Wall clock time and date at job start Tue Mar 31 2020 02:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46498 * 109.47346 * 2 1 4 4 C 1.46504 * 120.00256 * 89.99796 * 3 2 1 5 5 C 1.50700 * 109.46717 * 90.00148 * 4 3 2 6 6 H 1.07997 * 120.00699 * 359.97438 * 5 4 3 7 7 C 1.37887 * 119.99402 * 180.02562 * 5 4 3 8 8 N 1.31511 * 119.99418 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99925 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46849 * 90.00595 * 9 7 5 11 11 H 1.48498 * 109.46985 * 210.00123 * 9 7 5 12 12 H 1.48499 * 109.47544 * 330.00394 * 9 7 5 13 13 C 1.34776 * 119.99761 * 269.99480 * 3 2 1 14 14 O 1.21282 * 120.00388 * 179.97438 * 13 3 2 15 15 C 1.50701 * 120.00258 * 0.02562 * 13 3 2 16 16 N 1.46895 * 109.47491 * 173.81239 * 15 13 3 17 17 C 1.47901 * 110.99770 * 294.28037 * 16 15 13 18 18 C 1.53991 * 107.06058 * 214.15758 * 17 16 15 19 19 H 1.09002 * 110.30854 * 242.30988 * 18 17 16 20 20 O 1.42909 * 110.31000 * 120.14136 * 18 17 16 21 21 C 1.54596 * 105.14067 * 1.22449 * 18 17 16 22 22 C 1.48534 * 111.00156 * 176.88674 * 16 15 13 23 23 H 1.09004 * 110.66530 * 41.28257 * 22 16 15 24 24 C 1.52993 * 110.66861 * 278.15220 * 22 16 15 25 25 O 1.42907 * 109.47169 * 295.00189 * 24 22 16 26 26 H 1.08998 * 109.47178 * 300.00286 * 1 2 3 27 27 H 1.08998 * 109.46954 * 60.00285 * 1 2 3 28 28 H 1.09006 * 109.47352 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47368 * 239.99326 * 2 1 3 30 30 H 1.09003 * 109.47160 * 120.00132 * 2 1 3 31 31 H 1.08996 * 109.46929 * 329.99911 * 4 3 2 32 32 H 1.09000 * 109.46689 * 209.99748 * 4 3 2 33 33 H 0.97010 * 119.99543 * 179.97438 * 8 7 5 34 34 H 1.09001 * 109.46674 * 293.81022 * 15 13 3 35 35 H 1.09000 * 109.47082 * 53.80059 * 15 13 3 36 36 H 1.09006 * 109.92097 * 333.51300 * 17 16 15 37 37 H 1.09004 * 109.92158 * 94.60357 * 17 16 15 38 38 H 0.96695 * 113.99513 * 61.45563 * 20 18 17 39 39 H 1.09003 * 110.72255 * 140.31499 * 21 18 17 40 40 H 1.08992 * 110.72105 * 263.42233 * 21 18 17 41 41 H 1.09005 * 109.47428 * 54.99660 * 24 22 16 42 42 H 1.09002 * 109.47606 * 174.99799 * 24 22 16 43 43 H 0.96697 * 113.99692 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 1.2687 5 6 3.6858 1.8350 1.7037 6 1 4.3427 1.2302 1.0962 7 6 4.1491 2.3897 2.8780 8 7 5.3910 2.1826 3.2578 9 14 3.0127 3.4353 3.9291 10 1 2.3071 2.5691 4.9074 11 1 3.8102 4.4553 4.6562 12 1 2.0176 4.1125 3.0595 13 6 2.2431 2.0164 -1.1672 14 8 2.6469 3.1600 -1.1674 15 6 1.9914 1.3062 -2.4723 16 7 2.1668 2.2492 -3.5849 17 6 1.1358 3.3091 -3.5487 18 6 0.8082 3.6706 -5.0093 19 1 1.0613 4.7122 -5.2071 20 8 -0.5750 3.4352 -5.2803 21 6 1.6899 2.7324 -5.8651 22 6 1.9996 1.5661 -4.8931 23 1 1.1665 0.8641 -4.8569 24 6 3.2910 0.8534 -5.2991 25 8 4.3193 1.8206 -5.5215 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.5817 1.6878 2.0283 32 1 2.0956 3.1411 1.1382 33 1 5.7171 2.5731 4.0838 34 1 2.6972 0.4825 -2.5796 35 1 0.9736 0.9162 -2.4834 36 1 0.2408 2.9397 -3.0480 37 1 1.5204 4.1836 -3.0239 38 1 -1.1773 3.9652 -4.7406 39 1 1.1401 2.3737 -6.7352 40 1 2.6064 3.2370 -6.1707 41 1 3.5970 0.1744 -4.5031 42 1 3.1210 0.2867 -6.2146 43 1 5.1683 1.4388 -5.7831 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000248387299.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:37:27 Heat of formation + Delta-G solvation = -115.796912 kcal Electronic energy + Delta-G solvation = -24131.090972 eV Core-core repulsion = 20597.946380 eV Total energy + Delta-G solvation = -3533.144592 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.00115 -38.62869 -36.74409 -35.62665 -35.14072 -32.74398 -31.50273 -30.30600 -29.71434 -28.12889 -26.06522 -24.80793 -22.98139 -22.19509 -20.99030 -20.22366 -18.30223 -17.85526 -17.25288 -16.88547 -16.51422 -15.89413 -15.34806 -15.18428 -14.66945 -14.48567 -14.15658 -13.78581 -13.49808 -13.41200 -13.22697 -13.06965 -12.76320 -12.45086 -12.16175 -12.04116 -11.70865 -11.67063 -11.52706 -11.34619 -10.97038 -10.94779 -10.76474 -10.71923 -10.48034 -10.12878 -10.07692 -9.93053 -9.51258 -8.95094 -8.57026 -8.24093 -7.67783 -6.06287 -4.04508 3.27602 3.35711 3.39393 3.40563 3.56723 4.01940 4.17834 4.24407 4.41592 4.47361 4.75126 4.93487 5.06858 5.18529 5.21851 5.24052 5.27481 5.28668 5.35046 5.39718 5.52566 5.56430 5.67798 5.72085 5.76533 5.86182 5.95411 6.09458 6.13054 6.18584 6.36586 6.66822 6.90332 6.94357 7.05280 7.39844 7.48974 7.64172 7.69231 8.29760 8.50210 8.96944 9.06440 9.54288 11.07289 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.019454 B = 0.004480 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.967310 B = 6249.021504 C = 6481.720656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.596 5.596 4 C 0.218 3.782 5 C -0.527 4.527 6 H 0.074 0.926 7 C 0.072 3.928 8 N -0.898 5.898 9 Si 0.875 3.125 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.265 1.265 13 C 0.510 3.490 14 O -0.520 6.520 15 C 0.028 3.972 16 N -0.477 5.477 17 C 0.012 3.988 18 C 0.089 3.911 19 H 0.068 0.932 20 O -0.569 6.569 21 C -0.104 4.104 22 C 0.061 3.939 23 H 0.066 0.934 24 C 0.093 3.907 25 O -0.554 6.554 26 H 0.059 0.941 27 H 0.049 0.951 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.024 0.976 32 H 0.039 0.961 33 H 0.264 0.736 34 H 0.098 0.902 35 H 0.056 0.944 36 H 0.047 0.953 37 H 0.098 0.902 38 H 0.378 0.622 39 H 0.077 0.923 40 H 0.100 0.900 41 H 0.046 0.954 42 H 0.047 0.953 43 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.100 -4.534 -16.892 20.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.329 5.329 4 C 0.098 3.902 5 C -0.565 4.565 6 H 0.092 0.908 7 C -0.130 4.130 8 N -0.536 5.536 9 Si 0.702 3.298 10 H -0.202 1.202 11 H -0.209 1.209 12 H -0.189 1.189 13 C 0.295 3.705 14 O -0.395 6.395 15 C -0.103 4.103 16 N -0.202 5.202 17 C -0.116 4.116 18 C 0.030 3.970 19 H 0.086 0.914 20 O -0.375 6.375 21 C -0.141 4.141 22 C -0.047 4.047 23 H 0.084 0.916 24 C 0.014 3.986 25 O -0.358 6.358 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.103 0.897 31 H 0.041 0.959 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.116 0.884 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.116 0.884 38 H 0.225 0.775 39 H 0.096 0.904 40 H 0.119 0.881 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -10.456 -3.651 -16.929 20.230 hybrid contribution -1.031 -0.090 1.112 1.519 sum -11.487 -3.741 -15.816 19.903 Atomic orbital electron populations 1.22236 0.96907 1.01535 1.02087 1.21418 0.93265 0.84085 1.03004 1.47942 1.64682 1.13323 1.06999 1.19613 0.97066 0.93547 0.79999 1.21342 0.95417 1.32734 1.07019 0.90784 1.24858 0.95010 0.95777 0.97378 1.69902 1.15188 1.45058 1.23502 0.86865 0.81304 0.80906 0.80763 1.20163 1.20948 1.18924 1.20086 0.78660 0.87131 0.84582 1.90663 1.44173 1.17887 1.86802 1.22310 1.00916 0.95937 0.91187 1.64513 1.46254 1.09617 0.99800 1.23668 0.93775 0.97678 0.96493 1.22749 0.81230 0.99041 0.93976 0.91367 1.86499 1.16369 1.68798 1.65860 1.22435 0.99261 0.95457 0.96991 1.22900 0.95371 0.96121 0.90313 0.91628 1.21959 0.88068 0.90250 0.98310 1.86586 1.22342 1.35167 1.91751 0.92185 0.93237 0.91980 0.91671 0.89678 0.95850 0.94266 0.92610 0.88384 0.92610 0.93508 0.88426 0.77499 0.90411 0.88141 0.93545 0.93505 0.78018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.13 10.18 37.16 0.38 -1.75 16 2 C 0.11 1.65 5.85 -4.04 -0.02 1.63 16 3 N -0.60 -12.32 2.46 -175.06 -0.43 -12.75 16 4 C 0.22 5.39 4.23 -5.19 -0.02 5.37 16 5 C -0.53 -15.32 9.94 -34.44 -0.34 -15.66 16 6 H 0.07 2.37 8.06 -52.49 -0.42 1.95 16 7 C 0.07 2.12 5.47 -17.82 -0.10 2.03 16 8 N -0.90 -28.01 13.96 55.43 0.77 -27.24 16 9 Si 0.87 21.77 27.47 -169.99 -4.67 17.10 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.26 -6.45 6.54 56.52 0.37 -6.08 16 13 C 0.51 10.60 7.36 -10.99 -0.08 10.52 16 14 O -0.52 -13.09 14.61 5.56 0.08 -13.01 16 15 C 0.03 0.44 3.63 -4.98 -0.02 0.42 16 16 N -0.48 -7.42 4.66 -224.06 -1.04 -8.46 16 17 C 0.01 0.18 5.47 -2.76 -0.02 0.16 16 18 C 0.09 1.07 4.36 -25.38 -0.11 0.96 16 19 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 20 O -0.57 -6.29 13.25 -35.23 -0.47 -6.76 16 21 C -0.10 -1.22 6.17 -24.87 -0.15 -1.37 16 22 C 0.06 0.75 2.74 -65.79 -0.18 0.57 16 23 H 0.07 0.74 8.02 -51.93 -0.42 0.32 16 24 C 0.09 0.99 6.96 37.15 0.26 1.25 16 25 O -0.55 -6.70 12.36 -35.23 -0.44 -7.13 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.05 0.60 7.12 -51.93 -0.37 0.23 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.86 6.61 -51.93 -0.34 0.51 16 30 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 31 H 0.02 0.54 7.50 -51.93 -0.39 0.15 16 32 H 0.04 1.05 6.48 -51.93 -0.34 0.71 16 33 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 34 H 0.10 1.41 6.79 -51.93 -0.35 1.06 16 35 H 0.06 0.75 6.65 -51.93 -0.35 0.40 16 36 H 0.05 0.66 7.46 -51.93 -0.39 0.27 16 37 H 0.10 1.67 7.32 -51.93 -0.38 1.29 16 38 H 0.38 2.77 9.11 45.56 0.41 3.18 16 39 H 0.08 0.83 8.08 -51.93 -0.42 0.41 16 40 H 0.10 1.25 7.01 -51.93 -0.36 0.89 16 41 H 0.05 0.50 7.24 -51.93 -0.38 0.12 16 42 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.37 2.85 9.12 45.56 0.42 3.26 16 LS Contribution 343.39 15.07 5.17 5.17 Total: -1.00 -37.10 343.39 -6.77 -43.87 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -5.35 Total: 5.08 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: -0.41 Total: 4.12 kcal Atomic # 7 Polarization: -47.75 SS G_CDS: -0.70 Total: -48.45 kcal Atomic # 8 Polarization: -26.08 SS G_CDS: -0.82 Total: -26.90 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -37.10 -6.77 -43.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000248387299.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.925 kcal (2) G-P(sol) polarization free energy of solvation -37.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds