138 4.138 10 C -0.092 4.092 11 N -0.218 5.218 12 C -0.082 4.082 13 C 0.193 3.807 14 O -0.510 6.510 15 N -0.206 5.206 16 C -0.466 4.466 17 H 0.093 0.907 18 C -0.211 4.211 19 N -0.558 5.558 20 Si 0.814 3.186 21 H -0.200 1.200 22 H -0.192 1.192 23 H -0.198 1.198 24 C -0.088 4.088 25 H 0.107 0.893 26 H 0.079 0.921 27 H 0.061 0.939 28 H 0.113 0.887 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.106 0.894 32 H 0.055 0.945 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.107 0.893 36 H 0.044 0.956 37 H 0.101 0.899 38 H 0.129 0.871 39 H 0.135 0.865 40 H 0.231 0.769 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -4.880 6.022 19.244 20.746 hybrid contribution -0.645 -0.731 -1.627 1.897 sum -5.524 5.291 17.617 19.206 Atomic orbital electron populations 1.22896 0.79734 1.03522 1.00867 1.87935 1.21339 1.28896 1.95592 1.22744 0.92128 0.84903 1.01935 1.22810 0.93830 0.98399 0.86943 1.87960 1.22569 1.82349 1.39432 1.21929 0.80667 0.97257 0.95346 0.89736 1.22008 0.96998 0.97166 1.01149 1.21470 0.94619 1.03093 0.94597 1.22320 1.00500 0.89907 0.96475 1.62463 1.12421 1.29804 1.17114 1.22172 1.00765 0.98806 0.86451 1.22197 0.86617 0.88288 0.83634 1.90433 1.39901 1.45211 1.75422 1.42110 1.38311 1.33853 1.06308 1.19603 1.21868 1.15594 0.89514 0.90707 1.26014 0.97489 0.99333 0.98216 1.69658 1.33827 1.37253 1.15097 0.85032 0.78269 0.78131 0.77164 1.19950 1.19189 1.19764 1.22202 0.88792 1.01465 0.96368 0.89298 0.92063 0.93930 0.88739 0.92978 0.92088 0.89378 0.94515 0.90131 0.90050 0.89324 0.95649 0.89947 0.87127 0.86527 0.76929 0.91196 0.91629 0.93703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 113.37 1.25 1.71 16 2 O -0.42 -10.73 10.67 -144.34 -1.54 -12.27 16 3 C 0.06 1.18 6.32 71.98 0.45 1.64 16 4 C 0.06 1.22 6.13 71.98 0.44 1.66 16 5 O -0.40 -12.76 9.96 -144.34 -1.44 -14.20 16 6 C 0.11 3.15 2.77 30.64 0.08 3.23 16 7 H 0.08 2.08 7.79 -2.39 -0.02 2.06 16 8 C -0.14 -3.87 5.62 30.68 0.17 -3.70 16 9 C -0.10 -2.56 6.09 30.65 0.19 -2.37 16 10 C 0.04 1.18 5.09 86.33 0.44 1.62 16 11 N -0.49 -16.53 4.86 -900.93 -4.38 -20.90 16 12 C 0.05 1.75 5.86 85.56 0.50 2.25 16 13 C 0.41 19.41 7.20 87.66 0.63 20.04 16 14 O -0.62 -34.32 11.20 -3.06 -0.03 -34.35 16 15 N -0.57 -29.60 5.29 -306.99 -1.62 -31.22 16 16 C -0.34 -19.44 9.68 84.04 0.81 -18.63 16 17 H 0.07 4.64 7.16 -2.91 -0.02 4.62 16 18 C -0.01 -0.56 5.50 84.93 0.47 -0.10 16 19 N -0.92 -50.03 13.05 21.66 0.28 -49.75 16 20 Si 0.99 43.78 29.55 68.60 2.03 45.81 16 21 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 22 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 23 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 24 C 0.04 1.46 4.63 86.32 0.40 1.86 16 25 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 29 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.06 1.22 7.93 -2.39 -0.02 1.20 16 31 H 0.09 1.41 8.09 -2.39 -0.02 1.39 16 32 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.08 1.91 7.93 -2.39 -0.02 1.89 16 34 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.03 1.07 6.00 -2.39 -0.01 1.05 16 37 H 0.08 2.40 8.06 -2.39 -0.02 2.38 16 38 H 0.11 3.46 8.14 -2.39 -0.02 3.44 16 39 H 0.12 3.53 8.06 -2.39 -0.02 3.51 16 40 H 0.40 19.54 7.90 -92.70 -0.73 18.81 16 41 H 0.28 14.22 8.31 -92.71 -0.77 13.45 16 42 H 0.07 2.34 8.12 -2.38 -0.02 2.32 16 43 H 0.04 2.13 5.36 -2.39 -0.01 2.11 16 Total: -1.00 -71.66 345.79 -0.60 -72.26 By element: Atomic # 1 Polarization: 35.15 SS G_CDS: 0.26 Total: 35.41 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: 5.84 Total: 9.21 kcal Atomic # 7 Polarization: -96.15 SS G_CDS: -5.72 Total: -101.87 kcal Atomic # 8 Polarization: -57.81 SS G_CDS: -3.01 Total: -60.82 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -71.66 -0.60 -72.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179354113.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.322 kcal (2) G-P(sol) polarization free energy of solvation -71.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds