Wall clock time and date at job start Tue Mar 31 2020 03:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 114.00002 * 2 1 4 4 C 1.52995 * 109.47434 * 180.02562 * 3 2 1 5 5 O 1.42899 * 109.47250 * 64.99630 * 4 3 2 6 6 C 1.42896 * 114.00180 * 180.02562 * 5 4 3 7 7 C 1.50702 * 109.47400 * 180.02562 * 6 5 4 8 8 O 1.21277 * 119.99403 * 359.97438 * 7 6 5 9 9 N 1.34775 * 119.99899 * 180.02562 * 7 6 5 10 10 C 1.46503 * 119.99376 * 180.02562 * 9 7 6 11 11 C 1.53065 * 109.44591 * 84.79556 * 10 9 7 12 12 C 1.53192 * 109.29648 * 181.23295 * 11 10 9 13 13 N 1.46922 * 108.89269 * 305.57538 * 12 11 10 14 14 C 1.36942 * 120.62796 * 233.51528 * 13 12 11 15 15 H 1.08007 * 119.99636 * 151.83092 * 14 13 12 16 16 C 1.38806 * 120.00203 * 331.83144 * 14 13 12 17 17 N 1.31624 * 120.00191 * 343.08250 * 16 14 13 18 18 Si 1.86800 * 120.00146 * 163.07925 * 16 14 13 19 19 H 1.48503 * 109.47195 * 89.99708 * 18 16 14 20 20 H 1.48498 * 109.47355 * 210.00264 * 18 16 14 21 21 H 1.48504 * 109.46850 * 330.00278 * 18 16 14 22 22 C 1.46924 * 118.73925 * 53.53382 * 13 12 11 23 23 C 1.53049 * 109.45272 * 204.99544 * 10 9 7 24 24 H 1.09004 * 109.47154 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47474 * 300.00040 * 1 2 3 26 26 H 1.09000 * 109.47594 * 60.00075 * 1 2 3 27 27 H 1.08997 * 109.46935 * 59.99597 * 3 2 1 28 28 H 1.09002 * 109.46606 * 300.00105 * 3 2 1 29 29 H 1.09003 * 109.46558 * 305.00071 * 4 3 2 30 30 H 1.08996 * 109.46962 * 185.00082 * 4 3 2 31 31 H 1.09003 * 109.46818 * 60.00127 * 6 5 4 32 32 H 1.09000 * 109.47256 * 300.00193 * 6 5 4 33 33 H 0.96995 * 120.00047 * 359.97438 * 9 7 6 34 34 H 1.08996 * 109.45813 * 324.96250 * 10 9 7 35 35 H 1.09005 * 109.39523 * 61.35360 * 11 10 9 36 36 H 1.09004 * 109.62174 * 301.25047 * 11 10 9 37 37 H 1.09003 * 109.58615 * 185.71531 * 12 11 10 38 38 H 1.08998 * 109.58372 * 65.43477 * 12 11 10 39 39 H 0.96995 * 120.00379 * 180.02562 * 17 16 14 40 40 H 1.09007 * 109.58325 * 66.18371 * 22 13 12 41 41 H 1.08996 * 109.58499 * 186.46256 * 22 13 12 42 42 H 1.09002 * 109.49883 * 58.67895 * 23 10 9 43 43 H 1.08997 * 109.52642 * 298.59203 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 8 3.9648 0.5797 -1.2219 6 6 5.3811 0.4193 -1.3246 7 6 5.7194 -0.2241 -2.6447 8 8 4.8348 -0.5167 -3.4209 9 7 7.0050 -0.4750 -2.9621 10 6 7.3339 -1.0999 -4.2457 11 6 7.4251 -0.0221 -5.3287 12 6 7.7386 -0.6823 -6.6750 13 7 8.9495 -1.5020 -6.5323 14 6 10.0114 -1.3315 -7.3800 15 1 11.0124 -1.5592 -7.0442 16 6 9.8013 -0.8659 -8.6707 17 7 8.5948 -0.9029 -9.1954 18 14 11.2309 -0.1868 -9.6629 19 1 11.8683 -1.2873 -10.4297 20 1 10.7329 0.8484 -10.6038 21 1 12.2282 0.4182 -8.7438 22 6 8.9993 -2.5085 -5.4630 23 6 8.6752 -1.8277 -4.1295 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.6885 1.8464 0.8899 28 1 1.6885 1.8463 -0.8900 29 1 3.8513 0.5683 0.8410 30 1 3.9784 2.1766 0.0889 31 1 5.7349 -0.2133 -0.5104 32 1 5.8628 1.3951 -1.2623 33 1 7.7124 -0.2412 -2.3411 34 1 6.5549 -1.8144 -4.5119 35 1 8.2188 0.6804 -5.0743 36 1 6.4760 0.5098 -5.3966 37 1 7.9048 0.0868 -7.4293 38 1 6.9029 -1.3143 -6.9754 39 1 8.4480 -0.5779 -10.0975 40 1 8.2658 -3.2899 -5.6623 41 1 9.9966 -2.9461 -5.4194 42 1 8.6142 -2.5795 -3.3426 43 1 9.4592 -1.1103 -3.8873 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000223737198.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:47 Heat of formation + Delta-G solvation = -106.227121 kcal Electronic energy + Delta-G solvation = -22803.147084 eV Core-core repulsion = 19270.417469 eV Total energy + Delta-G solvation = -3532.729615 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.76083 -38.53166 -37.53835 -36.82542 -34.35772 -32.19107 -30.96285 -30.07176 -29.57682 -27.53122 -26.42800 -24.76762 -22.83734 -22.23499 -21.95453 -20.24572 -19.28676 -17.34178 -17.21796 -17.07654 -16.54598 -16.02201 -15.76151 -15.34016 -15.19873 -14.71953 -14.31266 -14.00217 -13.67351 -13.48338 -13.03344 -12.93452 -12.63591 -12.56262 -12.35521 -12.17065 -11.67634 -11.47933 -11.34544 -11.10526 -10.90975 -10.69954 -10.36843 -10.23877 -10.04220 -9.97597 -9.90335 -9.74601 -9.73035 -9.38072 -8.68144 -8.40007 -6.66014 -5.76499 -3.19690 2.81538 2.86951 3.38709 3.45650 3.47651 3.48997 3.91138 4.51003 4.65279 4.82077 4.85894 4.96057 5.00034 5.06231 5.07132 5.13079 5.19658 5.33545 5.40812 5.43590 5.44309 5.47899 5.66015 5.85398 6.10649 6.26232 6.37781 6.45950 6.62988 6.67494 6.76131 6.81348 6.90508 6.95578 7.00119 7.40200 7.69991 7.75518 7.81322 8.45887 8.47720 9.22952 9.86373 10.43301 11.32100 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.036041 B = 0.002704 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.698269 B =10351.911426 C =10571.401884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.063 3.937 4 C 0.061 3.939 5 O -0.354 6.354 6 C 0.044 3.956 7 C 0.509 3.491 8 O -0.517 6.517 9 N -0.725 5.725 10 C 0.152 3.848 11 C -0.147 4.147 12 C 0.173 3.827 13 N -0.593 5.593 14 C -0.254 4.254 15 H 0.065 0.935 16 C 0.002 3.998 17 N -0.901 5.901 18 Si 0.902 3.098 19 H -0.287 1.287 20 H -0.290 1.290 21 H -0.280 1.280 22 C 0.148 3.852 23 C -0.138 4.138 24 H 0.086 0.914 25 H 0.038 0.962 26 H 0.043 0.957 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.394 0.606 34 H 0.082 0.918 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.089 0.911 38 H 0.021 0.979 39 H 0.254 0.746 40 H 0.020 0.980 41 H 0.058 0.942 42 H 0.055 0.945 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.811 5.181 21.485 23.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C -0.014 4.014 4 C -0.016 4.016 5 O -0.272 6.272 6 C -0.036 4.036 7 C 0.293 3.707 8 O -0.391 6.391 9 N -0.377 5.377 10 C 0.049 3.951 11 C -0.187 4.187 12 C 0.047 3.953 13 N -0.316 5.316 14 C -0.384 4.384 15 H 0.083 0.917 16 C -0.197 4.197 17 N -0.545 5.545 18 Si 0.732 3.268 19 H -0.214 1.214 20 H -0.216 1.216 21 H -0.205 1.205 22 C 0.021 3.979 23 C -0.178 4.178 24 H 0.105 0.895 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.227 0.773 34 H 0.100 0.900 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.107 0.893 38 H 0.039 0.961 39 H 0.064 0.936 40 H 0.038 0.962 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.543 4.783 20.578 23.182 hybrid contribution 0.999 0.894 0.028 1.341 sum -8.545 5.677 20.606 23.019 Atomic orbital electron populations 1.22747 0.81041 1.02939 0.99796 1.87983 1.19631 1.27140 1.95349 1.22539 0.92186 0.85699 1.00933 1.22584 0.93742 0.97554 0.87691 1.88107 1.19618 1.81965 1.37470 1.22240 0.84031 1.00725 0.96634 1.20154 0.83208 0.79498 0.87828 1.90749 1.46843 1.50534 1.51005 1.46220 1.06834 1.63460 1.21215 1.21053 0.97304 0.95161 0.81560 1.22569 1.00246 0.97807 0.98064 1.20753 0.87781 0.94697 0.92075 1.44106 1.16099 1.37650 1.33706 1.19155 0.86702 1.40890 0.91641 0.91681 1.25074 0.96482 1.01964 0.96155 1.70036 1.20478 1.49089 1.14913 0.86310 0.81932 0.78718 0.79861 1.21387 1.21569 1.20525 1.20843 0.99052 0.91110 0.86922 1.22328 0.95764 0.99518 1.00165 0.89539 0.94316 0.93884 0.91775 0.92155 0.92277 0.91594 0.90490 0.90526 0.77256 0.90007 0.92700 0.92798 0.89276 0.96107 0.93568 0.96182 0.92318 0.92595 0.91847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.37 16 2 O -0.38 -4.47 10.67 -40.08 -0.43 -4.90 16 3 C 0.06 0.57 6.32 37.16 0.23 0.80 16 4 C 0.06 0.55 6.32 37.16 0.23 0.79 16 5 O -0.35 -4.84 9.84 -59.73 -0.59 -5.42 16 6 C 0.04 0.49 6.42 36.01 0.23 0.72 16 7 C 0.51 7.97 7.87 -10.99 -0.09 7.88 16 8 O -0.52 -10.86 16.16 -14.35 -0.23 -11.09 16 9 N -0.72 -10.23 5.08 -53.75 -0.27 -10.50 16 10 C 0.15 2.71 2.41 -67.87 -0.16 2.54 16 11 C -0.15 -2.98 5.66 -26.60 -0.15 -3.13 16 12 C 0.17 4.29 5.30 -3.71 -0.02 4.27 16 13 N -0.59 -14.96 3.00 -172.32 -0.52 -15.48 16 14 C -0.25 -6.98 9.58 -15.06 -0.14 -7.13 16 15 H 0.07 1.74 7.89 -52.48 -0.41 1.32 16 16 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 17 N -0.90 -26.61 11.20 55.49 0.62 -25.98 16 18 Si 0.90 21.75 29.59 -169.99 -5.03 16.72 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 22 C 0.15 3.07 6.52 -3.71 -0.02 3.05 16 23 C -0.14 -2.30 5.55 -26.61 -0.15 -2.44 16 24 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 26 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.39 4.11 8.60 -40.82 -0.35 3.76 16 34 H 0.08 1.66 7.58 -51.93 -0.39 1.27 16 35 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.09 2.45 6.06 -51.93 -0.31 2.14 16 38 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 353.22 15.07 5.32 5.32 Total: -1.00 -35.35 353.22 -7.49 -42.85 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -7.36 Total: -0.19 kcal Atomic # 6 Polarization: 7.70 SS G_CDS: 0.99 Total: 8.69 kcal Atomic # 7 Polarization: -51.80 SS G_CDS: -0.17 Total: -51.97 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: -1.25 Total: -21.41 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.72 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.35 -7.49 -42.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223737198.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.381 kcal (2) G-P(sol) polarization free energy of solvation -35.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds