Wall clock time and date at job start Tue Mar 31 2020 02:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34230 * 116.99829 * 2 1 4 4 O 1.20826 * 119.99774 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00034 * 179.97438 * 3 2 1 6 6 N 1.46504 * 109.47153 * 179.97438 * 5 3 2 7 7 C 1.36931 * 120.00294 * 270.00492 * 6 5 3 8 8 H 1.08005 * 120.00297 * 187.79078 * 7 6 5 9 9 C 1.38815 * 119.99990 * 7.78575 * 7 6 5 10 10 N 1.31623 * 119.99864 * 25.58741 * 9 7 6 11 11 Si 1.86803 * 120.00029 * 205.58701 * 9 7 6 12 12 H 1.48497 * 109.47138 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.46842 * 120.00445 * 11 9 7 14 14 H 1.48507 * 109.46810 * 239.99890 * 11 9 7 15 15 C 1.46496 * 119.99771 * 90.00118 * 6 5 3 16 16 C 1.53001 * 109.47363 * 271.84889 * 15 6 5 17 17 N 1.46903 * 109.46943 * 180.02562 * 16 15 6 18 18 C 1.47011 * 111.00176 * 293.94884 * 17 16 15 19 19 C 1.53096 * 109.25997 * 182.39579 * 18 17 16 20 20 O 1.43021 * 109.25769 * 303.15443 * 19 18 17 21 21 C 1.43014 * 113.74091 * 58.66667 * 20 19 18 22 22 H 1.09005 * 109.50270 * 61.26654 * 21 20 19 23 23 C 1.52998 * 109.50926 * 181.35383 * 21 20 19 24 24 C 1.47017 * 111.00259 * 57.59028 * 17 16 15 25 25 H 1.09002 * 109.46644 * 60.00185 * 1 2 3 26 26 H 1.09003 * 109.46976 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47221 * 300.00264 * 1 2 3 28 28 H 1.08994 * 109.46717 * 60.00491 * 5 3 2 29 29 H 1.08996 * 109.47126 * 299.99964 * 5 3 2 30 30 H 0.96994 * 119.99824 * 179.97438 * 10 9 7 31 31 H 1.09004 * 109.47548 * 151.84352 * 15 6 5 32 32 H 1.09007 * 109.47490 * 31.85006 * 15 6 5 33 33 H 1.09001 * 109.47215 * 60.00218 * 16 15 6 34 34 H 1.08994 * 109.47089 * 299.99864 * 16 15 6 35 35 H 1.09005 * 109.50493 * 62.46162 * 18 17 16 36 36 H 1.08997 * 109.50608 * 302.33266 * 18 17 16 37 37 H 1.08994 * 109.50595 * 183.22160 * 19 18 17 38 38 H 1.08995 * 109.50741 * 63.08814 * 19 18 17 39 39 H 1.08991 * 109.47438 * 59.91364 * 23 21 20 40 40 H 1.09006 * 109.47172 * 179.97438 * 23 21 20 41 41 H 1.09006 * 109.46736 * 299.91242 * 23 21 20 42 42 H 1.09004 * 109.50541 * 57.66871 * 24 17 16 43 43 H 1.08998 * 109.50174 * 297.53807 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9817 2.6799 -0.0002 7 6 4.1762 3.3358 -1.1863 8 1 4.6019 4.3284 -1.1911 9 6 3.8264 2.7248 -2.3827 10 7 2.8909 1.7990 -2.4000 11 14 4.6833 3.2166 -3.9681 12 1 5.6889 4.2708 -3.6808 13 1 5.3617 2.0318 -4.5521 14 1 3.6805 3.7377 -4.9316 15 6 4.1888 3.3831 1.2682 16 6 2.8669 3.9980 1.7323 17 7 3.0749 4.7036 3.0038 18 6 3.4189 3.7618 4.0790 19 6 3.5676 4.5300 5.3948 20 8 4.5543 5.5530 5.2349 21 6 4.2508 6.4883 4.1964 22 1 3.3160 6.9988 4.4282 23 6 5.3801 7.5148 4.0873 24 6 4.1089 5.7399 2.8684 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 3.9563 0.7807 -0.8892 29 1 3.9557 0.7810 0.8908 30 1 2.6463 1.3725 -3.2361 31 1 4.9279 4.1722 1.1297 32 1 4.5458 2.6790 2.0200 33 1 2.1279 3.2088 1.8709 34 1 2.5100 4.7020 0.9806 35 1 4.3587 3.2640 3.8398 36 1 2.6277 3.0187 4.1787 37 1 3.8785 3.8446 6.1832 38 1 2.6131 4.9835 5.6615 39 1 6.3144 7.0038 3.8555 40 1 5.1483 8.2271 3.2953 41 1 5.4813 8.0456 5.0340 42 1 3.8213 6.4407 2.0846 43 1 5.0596 5.2737 2.6100 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191530711.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:26:28 Heat of formation + Delta-G solvation = -91.734128 kcal Electronic energy + Delta-G solvation = -24470.658583 eV Core-core repulsion = 20938.557431 eV Total energy + Delta-G solvation = -3532.101151 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.63065 -38.93686 -36.64082 -35.27448 -34.38364 -32.72264 -31.48324 -29.30572 -28.13893 -27.20272 -26.01870 -25.27336 -23.34281 -22.19702 -21.25907 -19.92093 -19.36936 -17.00679 -16.33115 -16.28989 -15.99813 -15.58037 -15.16999 -15.04475 -14.81413 -14.74433 -14.18019 -13.80405 -13.50704 -13.12210 -12.63809 -12.49760 -12.37476 -12.29556 -12.06179 -11.79603 -11.73396 -11.36954 -11.21112 -11.09950 -10.96028 -10.86888 -10.58977 -10.39050 -10.18459 -10.00035 -9.84677 -9.56070 -9.47510 -9.17975 -8.60668 -8.08050 -7.05182 -5.97982 -3.23049 3.32858 3.41440 3.43685 3.80003 3.85772 4.03776 4.16499 4.46120 4.91295 5.11185 5.15252 5.22944 5.25106 5.32457 5.33503 5.52649 5.60711 5.66831 5.75173 5.79263 5.81070 5.85578 5.97208 6.02559 6.03455 6.08874 6.16218 6.20210 6.25298 6.33177 6.54735 6.63183 7.02714 7.08109 7.23506 7.36174 7.40369 7.65266 7.77472 8.11156 8.96990 9.37512 9.67275 10.07598 11.13681 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.015796 B = 0.005506 C = 0.004311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.148301 B = 5083.720297 C = 6493.436408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.383 6.383 3 C 0.465 3.535 4 O -0.504 6.504 5 C 0.187 3.813 6 N -0.566 5.566 7 C -0.251 4.251 8 H 0.081 0.919 9 C 0.000 4.000 10 N -0.902 5.902 11 Si 0.907 3.093 12 H -0.278 1.278 13 H -0.288 1.288 14 H -0.292 1.292 15 C 0.116 3.884 16 C 0.038 3.962 17 N -0.540 5.540 18 C 0.015 3.985 19 C 0.067 3.933 20 O -0.387 6.387 21 C 0.089 3.911 22 H 0.062 0.938 23 C -0.144 4.144 24 C 0.022 3.978 25 H 0.052 0.948 26 H 0.079 0.921 27 H 0.044 0.956 28 H 0.115 0.885 29 H 0.050 0.950 30 H 0.257 0.743 31 H 0.054 0.946 32 H 0.038 0.962 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.045 0.955 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.054 0.946 39 H 0.062 0.938 40 H 0.072 0.928 41 H 0.061 0.939 42 H 0.083 0.917 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.283 2.157 11.842 12.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.301 6.301 3 C 0.305 3.695 4 O -0.389 6.389 5 C 0.058 3.942 6 N -0.286 5.286 7 C -0.379 4.379 8 H 0.099 0.901 9 C -0.197 4.197 10 N -0.548 5.548 11 Si 0.736 3.264 12 H -0.203 1.203 13 H -0.214 1.214 14 H -0.219 1.219 15 C -0.012 4.012 16 C -0.091 4.091 17 N -0.264 5.264 18 C -0.114 4.114 19 C -0.010 4.010 20 O -0.306 6.306 21 C 0.031 3.969 22 H 0.080 0.920 23 C -0.201 4.201 24 C -0.107 4.107 25 H 0.071 0.929 26 H 0.098 0.902 27 H 0.063 0.937 28 H 0.133 0.867 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.056 0.944 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.063 0.937 36 H 0.099 0.901 37 H 0.111 0.889 38 H 0.073 0.927 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.081 0.919 42 H 0.101 0.899 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.744 2.657 11.927 12.242 hybrid contribution 0.211 -0.183 -1.537 1.562 sum 0.955 2.474 10.390 10.723 Atomic orbital electron populations 1.22841 0.79948 1.01221 1.01194 1.86553 1.20887 1.36895 1.85758 1.25575 0.93510 0.80214 0.70204 1.90453 1.66623 1.36318 1.45509 1.20511 0.85647 0.86610 1.01473 1.44177 1.75506 1.07286 1.01627 1.19314 1.34827 1.01029 0.82773 0.90100 1.24732 0.97565 0.99443 0.97968 1.69857 1.28039 1.30531 1.26326 0.86147 0.79307 0.77740 0.83169 1.20309 1.21411 1.21947 1.21594 0.96163 0.95503 0.87958 1.23035 0.99452 0.98401 0.88190 1.62529 1.43007 1.13778 1.07117 1.22757 1.00673 0.95531 0.92418 1.22622 0.92172 0.89779 0.96471 1.87935 1.47209 1.40558 1.54888 1.22172 0.98183 0.89685 0.86874 0.91974 1.21741 0.98274 0.97830 1.02275 1.22793 0.94757 0.95428 0.97691 0.92894 0.90247 0.93701 0.86708 0.93241 0.93223 0.92763 0.94358 0.90515 0.90350 0.93713 0.90115 0.88889 0.92721 0.91842 0.90957 0.91946 0.89905 0.93423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.77 10.56 101.05 1.07 1.83 16 2 O -0.38 -8.33 10.57 -39.26 -0.41 -8.74 16 3 C 0.46 11.19 5.89 36.00 0.21 11.40 16 4 O -0.50 -13.39 13.52 -18.75 -0.25 -13.65 16 5 C 0.19 4.33 5.59 -5.19 -0.03 4.30 16 6 N -0.57 -13.52 2.09 -174.61 -0.37 -13.89 16 7 C -0.25 -6.60 9.70 -15.06 -0.15 -6.75 16 8 H 0.08 2.10 7.92 -52.48 -0.42 1.69 16 9 C 0.00 0.01 4.89 -17.43 -0.09 -0.07 16 10 N -0.90 -25.14 9.01 55.49 0.50 -24.64 16 11 Si 0.91 21.28 29.62 -169.99 -5.04 16.25 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 13 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 14 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 15 C 0.12 2.33 5.00 -4.04 -0.02 2.31 16 16 C 0.04 0.76 4.90 -3.82 -0.02 0.74 16 17 N -0.54 -8.91 4.94 -234.31 -1.16 -10.07 16 18 C 0.01 0.21 5.33 -3.71 -0.02 0.19 16 19 C 0.07 0.83 7.01 37.21 0.26 1.09 16 20 O -0.39 -5.43 10.47 -35.23 -0.37 -5.80 16 21 C 0.09 1.16 3.42 -26.68 -0.09 1.07 16 22 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 23 C -0.14 -1.53 9.57 37.16 0.36 -1.17 16 24 C 0.02 0.32 4.41 -3.71 -0.02 0.31 16 25 H 0.05 1.01 8.13 -51.93 -0.42 0.59 16 26 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 27 H 0.04 0.76 8.13 -51.93 -0.42 0.34 16 28 H 0.12 2.87 6.26 -51.93 -0.33 2.55 16 29 H 0.05 0.98 7.91 -51.93 -0.41 0.57 16 30 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 31 H 0.05 1.08 6.28 -51.93 -0.33 0.75 16 32 H 0.04 0.71 6.38 -51.92 -0.33 0.38 16 33 H 0.08 1.67 6.36 -51.93 -0.33 1.34 16 34 H 0.08 1.78 8.14 -51.93 -0.42 1.36 16 35 H 0.04 0.67 6.59 -51.93 -0.34 0.33 16 36 H 0.08 1.13 8.12 -51.93 -0.42 0.70 16 37 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 43 H 0.05 0.75 6.40 -51.93 -0.33 0.42 16 LS Contribution 337.90 15.07 5.09 5.09 Total: -1.00 -30.54 337.90 -7.55 -38.10 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -7.02 Total: 2.10 kcal Atomic # 6 Polarization: 13.78 SS G_CDS: 1.47 Total: 15.25 kcal Atomic # 7 Polarization: -47.57 SS G_CDS: -1.02 Total: -48.60 kcal Atomic # 8 Polarization: -27.15 SS G_CDS: -1.04 Total: -28.19 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.04 Total: 16.25 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.54 -7.55 -38.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191530711.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.635 kcal (2) G-P(sol) polarization free energy of solvation -30.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds