Wall clock time and date at job start Tue Mar 31 2020 03:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.32564 * 120.00218 * 2 1 4 4 C 1.47811 * 120.00107 * 7.85670 * 3 2 1 5 5 C 1.39534 * 120.14140 * 211.59398 * 4 3 2 6 6 C 1.37977 * 119.85630 * 179.71871 * 5 4 3 7 7 C 1.38344 * 120.13730 * 0.53223 * 6 5 4 8 8 C 1.38344 * 120.29009 * 359.76069 * 7 6 5 9 9 C 1.37970 * 120.14307 * 359.96068 * 8 7 6 10 10 C 1.50697 * 119.99561 * 179.97438 * 2 1 3 11 11 N 1.46896 * 109.47280 * 274.99979 * 10 2 1 12 12 C 1.46903 * 111.00278 * 294.30195 * 11 10 2 13 13 C 1.53236 * 109.33968 * 172.74382 * 12 11 10 14 14 N 1.47080 * 108.52124 * 53.83769 * 13 12 11 15 15 C 1.36937 * 120.88521 * 128.83775 * 14 13 12 16 16 H 1.08003 * 120.00031 * 209.02085 * 15 14 13 17 17 C 1.38814 * 119.99946 * 29.01662 * 15 14 13 18 18 N 1.31616 * 119.99730 * 13.66988 * 17 15 14 19 19 Si 1.86800 * 119.99653 * 193.66844 * 17 15 14 20 20 H 1.48494 * 109.47039 * 90.00232 * 19 17 15 21 21 H 1.48506 * 109.46798 * 209.99953 * 19 17 15 22 22 H 1.48495 * 109.47314 * 329.99914 * 19 17 15 23 23 C 1.47083 * 118.23244 * 308.80662 * 14 13 12 24 24 C 1.46905 * 111.00172 * 170.00070 * 11 10 2 25 25 H 1.09005 * 109.47252 * 269.39466 * 1 2 3 26 26 H 1.08997 * 109.47361 * 149.39140 * 1 2 3 27 27 H 1.09000 * 109.46974 * 29.39157 * 1 2 3 28 28 H 1.07999 * 120.00101 * 187.85389 * 3 2 1 29 29 H 1.08004 * 120.07068 * 359.97025 * 5 4 3 30 30 H 1.07997 * 119.93076 * 180.27316 * 6 5 4 31 31 H 1.08004 * 119.85409 * 179.74360 * 7 6 5 32 32 H 1.07997 * 119.92608 * 179.97438 * 8 7 6 33 33 H 1.07996 * 120.07618 * 180.02562 * 9 8 7 34 34 H 1.09000 * 109.47481 * 34.99994 * 10 2 1 35 35 H 1.08999 * 109.46928 * 155.00263 * 10 2 1 36 36 H 1.08996 * 109.49376 * 292.70583 * 12 11 10 37 37 H 1.09001 * 109.48859 * 52.78572 * 12 11 10 38 38 H 1.08996 * 109.63394 * 294.12205 * 13 12 11 39 39 H 1.09005 * 109.62757 * 173.53941 * 13 12 11 40 40 H 0.97007 * 119.99450 * 180.02562 * 18 17 15 41 41 H 1.08998 * 109.63033 * 291.47664 * 23 14 13 42 42 H 1.09003 * 109.78429 * 170.98845 * 23 14 13 43 43 H 1.08995 * 109.49329 * 307.21461 * 24 11 10 44 44 H 1.09001 * 109.49053 * 67.29210 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1699 1.1480 0.0000 4 6 1.4413 2.4221 0.1750 5 6 1.9071 3.5856 -0.4386 6 6 1.2192 4.7705 -0.2760 7 6 0.0761 4.8089 0.5023 8 6 -0.3876 3.6602 1.1183 9 6 0.2879 2.4677 0.9590 10 6 2.2604 -1.3051 0.0006 11 7 2.4007 -1.7890 1.3805 12 6 3.2491 -0.8871 2.1709 13 6 3.2234 -1.3236 3.6396 14 7 3.5921 -2.7456 3.7109 15 6 4.5746 -3.1753 4.5625 16 1 5.1598 -4.0487 4.3151 17 6 4.8185 -2.4882 5.7438 18 7 3.9500 -1.6007 6.1801 19 14 6.3792 -2.8234 6.7139 20 1 7.4551 -1.9103 6.2515 21 1 6.1227 -2.5945 8.1586 22 1 6.8004 -4.2316 6.5030 23 6 2.8768 -3.6942 2.8436 24 6 2.9161 -3.1644 1.4063 25 1 -0.3634 -0.0109 1.0276 26 1 -0.3634 -0.8844 -0.5232 27 1 -0.3633 0.8954 -0.5044 28 1 3.2423 1.1524 -0.1278 29 1 2.8019 3.5578 -1.0427 30 1 1.5761 5.6708 -0.7540 31 1 -0.4566 5.7398 0.6298 32 1 -1.2803 3.6969 1.7249 33 1 -0.0752 1.5716 1.4400 34 1 1.7131 -2.0410 -0.5885 35 1 3.2487 -1.1543 -0.4338 36 1 4.2720 -0.9291 1.7969 37 1 2.8725 0.1324 2.0878 38 1 2.2216 -1.1842 4.0456 39 1 3.9385 -0.7310 4.2103 40 1 4.1207 -1.1203 7.0054 41 1 1.8416 -3.7826 3.1731 42 1 3.3597 -4.6704 2.8873 43 1 2.2981 -3.7964 0.7687 44 1 3.9437 -3.1746 1.0428 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179357766.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:43 Heat of formation + Delta-G solvation = 58.481032 kcal Electronic energy + Delta-G solvation = -22533.371901 eV Core-core repulsion = 19450.926582 eV Total energy + Delta-G solvation = -3082.445319 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 286.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.45523 -39.63490 -37.20198 -35.41019 -33.19377 -32.00119 -31.64650 -31.25724 -28.88969 -28.09659 -26.22205 -24.25549 -24.11006 -23.23292 -22.46902 -20.81382 -19.42240 -18.71693 -17.38396 -17.05096 -16.50129 -16.28904 -16.21016 -15.78175 -15.41644 -15.26928 -14.98290 -14.88841 -14.50801 -14.44903 -14.22076 -13.59413 -13.42687 -13.20227 -13.00241 -12.86323 -12.67007 -12.63589 -12.45321 -12.25051 -12.04050 -11.91100 -11.84583 -11.69832 -11.58438 -11.33304 -10.60957 -10.54641 -9.76721 -9.29874 -8.94534 -8.65494 -7.88089 -5.36817 0.09475 0.55601 1.44671 1.45597 1.46821 1.55921 2.49462 2.99066 3.14655 3.28427 3.68794 3.76240 3.93747 4.08009 4.15253 4.21631 4.31128 4.33984 4.35182 4.49120 4.55274 4.61444 4.67397 4.69787 4.74192 4.77178 4.85226 4.89068 4.90764 5.03762 5.10843 5.15786 5.19411 5.25426 5.35940 5.48957 5.57521 5.60026 5.66019 5.66365 5.76296 5.95187 6.16279 6.20017 6.26816 6.37832 7.12652 7.82451 8.37993 9.18488 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.019052 B = 0.003940 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.291334 B = 7104.211706 C = 7974.593151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.094 4.094 3 C -0.138 4.138 4 C -0.063 4.063 5 C -0.124 4.124 6 C -0.128 4.128 7 C -0.128 4.128 8 C -0.132 4.132 9 C -0.129 4.129 10 C 0.090 3.910 11 N -0.533 5.533 12 C 0.054 3.946 13 C 0.191 3.809 14 N -0.615 5.615 15 C -0.267 4.267 16 H 0.068 0.932 17 C -0.050 4.050 18 N -0.937 5.937 19 Si 0.970 3.030 20 H -0.285 1.285 21 H -0.293 1.293 22 H -0.267 1.267 23 C 0.144 3.856 24 C 0.055 3.945 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.113 0.887 29 H 0.131 0.869 30 H 0.143 0.857 31 H 0.143 0.857 32 H 0.137 0.863 33 H 0.129 0.871 34 H 0.097 0.903 35 H 0.035 0.965 36 H 0.013 0.987 37 H 0.075 0.925 38 H -0.004 1.004 39 H 0.052 0.948 40 H 0.250 0.750 41 H 0.016 0.984 42 H 0.062 0.938 43 H 0.099 0.901 44 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.462 9.030 -16.339 20.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.095 4.095 3 C -0.158 4.158 4 C -0.063 4.063 5 C -0.142 4.142 6 C -0.146 4.146 7 C -0.146 4.146 8 C -0.149 4.149 9 C -0.147 4.147 10 C -0.036 4.036 11 N -0.258 5.258 12 C -0.075 4.075 13 C 0.065 3.935 14 N -0.339 5.339 15 C -0.397 4.397 16 H 0.085 0.915 17 C -0.245 4.245 18 N -0.583 5.583 19 Si 0.798 3.202 20 H -0.212 1.212 21 H -0.220 1.220 22 H -0.191 1.191 23 C 0.019 3.981 24 C -0.074 4.074 25 H 0.085 0.915 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.131 0.869 29 H 0.149 0.851 30 H 0.161 0.839 31 H 0.161 0.839 32 H 0.155 0.845 33 H 0.147 0.853 34 H 0.115 0.885 35 H 0.053 0.947 36 H 0.031 0.969 37 H 0.093 0.907 38 H 0.014 0.986 39 H 0.070 0.930 40 H 0.059 0.941 41 H 0.034 0.966 42 H 0.080 0.920 43 H 0.117 0.883 44 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -7.915 9.062 -15.984 20.007 hybrid contribution 1.675 -0.098 0.682 1.812 sum -6.240 8.964 -15.302 18.800 Atomic orbital electron populations 1.21043 0.91143 1.02637 1.01773 1.22018 0.96667 0.93503 0.97271 1.21559 0.98727 0.91357 1.04117 1.19133 0.95442 0.93629 0.98124 1.21513 1.00529 0.92389 0.99790 1.21385 0.95750 0.98210 0.99212 1.21528 0.96861 0.98933 0.97246 1.21386 1.00756 0.92640 1.00159 1.21847 0.95303 0.99208 0.98338 1.21137 0.98162 0.94977 0.89369 1.61867 1.50348 1.02215 1.11329 1.22551 0.93292 0.96500 0.95178 1.20535 0.96427 0.84994 0.91553 1.44386 1.41337 1.02830 1.45364 1.19554 1.09318 1.12522 0.98315 0.91474 1.25886 1.01207 1.00111 0.97310 1.70178 1.35724 1.29853 1.22501 0.85226 0.79367 0.78315 0.77288 1.21211 1.21978 1.19149 1.21132 0.94628 0.92760 0.89606 1.22502 0.97574 0.89444 0.97865 0.91506 0.91029 0.91096 0.86931 0.85067 0.83876 0.83927 0.84526 0.85309 0.88510 0.94683 0.96859 0.90683 0.98625 0.93006 0.94079 0.96607 0.92002 0.88323 0.95878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.47 8.17 71.24 0.58 -1.89 16 2 C -0.09 -2.42 4.90 -17.60 -0.09 -2.50 16 3 C -0.14 -3.62 7.85 23.65 0.19 -3.43 16 4 C -0.06 -1.59 5.25 -20.12 -0.11 -1.70 16 5 C -0.12 -2.72 9.79 22.52 0.22 -2.50 16 6 C -0.13 -2.40 10.03 22.23 0.22 -2.18 16 7 C -0.13 -2.37 10.04 22.32 0.22 -2.14 16 8 C -0.13 -2.76 10.03 22.23 0.22 -2.54 16 9 C -0.13 -3.18 7.64 22.52 0.17 -3.01 16 10 C 0.09 2.44 5.15 85.56 0.44 2.88 16 11 N -0.53 -18.56 4.62 -899.83 -4.16 -22.71 16 12 C 0.05 2.21 5.38 86.38 0.46 2.67 16 13 C 0.19 9.83 5.38 86.35 0.46 10.30 16 14 N -0.61 -32.43 3.03 -698.12 -2.12 -34.54 16 15 C -0.27 -15.16 9.63 84.03 0.81 -14.35 16 16 H 0.07 3.69 7.87 -2.91 -0.02 3.67 16 17 C -0.05 -2.85 5.00 84.86 0.42 -2.43 16 18 N -0.94 -57.03 11.12 21.65 0.24 -56.79 16 19 Si 0.97 45.73 29.58 68.60 2.03 47.76 16 20 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 21 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 22 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 23 C 0.14 6.20 6.69 86.35 0.58 6.78 16 24 C 0.06 1.90 5.62 86.38 0.49 2.39 16 25 H 0.07 1.63 6.63 -2.38 -0.02 1.62 16 26 H 0.07 1.41 8.09 -2.39 -0.02 1.39 16 27 H 0.07 1.51 6.16 -2.39 -0.01 1.50 16 28 H 0.11 2.93 7.99 -2.91 -0.02 2.91 16 29 H 0.13 2.45 8.06 -2.91 -0.02 2.43 16 30 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 31 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 32 H 0.14 2.31 8.06 -2.91 -0.02 2.28 16 33 H 0.13 3.25 5.06 -2.91 -0.01 3.24 16 34 H 0.10 2.20 7.93 -2.39 -0.02 2.18 16 35 H 0.03 0.95 7.96 -2.39 -0.02 0.93 16 36 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.07 2.90 5.99 -2.39 -0.01 2.89 16 38 H 0.00 -0.25 8.14 -2.39 -0.02 -0.26 16 39 H 0.05 2.99 6.20 -2.38 -0.01 2.98 16 40 H 0.25 14.71 8.31 -92.70 -0.77 13.94 16 41 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.06 2.52 7.96 -2.39 -0.02 2.51 16 43 H 0.10 2.70 7.99 -2.39 -0.02 2.68 16 44 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -66.48 345.16 2.26 -64.22 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: 0.96 Total: 15.72 kcal Atomic # 6 Polarization: -18.95 SS G_CDS: 5.30 Total: -13.65 kcal Atomic # 7 Polarization: -108.01 SS G_CDS: -6.03 Total: -114.04 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -66.48 2.26 -64.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179357766.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.697 kcal (2) G-P(sol) polarization free energy of solvation -66.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds