Wall clock time and date at job start Tue Mar 31 2020 03:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.32564 * 120.00218 * 2 1 4 4 C 1.47811 * 120.00107 * 7.85670 * 3 2 1 5 5 C 1.39534 * 120.14140 * 211.59398 * 4 3 2 6 6 C 1.37977 * 119.85630 * 179.71871 * 5 4 3 7 7 C 1.38344 * 120.13730 * 0.53223 * 6 5 4 8 8 C 1.38344 * 120.29009 * 359.76069 * 7 6 5 9 9 C 1.37970 * 120.14307 * 359.96068 * 8 7 6 10 10 C 1.50697 * 119.99561 * 179.97438 * 2 1 3 11 11 N 1.46896 * 109.47280 * 274.99979 * 10 2 1 12 12 C 1.46903 * 111.00278 * 294.30195 * 11 10 2 13 13 C 1.53236 * 109.33968 * 172.74382 * 12 11 10 14 14 N 1.47080 * 108.52124 * 53.83769 * 13 12 11 15 15 C 1.36937 * 120.88521 * 128.83775 * 14 13 12 16 16 H 1.08003 * 120.00031 * 209.02085 * 15 14 13 17 17 C 1.38814 * 119.99946 * 29.01662 * 15 14 13 18 18 N 1.31616 * 119.99730 * 13.66988 * 17 15 14 19 19 Si 1.86800 * 119.99653 * 193.66844 * 17 15 14 20 20 H 1.48494 * 109.47039 * 90.00232 * 19 17 15 21 21 H 1.48506 * 109.46798 * 209.99953 * 19 17 15 22 22 H 1.48495 * 109.47314 * 329.99914 * 19 17 15 23 23 C 1.47083 * 118.23244 * 308.80662 * 14 13 12 24 24 C 1.46905 * 111.00172 * 170.00070 * 11 10 2 25 25 H 1.09005 * 109.47252 * 269.39466 * 1 2 3 26 26 H 1.08997 * 109.47361 * 149.39140 * 1 2 3 27 27 H 1.09000 * 109.46974 * 29.39157 * 1 2 3 28 28 H 1.07999 * 120.00101 * 187.85389 * 3 2 1 29 29 H 1.08004 * 120.07068 * 359.97025 * 5 4 3 30 30 H 1.07997 * 119.93076 * 180.27316 * 6 5 4 31 31 H 1.08004 * 119.85409 * 179.74360 * 7 6 5 32 32 H 1.07997 * 119.92608 * 179.97438 * 8 7 6 33 33 H 1.07996 * 120.07618 * 180.02562 * 9 8 7 34 34 H 1.09000 * 109.47481 * 34.99994 * 10 2 1 35 35 H 1.08999 * 109.46928 * 155.00263 * 10 2 1 36 36 H 1.08996 * 109.49376 * 292.70583 * 12 11 10 37 37 H 1.09001 * 109.48859 * 52.78572 * 12 11 10 38 38 H 1.08996 * 109.63394 * 294.12205 * 13 12 11 39 39 H 1.09005 * 109.62757 * 173.53941 * 13 12 11 40 40 H 0.97007 * 119.99450 * 180.02562 * 18 17 15 41 41 H 1.08998 * 109.63033 * 291.47664 * 23 14 13 42 42 H 1.09003 * 109.78429 * 170.98845 * 23 14 13 43 43 H 1.08995 * 109.49329 * 307.21461 * 24 11 10 44 44 H 1.09001 * 109.49053 * 67.29210 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1699 1.1480 0.0000 4 6 1.4413 2.4221 0.1750 5 6 1.9071 3.5856 -0.4386 6 6 1.2192 4.7705 -0.2760 7 6 0.0761 4.8089 0.5023 8 6 -0.3876 3.6602 1.1183 9 6 0.2879 2.4677 0.9590 10 6 2.2604 -1.3051 0.0006 11 7 2.4007 -1.7890 1.3805 12 6 3.2491 -0.8871 2.1709 13 6 3.2234 -1.3236 3.6396 14 7 3.5921 -2.7456 3.7109 15 6 4.5746 -3.1753 4.5625 16 1 5.1598 -4.0487 4.3151 17 6 4.8185 -2.4882 5.7438 18 7 3.9500 -1.6007 6.1801 19 14 6.3792 -2.8234 6.7139 20 1 7.4551 -1.9103 6.2515 21 1 6.1227 -2.5945 8.1586 22 1 6.8004 -4.2316 6.5030 23 6 2.8768 -3.6942 2.8436 24 6 2.9161 -3.1644 1.4063 25 1 -0.3634 -0.0109 1.0276 26 1 -0.3634 -0.8844 -0.5232 27 1 -0.3633 0.8954 -0.5044 28 1 3.2423 1.1524 -0.1278 29 1 2.8019 3.5578 -1.0427 30 1 1.5761 5.6708 -0.7540 31 1 -0.4566 5.7398 0.6298 32 1 -1.2803 3.6969 1.7249 33 1 -0.0752 1.5716 1.4400 34 1 1.7131 -2.0410 -0.5885 35 1 3.2487 -1.1543 -0.4338 36 1 4.2720 -0.9291 1.7969 37 1 2.8725 0.1324 2.0878 38 1 2.2216 -1.1842 4.0456 39 1 3.9385 -0.7310 4.2103 40 1 4.1207 -1.1203 7.0054 41 1 1.8416 -3.7826 3.1731 42 1 3.3597 -4.6704 2.8873 43 1 2.2981 -3.7964 0.7687 44 1 3.9437 -3.1746 1.0428 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179357766.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:43 Heat of formation + Delta-G solvation = 74.783141 kcal Electronic energy + Delta-G solvation = -22532.664989 eV Core-core repulsion = 19450.926582 eV Total energy + Delta-G solvation = -3081.738407 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 286.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.47820 -38.20367 -35.84604 -33.82033 -31.41419 -31.11263 -30.14672 -29.86368 -27.52287 -26.88087 -24.59207 -22.62574 -22.45999 -22.34148 -21.39171 -19.03674 -18.40410 -16.76145 -16.50149 -15.55980 -15.28552 -15.13888 -14.53933 -14.40792 -14.21524 -13.70058 -13.58345 -13.40837 -13.25065 -13.05143 -12.83774 -12.56873 -12.27445 -11.81495 -11.74847 -11.43471 -11.28509 -11.04218 -10.95886 -10.74788 -10.68540 -10.39317 -10.25540 -10.01679 -9.79313 -9.57367 -9.53730 -8.90937 -8.48368 -8.06265 -7.73237 -6.59745 -5.74771 -3.19434 1.01528 1.41434 2.43889 3.39155 3.45602 3.46998 3.87805 4.49723 4.56286 4.78885 4.87608 4.94779 5.01021 5.09066 5.23893 5.42117 5.43594 5.49201 5.55326 5.67871 5.72571 5.76653 5.81013 5.95560 5.97677 5.99941 6.06755 6.12620 6.18644 6.32051 6.37683 6.39422 6.47815 6.50553 6.58961 6.72801 6.76003 6.93112 6.97483 7.02679 7.29880 7.64355 7.70570 7.75519 7.85761 8.48429 9.25131 9.87504 10.47382 11.33753 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.019052 B = 0.003940 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.291334 B = 7104.211706 C = 7974.593151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.082 4.082 3 C -0.139 4.139 4 C -0.042 4.042 5 C -0.114 4.114 6 C -0.125 4.125 7 C -0.127 4.127 8 C -0.122 4.122 9 C -0.114 4.114 10 C 0.087 3.913 11 N -0.526 5.526 12 C 0.032 3.968 13 C 0.181 3.819 14 N -0.596 5.596 15 C -0.253 4.253 16 H 0.064 0.936 17 C 0.003 3.997 18 N -0.904 5.904 19 Si 0.903 3.097 20 H -0.288 1.288 21 H -0.291 1.291 22 H -0.279 1.279 23 C 0.150 3.850 24 C 0.045 3.955 25 H 0.076 0.924 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.116 0.884 29 H 0.120 0.880 30 H 0.118 0.882 31 H 0.117 0.883 32 H 0.121 0.879 33 H 0.136 0.864 34 H 0.074 0.926 35 H 0.032 0.968 36 H 0.021 0.979 37 H 0.066 0.934 38 H 0.025 0.975 39 H 0.086 0.914 40 H 0.254 0.746 41 H 0.025 0.975 42 H 0.055 0.945 43 H 0.061 0.939 44 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.366 8.635 -14.643 18.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.083 4.083 3 C -0.158 4.158 4 C -0.042 4.042 5 C -0.133 4.133 6 C -0.143 4.143 7 C -0.145 4.145 8 C -0.140 4.140 9 C -0.132 4.132 10 C -0.041 4.041 11 N -0.250 5.250 12 C -0.097 4.097 13 C 0.055 3.945 14 N -0.319 5.319 15 C -0.383 4.383 16 H 0.082 0.918 17 C -0.195 4.195 18 N -0.548 5.548 19 Si 0.733 3.267 20 H -0.215 1.215 21 H -0.217 1.217 22 H -0.205 1.205 23 C 0.023 3.977 24 C -0.084 4.084 25 H 0.094 0.906 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.134 0.866 29 H 0.138 0.862 30 H 0.136 0.864 31 H 0.135 0.865 32 H 0.139 0.861 33 H 0.153 0.847 34 H 0.092 0.908 35 H 0.050 0.950 36 H 0.040 0.960 37 H 0.084 0.916 38 H 0.043 0.957 39 H 0.104 0.896 40 H 0.064 0.936 41 H 0.043 0.957 42 H 0.073 0.927 43 H 0.079 0.921 44 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -7.810 8.687 -14.249 18.426 hybrid contribution 1.707 -0.016 0.185 1.717 sum -6.104 8.671 -14.064 17.614 Atomic orbital electron populations 1.21103 0.92207 1.01829 1.02163 1.21969 0.95896 0.94000 0.96431 1.21447 0.98754 0.90786 1.04807 1.19035 0.94861 0.93335 0.96959 1.21269 0.99932 0.92314 0.99738 1.21034 0.95977 0.97714 0.99531 1.21160 0.96942 0.98224 0.98201 1.21113 1.00229 0.92786 0.99901 1.21782 0.94888 0.98668 0.97847 1.21096 0.97482 0.93888 0.91638 1.61950 1.51354 1.02609 1.09121 1.22974 0.93157 0.95644 0.97906 1.20826 0.99343 0.85308 0.89002 1.44103 1.41017 1.01851 1.44923 1.19196 1.08673 1.12506 0.97907 0.91786 1.25094 0.98247 1.00028 0.96171 1.70006 1.33900 1.28717 1.22194 0.86277 0.83200 0.77987 0.79214 1.21500 1.21686 1.20461 1.20964 0.95688 0.92921 0.88148 1.22638 0.96835 0.88922 1.00040 0.90564 0.92169 0.91596 0.86628 0.86213 0.86374 0.86481 0.86131 0.84653 0.90796 0.94959 0.96046 0.91577 0.95673 0.89598 0.93628 0.95721 0.92674 0.92070 0.95519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.38 8.17 36.01 0.29 -1.09 16 2 C -0.08 -1.11 4.90 -101.26 -0.50 -1.60 16 3 C -0.14 -1.86 7.85 -37.58 -0.30 -2.15 16 4 C -0.04 -0.54 5.25 -105.01 -0.55 -1.09 16 5 C -0.11 -1.33 9.79 -39.19 -0.38 -1.71 16 6 C -0.12 -1.31 10.03 -39.64 -0.40 -1.70 16 7 C -0.13 -1.32 10.04 -39.50 -0.40 -1.72 16 8 C -0.12 -1.36 10.03 -39.64 -0.40 -1.76 16 9 C -0.11 -1.43 7.64 -39.19 -0.30 -1.73 16 10 C 0.09 1.26 5.15 -4.98 -0.03 1.23 16 11 N -0.53 -9.46 4.62 -235.77 -1.09 -10.55 16 12 C 0.03 0.65 5.38 -3.70 -0.02 0.63 16 13 C 0.18 4.50 5.38 -3.60 -0.02 4.48 16 14 N -0.60 -15.42 3.03 -172.01 -0.52 -15.94 16 15 C -0.25 -7.09 9.63 -15.06 -0.14 -7.24 16 16 H 0.06 1.76 7.87 -52.48 -0.41 1.34 16 17 C 0.00 0.09 5.00 -17.43 -0.09 0.00 16 18 N -0.90 -26.65 11.12 55.49 0.62 -26.04 16 19 Si 0.90 21.97 29.58 -169.99 -5.03 16.94 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 23 C 0.15 3.24 6.69 -3.60 -0.02 3.22 16 24 C 0.04 0.82 5.62 -3.70 -0.02 0.80 16 25 H 0.08 0.95 6.63 -51.93 -0.34 0.60 16 26 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 27 H 0.07 0.73 6.16 -51.93 -0.32 0.41 16 28 H 0.12 1.53 7.99 -52.49 -0.42 1.11 16 29 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 30 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 31 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 32 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 33 H 0.14 1.69 5.06 -52.49 -0.27 1.43 16 34 H 0.07 0.97 7.93 -51.93 -0.41 0.55 16 35 H 0.03 0.47 7.96 -51.93 -0.41 0.06 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 1.26 5.99 -51.93 -0.31 0.95 16 38 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.09 2.37 6.20 -51.93 -0.32 2.04 16 40 H 0.25 7.22 8.31 -40.82 -0.34 6.89 16 41 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.05 1.14 7.96 -51.93 -0.41 0.73 16 43 H 0.06 0.94 7.99 -51.93 -0.41 0.53 16 44 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 345.16 15.07 5.20 5.20 Total: -1.00 -30.39 345.16 -11.07 -41.46 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -6.99 Total: 0.37 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: -3.27 Total: -11.44 kcal Atomic # 7 Polarization: -51.53 SS G_CDS: -0.99 Total: -52.53 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.39 -11.07 -41.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179357766.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.239 kcal (2) G-P(sol) polarization free energy of solvation -30.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds