Wall clock time and date at job start Tue Mar 31 2020 02:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34230 * 116.99829 * 2 1 4 4 O 1.20826 * 119.99774 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00034 * 179.97438 * 3 2 1 6 6 N 1.46504 * 109.47153 * 179.97438 * 5 3 2 7 7 C 1.36931 * 120.00294 * 270.00492 * 6 5 3 8 8 H 1.08005 * 120.00297 * 187.79078 * 7 6 5 9 9 C 1.38815 * 119.99990 * 7.78575 * 7 6 5 10 10 N 1.31623 * 119.99864 * 25.58741 * 9 7 6 11 11 Si 1.86803 * 120.00029 * 205.58701 * 9 7 6 12 12 H 1.48497 * 109.47138 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.46842 * 120.00445 * 11 9 7 14 14 H 1.48507 * 109.46810 * 239.99890 * 11 9 7 15 15 C 1.46496 * 119.99771 * 90.00118 * 6 5 3 16 16 C 1.53001 * 109.47363 * 271.84889 * 15 6 5 17 17 N 1.46903 * 109.46943 * 180.02562 * 16 15 6 18 18 C 1.47011 * 111.00176 * 293.94884 * 17 16 15 19 19 C 1.53096 * 109.25997 * 182.39579 * 18 17 16 20 20 O 1.43021 * 109.25769 * 303.15443 * 19 18 17 21 21 C 1.43014 * 113.74091 * 58.66667 * 20 19 18 22 22 H 1.09005 * 109.50270 * 61.26654 * 21 20 19 23 23 C 1.52998 * 109.50926 * 181.35383 * 21 20 19 24 24 C 1.47017 * 111.00259 * 57.59028 * 17 16 15 25 25 H 1.09002 * 109.46644 * 60.00185 * 1 2 3 26 26 H 1.09003 * 109.46976 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47221 * 300.00264 * 1 2 3 28 28 H 1.08994 * 109.46717 * 60.00491 * 5 3 2 29 29 H 1.08996 * 109.47126 * 299.99964 * 5 3 2 30 30 H 0.96994 * 119.99824 * 179.97438 * 10 9 7 31 31 H 1.09004 * 109.47548 * 151.84352 * 15 6 5 32 32 H 1.09007 * 109.47490 * 31.85006 * 15 6 5 33 33 H 1.09001 * 109.47215 * 60.00218 * 16 15 6 34 34 H 1.08994 * 109.47089 * 299.99864 * 16 15 6 35 35 H 1.09005 * 109.50493 * 62.46162 * 18 17 16 36 36 H 1.08997 * 109.50608 * 302.33266 * 18 17 16 37 37 H 1.08994 * 109.50595 * 183.22160 * 19 18 17 38 38 H 1.08995 * 109.50741 * 63.08814 * 19 18 17 39 39 H 1.08991 * 109.47438 * 59.91364 * 23 21 20 40 40 H 1.09006 * 109.47172 * 179.97438 * 23 21 20 41 41 H 1.09006 * 109.46736 * 299.91242 * 23 21 20 42 42 H 1.09004 * 109.50541 * 57.66871 * 24 17 16 43 43 H 1.08998 * 109.50174 * 297.53807 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9817 2.6799 -0.0002 7 6 4.1762 3.3358 -1.1863 8 1 4.6019 4.3284 -1.1911 9 6 3.8264 2.7248 -2.3827 10 7 2.8909 1.7990 -2.4000 11 14 4.6833 3.2166 -3.9681 12 1 5.6889 4.2708 -3.6808 13 1 5.3617 2.0318 -4.5521 14 1 3.6805 3.7377 -4.9316 15 6 4.1888 3.3831 1.2682 16 6 2.8669 3.9980 1.7323 17 7 3.0749 4.7036 3.0038 18 6 3.4189 3.7618 4.0790 19 6 3.5676 4.5300 5.3948 20 8 4.5543 5.5530 5.2349 21 6 4.2508 6.4883 4.1964 22 1 3.3160 6.9988 4.4282 23 6 5.3801 7.5148 4.0873 24 6 4.1089 5.7399 2.8684 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 3.9563 0.7807 -0.8892 29 1 3.9557 0.7810 0.8908 30 1 2.6463 1.3725 -3.2361 31 1 4.9279 4.1722 1.1297 32 1 4.5458 2.6790 2.0200 33 1 2.1279 3.2088 1.8709 34 1 2.5100 4.7020 0.9806 35 1 4.3587 3.2640 3.8398 36 1 2.6277 3.0187 4.1787 37 1 3.8785 3.8446 6.1832 38 1 2.6131 4.9835 5.6615 39 1 6.3144 7.0038 3.8555 40 1 5.1483 8.2271 3.2953 41 1 5.4813 8.0456 5.0340 42 1 3.8213 6.4407 2.0846 43 1 5.0596 5.2737 2.6100 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191530711.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:26:27 Heat of formation + Delta-G solvation = -111.999435 kcal Electronic energy + Delta-G solvation = -24471.537353 eV Core-core repulsion = 20938.557431 eV Total energy + Delta-G solvation = -3532.979921 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.95892 -40.61087 -38.22450 -36.84111 -36.19098 -33.73096 -33.37223 -30.81485 -29.65834 -28.57144 -27.68102 -26.72395 -24.73259 -23.65241 -22.62712 -21.64230 -20.78141 -18.90340 -18.08356 -17.58760 -17.40286 -17.09176 -16.79879 -16.56356 -16.33627 -15.86546 -15.72663 -15.52696 -14.85814 -14.67771 -14.15293 -13.99623 -13.83683 -13.56417 -13.40465 -13.22351 -13.09368 -12.88573 -12.74753 -12.69851 -12.43284 -12.27535 -12.11457 -12.06593 -11.95485 -11.51629 -11.41006 -11.28712 -11.09388 -10.57942 -10.55167 -9.63833 -8.83194 -8.00261 -5.25929 1.45405 1.48985 1.58525 2.01426 2.31961 2.53184 2.76590 2.92528 3.21047 3.55422 3.82944 4.02413 4.03403 4.14649 4.22877 4.26364 4.38357 4.43110 4.45913 4.51114 4.52560 4.61171 4.63332 4.67054 4.75401 4.78910 4.87755 4.91764 4.96606 5.00283 5.10850 5.15752 5.29026 5.39713 5.58120 5.91413 5.99962 6.05854 6.17918 6.24927 6.98118 7.50014 7.75796 8.10919 9.09515 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.015796 B = 0.005506 C = 0.004311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.148301 B = 5083.720297 C = 6493.436408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.387 6.387 3 C 0.467 3.533 4 O -0.536 6.536 5 C 0.186 3.814 6 N -0.579 5.579 7 C -0.257 4.257 8 H 0.078 0.922 9 C -0.047 4.047 10 N -0.926 5.926 11 Si 0.967 3.033 12 H -0.269 1.269 13 H -0.286 1.286 14 H -0.303 1.303 15 C 0.120 3.880 16 C 0.062 3.938 17 N -0.544 5.544 18 C 0.013 3.987 19 C 0.069 3.931 20 O -0.396 6.396 21 C 0.091 3.909 22 H 0.065 0.935 23 C -0.139 4.139 24 C 0.022 3.978 25 H 0.033 0.967 26 H 0.124 0.876 27 H 0.052 0.948 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.250 0.750 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.041 0.959 35 H 0.041 0.959 36 H 0.084 0.916 37 H 0.120 0.880 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.084 0.916 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.978 2.173 13.286 13.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.304 6.304 3 C 0.309 3.691 4 O -0.424 6.424 5 C 0.056 3.944 6 N -0.299 5.299 7 C -0.386 4.386 8 H 0.096 0.904 9 C -0.242 4.242 10 N -0.573 5.573 11 Si 0.796 3.204 12 H -0.193 1.193 13 H -0.212 1.212 14 H -0.231 1.231 15 C -0.006 4.006 16 C -0.068 4.068 17 N -0.269 5.269 18 C -0.115 4.115 19 C -0.008 4.008 20 O -0.316 6.316 21 C 0.033 3.967 22 H 0.083 0.917 23 C -0.197 4.197 24 C -0.106 4.106 25 H 0.052 0.948 26 H 0.143 0.857 27 H 0.070 0.930 28 H 0.113 0.887 29 H 0.101 0.899 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.102 0.898 37 H 0.138 0.862 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.103 0.897 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 1.454 2.668 13.405 13.745 hybrid contribution -0.069 -0.218 -1.912 1.926 sum 1.385 2.450 11.493 11.833 Atomic orbital electron populations 1.23131 0.77622 1.04033 1.00622 1.86504 1.23127 1.35560 1.85254 1.25644 0.93916 0.80281 0.69296 1.90438 1.67414 1.37451 1.47076 1.20505 0.85365 0.86454 1.02037 1.44322 1.75678 1.07745 1.02157 1.19535 1.34130 1.00990 0.83988 0.90407 1.25397 0.98180 1.00066 1.00534 1.70001 1.29207 1.31797 1.26302 0.85209 0.78063 0.77510 0.79575 1.19298 1.21203 1.23088 1.21652 0.96287 0.95723 0.86985 1.22544 0.98422 0.96835 0.88971 1.62493 1.44176 1.14227 1.05977 1.22861 1.00508 0.95528 0.92590 1.22742 0.92426 0.89775 0.95828 1.87937 1.47841 1.40901 1.54896 1.22230 0.99369 0.89684 0.85378 0.91728 1.21744 0.97082 0.97393 1.03471 1.22851 0.93686 0.94990 0.99090 0.94807 0.85738 0.92967 0.88693 0.89861 0.94002 0.92650 0.92410 0.92573 0.94017 0.94075 0.89762 0.86168 0.92189 0.92177 0.89713 0.90682 0.90435 0.94152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.38 10.56 113.37 1.20 2.58 16 2 O -0.39 -16.59 10.57 -51.41 -0.54 -17.14 16 3 C 0.47 22.59 5.89 71.24 0.42 23.01 16 4 O -0.54 -29.03 13.52 21.96 0.30 -28.74 16 5 C 0.19 8.58 5.59 85.63 0.48 9.06 16 6 N -0.58 -27.77 2.09 -706.34 -1.48 -29.25 16 7 C -0.26 -13.66 9.70 84.04 0.81 -12.84 16 8 H 0.08 4.09 7.92 -2.91 -0.02 4.06 16 9 C -0.05 -2.54 4.89 84.86 0.41 -2.12 16 10 N -0.93 -52.50 9.01 21.65 0.20 -52.30 16 11 Si 0.97 44.27 29.62 68.60 2.03 46.30 16 12 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 13 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 14 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 15 C 0.12 4.82 5.00 86.38 0.43 5.25 16 16 C 0.06 2.49 4.90 86.30 0.42 2.91 16 17 N -0.54 -17.69 4.94 -895.21 -4.42 -22.11 16 18 C 0.01 0.36 5.33 86.31 0.46 0.82 16 19 C 0.07 1.55 7.01 72.01 0.50 2.06 16 20 O -0.40 -10.21 10.47 -148.98 -1.56 -11.77 16 21 C 0.09 2.22 3.42 30.63 0.10 2.33 16 22 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 23 C -0.14 -2.68 9.57 71.98 0.69 -1.99 16 24 C 0.02 0.64 4.41 86.31 0.38 1.02 16 25 H 0.03 1.28 8.13 -2.39 -0.02 1.27 16 26 H 0.12 3.13 8.14 -2.39 -0.02 3.11 16 27 H 0.05 1.72 8.13 -2.39 -0.02 1.70 16 28 H 0.10 4.80 6.26 -2.39 -0.01 4.78 16 29 H 0.08 3.21 7.91 -2.39 -0.02 3.19 16 30 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 31 H 0.06 2.19 6.28 -2.38 -0.01 2.18 16 32 H 0.06 2.08 6.38 -2.38 -0.02 2.07 16 33 H 0.06 2.49 6.36 -2.39 -0.02 2.47 16 34 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.04 1.15 6.59 -2.38 -0.02 1.14 16 36 H 0.08 2.23 8.12 -2.39 -0.02 2.21 16 37 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 41 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 42 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 43 H 0.04 1.23 6.40 -2.39 -0.02 1.22 16 Total: -1.00 -65.99 337.90 1.83 -64.17 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: 0.98 Total: 18.74 kcal Atomic # 6 Polarization: 25.77 SS G_CDS: 6.32 Total: 32.09 kcal Atomic # 7 Polarization: -97.96 SS G_CDS: -5.70 Total: -103.66 kcal Atomic # 8 Polarization: -55.83 SS G_CDS: -1.81 Total: -57.64 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -65.99 1.83 -64.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191530711.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.831 kcal (2) G-P(sol) polarization free energy of solvation -65.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds