Wall clock time and date at job start Tue Mar 31 2020 03:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 114.00002 * 2 1 4 4 C 1.52995 * 109.47434 * 180.02562 * 3 2 1 5 5 O 1.42899 * 109.47250 * 64.99630 * 4 3 2 6 6 C 1.42896 * 114.00180 * 180.02562 * 5 4 3 7 7 C 1.50702 * 109.47400 * 180.02562 * 6 5 4 8 8 O 1.21277 * 119.99403 * 359.97438 * 7 6 5 9 9 N 1.34775 * 119.99899 * 180.02562 * 7 6 5 10 10 C 1.46503 * 119.99376 * 180.02562 * 9 7 6 11 11 C 1.53065 * 109.44591 * 84.79556 * 10 9 7 12 12 C 1.53192 * 109.29648 * 181.23295 * 11 10 9 13 13 N 1.46922 * 108.89269 * 305.57538 * 12 11 10 14 14 C 1.36942 * 120.62796 * 233.51528 * 13 12 11 15 15 H 1.08007 * 119.99636 * 151.83092 * 14 13 12 16 16 C 1.38806 * 120.00203 * 331.83144 * 14 13 12 17 17 N 1.31624 * 120.00191 * 343.08250 * 16 14 13 18 18 Si 1.86800 * 120.00146 * 163.07925 * 16 14 13 19 19 H 1.48503 * 109.47195 * 89.99708 * 18 16 14 20 20 H 1.48498 * 109.47355 * 210.00264 * 18 16 14 21 21 H 1.48504 * 109.46850 * 330.00278 * 18 16 14 22 22 C 1.46924 * 118.73925 * 53.53382 * 13 12 11 23 23 C 1.53049 * 109.45272 * 204.99544 * 10 9 7 24 24 H 1.09004 * 109.47154 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47474 * 300.00040 * 1 2 3 26 26 H 1.09000 * 109.47594 * 60.00075 * 1 2 3 27 27 H 1.08997 * 109.46935 * 59.99597 * 3 2 1 28 28 H 1.09002 * 109.46606 * 300.00105 * 3 2 1 29 29 H 1.09003 * 109.46558 * 305.00071 * 4 3 2 30 30 H 1.08996 * 109.46962 * 185.00082 * 4 3 2 31 31 H 1.09003 * 109.46818 * 60.00127 * 6 5 4 32 32 H 1.09000 * 109.47256 * 300.00193 * 6 5 4 33 33 H 0.96995 * 120.00047 * 359.97438 * 9 7 6 34 34 H 1.08996 * 109.45813 * 324.96250 * 10 9 7 35 35 H 1.09005 * 109.39523 * 61.35360 * 11 10 9 36 36 H 1.09004 * 109.62174 * 301.25047 * 11 10 9 37 37 H 1.09003 * 109.58615 * 185.71531 * 12 11 10 38 38 H 1.08998 * 109.58372 * 65.43477 * 12 11 10 39 39 H 0.96995 * 120.00379 * 180.02562 * 17 16 14 40 40 H 1.09007 * 109.58325 * 66.18371 * 22 13 12 41 41 H 1.08996 * 109.58499 * 186.46256 * 22 13 12 42 42 H 1.09002 * 109.49883 * 58.67895 * 23 10 9 43 43 H 1.08997 * 109.52642 * 298.59203 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 8 3.9648 0.5797 -1.2219 6 6 5.3811 0.4193 -1.3246 7 6 5.7194 -0.2241 -2.6447 8 8 4.8348 -0.5167 -3.4209 9 7 7.0050 -0.4750 -2.9621 10 6 7.3339 -1.0999 -4.2457 11 6 7.4251 -0.0221 -5.3287 12 6 7.7386 -0.6823 -6.6750 13 7 8.9495 -1.5020 -6.5323 14 6 10.0114 -1.3315 -7.3800 15 1 11.0124 -1.5592 -7.0442 16 6 9.8013 -0.8659 -8.6707 17 7 8.5948 -0.9029 -9.1954 18 14 11.2309 -0.1868 -9.6629 19 1 11.8683 -1.2873 -10.4297 20 1 10.7329 0.8484 -10.6038 21 1 12.2282 0.4182 -8.7438 22 6 8.9993 -2.5085 -5.4630 23 6 8.6752 -1.8277 -4.1295 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.6885 1.8464 0.8899 28 1 1.6885 1.8463 -0.8900 29 1 3.8513 0.5683 0.8410 30 1 3.9784 2.1766 0.0889 31 1 5.7349 -0.2133 -0.5104 32 1 5.8628 1.3951 -1.2623 33 1 7.7124 -0.2412 -2.3411 34 1 6.5549 -1.8144 -4.5119 35 1 8.2188 0.6804 -5.0743 36 1 6.4760 0.5098 -5.3966 37 1 7.9048 0.0868 -7.4293 38 1 6.9029 -1.3143 -6.9754 39 1 8.4480 -0.5779 -10.0975 40 1 8.2658 -3.2899 -5.6623 41 1 9.9966 -2.9461 -5.4194 42 1 8.6142 -2.5795 -3.3426 43 1 9.4592 -1.1103 -3.8873 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000223737198.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:47 Heat of formation + Delta-G solvation = -132.559055 kcal Electronic energy + Delta-G solvation = -22804.288922 eV Core-core repulsion = 19270.417469 eV Total energy + Delta-G solvation = -3533.871453 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.01913 -39.43928 -38.85925 -37.88909 -35.99012 -33.96396 -32.04845 -31.59596 -31.14923 -28.62241 -27.13504 -26.57429 -23.93462 -23.68472 -23.46797 -21.54424 -20.95905 -18.88784 -18.21855 -17.95994 -17.79139 -17.11390 -16.78300 -16.67309 -16.13970 -16.06947 -15.62792 -15.39525 -15.34799 -14.97783 -14.70053 -14.32282 -14.07404 -13.64750 -13.35259 -13.19555 -13.03823 -12.93469 -12.67268 -12.54430 -12.34793 -12.12721 -12.07436 -12.00346 -11.85389 -11.54392 -11.38921 -10.79660 -10.68685 -10.61085 -10.58283 -10.00814 -8.71826 -7.87572 -5.34400 1.47563 1.49096 1.59099 1.62992 1.86024 2.51775 2.88306 3.02267 3.28744 3.64205 3.77260 3.90829 4.06555 4.11081 4.23658 4.25703 4.33182 4.35381 4.45190 4.47143 4.47841 4.57064 4.59997 4.66345 4.78788 4.79985 4.85347 4.87121 5.04816 5.07873 5.13038 5.31411 5.45339 5.54335 5.63879 5.68795 6.08111 6.27586 6.38319 6.65229 7.12760 7.32671 7.83779 8.36964 9.19737 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.036041 B = 0.002704 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.698269 B =10351.911426 C =10571.401884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.418 6.418 3 C 0.055 3.945 4 C 0.056 3.944 5 O -0.399 6.399 6 C 0.051 3.949 7 C 0.502 3.498 8 O -0.581 6.581 9 N -0.706 5.706 10 C 0.162 3.838 11 C -0.130 4.130 12 C 0.182 3.818 13 N -0.610 5.610 14 C -0.261 4.261 15 H 0.076 0.924 16 C -0.057 4.057 17 N -0.940 5.940 18 Si 0.971 3.029 19 H -0.284 1.284 20 H -0.296 1.296 21 H -0.265 1.265 22 C 0.139 3.861 23 C -0.119 4.119 24 H 0.089 0.911 25 H 0.061 0.939 26 H 0.040 0.960 27 H 0.097 0.903 28 H 0.049 0.951 29 H 0.071 0.929 30 H 0.097 0.903 31 H 0.112 0.888 32 H 0.114 0.886 33 H 0.419 0.581 34 H 0.051 0.949 35 H 0.066 0.934 36 H 0.042 0.958 37 H 0.055 0.945 38 H -0.015 1.015 39 H 0.249 0.751 40 H 0.009 0.991 41 H 0.070 0.930 42 H 0.093 0.907 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.128 6.146 24.765 26.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.338 6.338 3 C -0.021 4.021 4 C -0.020 4.020 5 O -0.318 6.318 6 C -0.028 4.028 7 C 0.289 3.711 8 O -0.460 6.460 9 N -0.359 5.359 10 C 0.057 3.943 11 C -0.170 4.170 12 C 0.055 3.945 13 N -0.333 5.333 14 C -0.391 4.391 15 H 0.093 0.907 16 C -0.252 4.252 17 N -0.587 5.587 18 Si 0.799 3.201 19 H -0.211 1.211 20 H -0.223 1.223 21 H -0.190 1.190 22 C 0.014 3.986 23 C -0.159 4.159 24 H 0.107 0.893 25 H 0.080 0.920 26 H 0.059 0.941 27 H 0.115 0.885 28 H 0.067 0.933 29 H 0.090 0.910 30 H 0.115 0.885 31 H 0.130 0.870 32 H 0.132 0.868 33 H 0.256 0.744 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.061 0.939 37 H 0.074 0.926 38 H 0.003 0.997 39 H 0.058 0.942 40 H 0.027 0.973 41 H 0.088 0.912 42 H 0.111 0.889 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.814 5.753 23.941 25.833 hybrid contribution 0.420 0.549 -0.956 1.180 sum -7.394 6.302 22.986 24.955 Atomic orbital electron populations 1.22891 0.79757 1.03539 1.00821 1.87926 1.21326 1.28973 1.95593 1.22782 0.92486 0.84914 1.01934 1.22874 0.93696 0.99120 0.86322 1.88056 1.20960 1.82911 1.39922 1.22320 0.83638 1.02716 0.94141 1.21140 0.82576 0.78357 0.89018 1.90731 1.48680 1.53200 1.53374 1.45877 1.07502 1.62550 1.20014 1.20654 0.97298 0.93811 0.82570 1.22303 0.99801 0.98305 0.96611 1.20455 0.86836 0.93407 0.93751 1.44360 1.15452 1.38969 1.34539 1.19577 0.87710 1.39854 0.91937 0.90686 1.25922 0.98899 1.02862 0.97505 1.70219 1.22778 1.50659 1.15013 0.85226 0.78973 0.77694 0.78237 1.21087 1.22266 1.18970 1.21067 0.99479 0.90433 0.87664 1.22121 0.94984 1.00310 0.98459 0.89292 0.92008 0.94083 0.88492 0.93300 0.91031 0.88507 0.87022 0.86850 0.74389 0.93063 0.91570 0.93941 0.92630 0.99673 0.94192 0.97345 0.91173 0.88897 0.90187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 113.37 1.25 1.65 16 2 O -0.42 -9.52 10.67 -144.34 -1.54 -11.06 16 3 C 0.05 0.90 6.32 71.98 0.45 1.36 16 4 C 0.06 0.86 6.32 71.98 0.45 1.31 16 5 O -0.40 -10.25 9.84 -125.55 -1.24 -11.49 16 6 C 0.05 0.97 6.42 71.24 0.46 1.43 16 7 C 0.50 14.98 7.87 87.66 0.69 15.67 16 8 O -0.58 -24.93 16.16 16.02 0.26 -24.67 16 9 N -0.71 -18.10 5.08 -442.35 -2.25 -20.34 16 10 C 0.16 5.58 2.41 45.03 0.11 5.69 16 11 C -0.13 -5.34 5.66 30.68 0.17 -5.17 16 12 C 0.18 9.43 5.30 86.36 0.46 9.89 16 13 N -0.61 -31.10 3.00 -699.10 -2.09 -33.20 16 14 C -0.26 -14.34 9.58 84.03 0.81 -13.53 16 15 H 0.08 3.91 7.89 -2.91 -0.02 3.89 16 16 C -0.06 -3.24 4.92 84.86 0.42 -2.82 16 17 N -0.94 -57.73 11.20 21.65 0.24 -57.48 16 18 Si 0.97 45.17 29.59 68.60 2.03 47.20 16 19 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 20 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 21 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 22 C 0.14 5.66 6.52 86.36 0.56 6.22 16 23 C -0.12 -3.64 5.55 30.67 0.17 -3.47 16 24 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 26 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.11 1.33 8.14 -2.39 -0.02 1.32 16 33 H 0.42 6.85 8.60 -92.71 -0.80 6.05 16 34 H 0.05 2.12 7.58 -2.39 -0.02 2.10 16 35 H 0.07 2.56 8.14 -2.38 -0.02 2.54 16 36 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 37 H 0.06 3.23 6.06 -2.39 -0.01 3.21 16 38 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 39 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 40 H 0.01 0.37 8.14 -2.38 -0.02 0.35 16 41 H 0.07 2.66 7.93 -2.39 -0.02 2.65 16 42 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 43 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -82.07 353.22 1.60 -80.46 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: 0.19 Total: 12.35 kcal Atomic # 6 Polarization: 12.23 SS G_CDS: 6.00 Total: 18.23 kcal Atomic # 7 Polarization: -106.93 SS G_CDS: -4.10 Total: -111.02 kcal Atomic # 8 Polarization: -44.70 SS G_CDS: -2.52 Total: -47.21 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -82.07 1.60 -80.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223737198.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.095 kcal (2) G-P(sol) polarization free energy of solvation -82.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds