Wall clock time and date at job start Tue Mar 31 2020 02:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46498 * 109.47346 * 2 1 4 4 C 1.46504 * 120.00256 * 89.99796 * 3 2 1 5 5 C 1.50700 * 109.46717 * 90.00148 * 4 3 2 6 6 H 1.07997 * 120.00699 * 359.97438 * 5 4 3 7 7 C 1.37887 * 119.99402 * 180.02562 * 5 4 3 8 8 N 1.31511 * 119.99418 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99925 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46849 * 90.00595 * 9 7 5 11 11 H 1.48498 * 109.46985 * 210.00123 * 9 7 5 12 12 H 1.48499 * 109.47544 * 330.00394 * 9 7 5 13 13 C 1.34776 * 119.99761 * 269.99480 * 3 2 1 14 14 O 1.21282 * 120.00388 * 179.97438 * 13 3 2 15 15 C 1.50701 * 120.00258 * 0.02562 * 13 3 2 16 16 N 1.46895 * 109.47491 * 173.81239 * 15 13 3 17 17 C 1.47901 * 110.99770 * 294.28037 * 16 15 13 18 18 C 1.53991 * 107.06058 * 214.15758 * 17 16 15 19 19 H 1.09002 * 110.30854 * 242.30988 * 18 17 16 20 20 O 1.42909 * 110.31000 * 120.14136 * 18 17 16 21 21 C 1.54596 * 105.14067 * 1.22449 * 18 17 16 22 22 C 1.48534 * 111.00156 * 176.88674 * 16 15 13 23 23 H 1.09004 * 110.66530 * 41.28257 * 22 16 15 24 24 C 1.52993 * 110.66861 * 278.15220 * 22 16 15 25 25 O 1.42907 * 109.47169 * 295.00189 * 24 22 16 26 26 H 1.08998 * 109.47178 * 300.00286 * 1 2 3 27 27 H 1.08998 * 109.46954 * 60.00285 * 1 2 3 28 28 H 1.09006 * 109.47352 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47368 * 239.99326 * 2 1 3 30 30 H 1.09003 * 109.47160 * 120.00132 * 2 1 3 31 31 H 1.08996 * 109.46929 * 329.99911 * 4 3 2 32 32 H 1.09000 * 109.46689 * 209.99748 * 4 3 2 33 33 H 0.97010 * 119.99543 * 179.97438 * 8 7 5 34 34 H 1.09001 * 109.46674 * 293.81022 * 15 13 3 35 35 H 1.09000 * 109.47082 * 53.80059 * 15 13 3 36 36 H 1.09006 * 109.92097 * 333.51300 * 17 16 15 37 37 H 1.09004 * 109.92158 * 94.60357 * 17 16 15 38 38 H 0.96695 * 113.99513 * 61.45563 * 20 18 17 39 39 H 1.09003 * 110.72255 * 140.31499 * 21 18 17 40 40 H 1.08992 * 110.72105 * 263.42233 * 21 18 17 41 41 H 1.09005 * 109.47428 * 54.99660 * 24 22 16 42 42 H 1.09002 * 109.47606 * 174.99799 * 24 22 16 43 43 H 0.96697 * 113.99692 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 1.2687 5 6 3.6858 1.8350 1.7037 6 1 4.3427 1.2302 1.0962 7 6 4.1491 2.3897 2.8780 8 7 5.3910 2.1826 3.2578 9 14 3.0127 3.4353 3.9291 10 1 2.3071 2.5691 4.9074 11 1 3.8102 4.4553 4.6562 12 1 2.0176 4.1125 3.0595 13 6 2.2431 2.0164 -1.1672 14 8 2.6469 3.1600 -1.1674 15 6 1.9914 1.3062 -2.4723 16 7 2.1668 2.2492 -3.5849 17 6 1.1358 3.3091 -3.5487 18 6 0.8082 3.6706 -5.0093 19 1 1.0613 4.7122 -5.2071 20 8 -0.5750 3.4352 -5.2803 21 6 1.6899 2.7324 -5.8651 22 6 1.9996 1.5661 -4.8931 23 1 1.1665 0.8641 -4.8569 24 6 3.2910 0.8534 -5.2991 25 8 4.3193 1.8206 -5.5215 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.5817 1.6878 2.0283 32 1 2.0956 3.1411 1.1382 33 1 5.7171 2.5731 4.0838 34 1 2.6972 0.4825 -2.5796 35 1 0.9736 0.9162 -2.4834 36 1 0.2408 2.9397 -3.0480 37 1 1.5204 4.1836 -3.0239 38 1 -1.1773 3.9652 -4.7406 39 1 1.1401 2.3737 -6.7352 40 1 2.6064 3.2370 -6.1707 41 1 3.5970 0.1744 -4.5031 42 1 3.1210 0.2867 -6.2146 43 1 5.1683 1.4388 -5.7831 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000248387299.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:37:26 Heat of formation + Delta-G solvation = -149.350214 kcal Electronic energy + Delta-G solvation = -24132.545952 eV Core-core repulsion = 20597.946380 eV Total energy + Delta-G solvation = -3534.599572 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.25687 -39.97023 -37.59829 -37.03432 -36.34762 -34.87264 -32.71849 -31.76922 -30.68231 -29.80425 -27.44247 -25.85399 -24.42405 -23.86892 -22.06762 -21.19432 -19.84338 -19.10820 -18.77039 -18.11445 -17.93595 -17.29344 -16.65382 -16.55275 -16.08865 -15.71320 -15.42213 -14.95866 -14.75635 -14.72155 -14.46193 -14.28237 -14.18174 -13.85294 -13.67314 -13.39128 -13.21313 -13.00046 -12.70245 -12.59729 -12.39345 -12.33964 -12.06796 -11.92003 -11.90019 -11.75963 -11.65064 -11.03698 -10.83062 -10.75385 -10.58921 -9.46057 -9.30112 -8.34892 -6.39629 1.29561 1.34679 1.45249 1.80832 2.17748 2.30121 2.88190 2.99252 3.31174 3.40528 3.47822 3.69162 3.94265 3.99349 4.07058 4.18338 4.20708 4.32899 4.39314 4.41950 4.51743 4.58021 4.59534 4.75203 4.80253 4.83954 4.91121 4.95351 4.95936 4.98768 4.99744 5.26071 5.35111 5.46284 5.64660 5.83192 5.95862 6.24633 6.61562 6.72919 6.77766 7.05054 7.21411 7.46710 8.82356 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.019454 B = 0.004480 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.967310 B = 6249.021504 C = 6481.720656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.098 3.902 3 N -0.603 5.603 4 C 0.228 3.772 5 C -0.535 4.535 6 H 0.027 0.973 7 C 0.011 3.989 8 N -0.946 5.946 9 Si 0.948 3.052 10 H -0.249 1.249 11 H -0.282 1.282 12 H -0.258 1.258 13 C 0.499 3.501 14 O -0.576 6.576 15 C 0.043 3.957 16 N -0.507 5.507 17 C 0.016 3.984 18 C 0.098 3.902 19 H 0.071 0.929 20 O -0.572 6.572 21 C -0.100 4.100 22 C 0.061 3.939 23 H 0.084 0.916 24 C 0.090 3.910 25 O -0.581 6.581 26 H 0.047 0.953 27 H 0.057 0.943 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.073 0.927 31 H 0.046 0.954 32 H 0.016 0.984 33 H 0.268 0.732 34 H 0.112 0.888 35 H 0.088 0.912 36 H 0.050 0.950 37 H 0.060 0.940 38 H 0.393 0.607 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.044 0.956 42 H 0.079 0.921 43 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.731 -5.814 -17.933 23.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.025 4.025 3 N -0.335 5.335 4 C 0.106 3.894 5 C -0.574 4.574 6 H 0.045 0.955 7 C -0.187 4.187 8 N -0.586 5.586 9 Si 0.771 3.229 10 H -0.173 1.173 11 H -0.207 1.207 12 H -0.182 1.182 13 C 0.287 3.713 14 O -0.455 6.455 15 C -0.088 4.088 16 N -0.233 5.233 17 C -0.113 4.113 18 C 0.039 3.961 19 H 0.089 0.911 20 O -0.380 6.380 21 C -0.138 4.138 22 C -0.047 4.047 23 H 0.102 0.898 24 C 0.012 3.988 25 O -0.389 6.389 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.114 0.886 29 H 0.111 0.889 30 H 0.092 0.908 31 H 0.064 0.936 32 H 0.034 0.966 33 H 0.077 0.923 34 H 0.130 0.870 35 H 0.105 0.895 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.243 0.757 39 H 0.112 0.888 40 H 0.107 0.893 41 H 0.063 0.937 42 H 0.097 0.903 43 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -13.117 -4.990 -17.991 22.817 hybrid contribution -0.130 0.258 1.381 1.411 sum -13.247 -4.732 -16.610 21.766 Atomic orbital electron populations 1.22150 0.93967 1.03678 1.01907 1.21765 0.95596 0.81195 1.03894 1.48073 1.64537 1.15209 1.05722 1.19239 0.94642 0.92944 0.82587 1.21566 0.97148 1.32037 1.06635 0.95478 1.25857 0.96750 0.97128 0.98966 1.70057 1.17470 1.46599 1.24448 0.85704 0.79103 0.79124 0.78976 1.17344 1.20709 1.18229 1.21108 0.77250 0.86745 0.86202 1.90632 1.46641 1.20510 1.87757 1.22188 1.02936 0.95413 0.88235 1.64427 1.47238 1.10440 1.01164 1.23550 0.93424 0.96363 0.97952 1.22590 0.81994 0.99308 0.92238 0.91141 1.86461 1.15939 1.69374 1.66230 1.22398 0.98845 0.95179 0.97338 1.23065 0.96865 0.96446 0.88315 0.89799 1.22085 0.87119 0.89857 0.99736 1.86539 1.23729 1.36618 1.91980 0.93375 0.92426 0.88597 0.88869 0.90833 0.93608 0.96594 0.92278 0.86982 0.89476 0.93155 0.92147 0.75663 0.88763 0.89294 0.93748 0.90286 0.76113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.46 10.18 71.98 0.73 -2.73 16 2 C 0.10 2.85 5.85 86.38 0.50 3.36 16 3 N -0.60 -24.87 2.46 -826.15 -2.03 -26.90 16 4 C 0.23 11.40 4.23 85.63 0.36 11.76 16 5 C -0.54 -32.26 9.94 25.60 0.25 -32.01 16 6 H 0.03 1.83 8.06 -2.91 -0.02 1.80 16 7 C 0.01 0.65 5.47 84.66 0.46 1.12 16 8 N -0.95 -60.80 13.96 21.45 0.30 -60.50 16 9 Si 0.95 45.28 27.47 68.60 1.88 47.17 16 10 H -0.25 -10.82 7.11 99.48 0.71 -10.11 16 11 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 12 H -0.26 -11.97 6.54 99.48 0.65 -11.32 16 13 C 0.50 20.91 7.36 87.66 0.64 21.56 16 14 O -0.58 -30.24 14.61 -3.04 -0.04 -30.28 16 15 C 0.04 1.28 3.63 85.56 0.31 1.59 16 16 N -0.51 -15.30 4.66 -862.79 -4.02 -19.32 16 17 C 0.02 0.45 5.47 86.45 0.47 0.92 16 18 C 0.10 2.23 4.36 31.47 0.14 2.37 16 19 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 20 O -0.57 -11.24 13.25 -148.98 -1.97 -13.21 16 21 C -0.10 -2.14 6.17 31.80 0.20 -1.95 16 22 C 0.06 1.33 2.74 45.26 0.12 1.45 16 23 H 0.08 1.55 8.02 -2.38 -0.02 1.53 16 24 C 0.09 1.71 6.96 71.98 0.50 2.21 16 25 O -0.58 -13.41 12.36 -148.98 -1.84 -15.25 16 26 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.06 1.17 7.12 -2.39 -0.02 1.16 16 28 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 29 H 0.09 2.18 6.61 -2.39 -0.02 2.17 16 30 H 0.07 2.31 8.07 -2.39 -0.02 2.30 16 31 H 0.05 2.08 7.50 -2.39 -0.02 2.06 16 32 H 0.02 0.87 6.48 -2.39 -0.02 0.86 16 33 H 0.27 15.99 8.31 -92.70 -0.77 15.22 16 34 H 0.11 2.99 6.79 -2.39 -0.02 2.97 16 35 H 0.09 2.02 6.65 -2.39 -0.02 2.01 16 36 H 0.05 1.37 7.46 -2.38 -0.02 1.35 16 37 H 0.06 2.17 7.32 -2.39 -0.02 2.16 16 38 H 0.39 4.89 9.11 -74.06 -0.67 4.22 16 39 H 0.09 1.71 8.08 -2.39 -0.02 1.69 16 40 H 0.09 2.12 7.01 -2.39 -0.02 2.11 16 41 H 0.04 0.85 7.24 -2.38 -0.02 0.83 16 42 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.39 5.55 9.12 -74.06 -0.68 4.88 16 Total: -1.00 -84.79 343.39 -3.41 -88.20 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: -0.38 Total: 20.44 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: 4.70 Total: 9.66 kcal Atomic # 7 Polarization: -100.97 SS G_CDS: -5.75 Total: -106.72 kcal Atomic # 8 Polarization: -54.89 SS G_CDS: -3.86 Total: -58.75 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.88 Total: 47.17 kcal Total: -84.79 -3.41 -88.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000248387299.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.153 kcal (2) G-P(sol) polarization free energy of solvation -84.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds