Wall clock time and date at job start Tue Mar 31 2020 02:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.46497 * 119.99976 * 2 1 4 4 C 1.50708 * 109.47031 * 270.00208 * 3 2 1 5 5 H 1.08001 * 119.99716 * 359.97438 * 4 3 2 6 6 C 1.37877 * 119.99985 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99609 * 179.97438 * 6 4 3 8 8 Si 1.86799 * 120.00033 * 0.02562 * 6 4 3 9 9 H 1.48498 * 109.47397 * 89.99805 * 8 6 4 10 10 H 1.48502 * 109.46913 * 209.99829 * 8 6 4 11 11 H 1.48500 * 109.47231 * 329.99880 * 8 6 4 12 12 C 1.34777 * 119.99873 * 179.97438 * 2 1 3 13 13 O 1.21272 * 119.99977 * 179.97438 * 12 2 1 14 14 C 1.50704 * 119.99780 * 359.97438 * 12 2 1 15 15 C 1.53004 * 109.46628 * 179.97438 * 14 12 2 16 16 N 1.46905 * 109.46673 * 185.43453 * 15 14 12 17 17 C 1.47896 * 110.99839 * 65.29295 * 16 15 14 18 18 C 1.53994 * 107.05777 * 214.15077 * 17 16 15 19 19 H 1.08995 * 110.31096 * 242.31151 * 18 17 16 20 20 O 1.42905 * 110.30866 * 120.14165 * 18 17 16 21 21 C 1.54600 * 105.13966 * 1.22742 * 18 17 16 22 22 C 1.48533 * 111.00327 * 307.89166 * 16 15 14 23 23 H 1.09003 * 110.66175 * 41.28692 * 22 16 15 24 24 C 1.52998 * 110.66977 * 278.16019 * 22 16 15 25 25 O 1.42900 * 109.47054 * 294.99929 * 24 22 16 26 26 H 1.08997 * 109.46748 * 270.00317 * 1 2 3 27 27 H 1.09003 * 109.47097 * 29.99868 * 1 2 3 28 28 H 1.08994 * 109.47237 * 150.00381 * 1 2 3 29 29 H 1.09003 * 109.47397 * 29.99716 * 3 2 1 30 30 H 1.08995 * 109.47217 * 150.00113 * 3 2 1 31 31 H 0.97000 * 119.99313 * 179.97438 * 7 6 4 32 32 H 1.09003 * 109.46748 * 60.00218 * 14 12 2 33 33 H 1.09000 * 109.47251 * 299.99970 * 14 12 2 34 34 H 1.09000 * 109.47338 * 305.43711 * 15 14 12 35 35 H 1.09003 * 109.46683 * 65.43963 * 15 14 12 36 36 H 1.08998 * 109.91973 * 333.50175 * 17 16 15 37 37 H 1.09002 * 109.92082 * 94.80350 * 17 16 15 38 38 H 0.96697 * 114.00042 * 61.45720 * 20 18 17 39 39 H 1.08997 * 110.72746 * 140.31050 * 21 18 17 40 40 H 1.09002 * 110.72140 * 263.59976 * 21 18 17 41 41 H 1.08997 * 109.46846 * 54.99844 * 24 22 16 42 42 H 1.08997 * 109.46905 * 174.99789 * 24 22 16 43 43 H 0.96694 * 114.00293 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7038 -1.4209 5 1 2.0981 1.0957 -2.2417 6 6 3.1269 2.8774 -1.6729 7 7 3.3465 3.2568 -2.9128 8 14 3.7352 3.9280 -0.2531 9 1 5.1085 3.5057 0.1224 10 1 3.7510 5.3548 -0.6644 11 1 2.8295 3.7586 0.9116 12 6 2.1390 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0001 14 6 1.3854 -2.4723 0.0017 15 6 2.3796 -3.6352 0.0014 16 7 1.6497 -4.9034 -0.1286 17 6 0.9765 -4.9952 -1.4423 18 6 -0.3386 -5.7657 -1.2231 19 1 -0.3342 -6.6925 -1.7968 20 8 -1.4558 -4.9561 -1.5953 21 6 -0.3792 -6.0725 0.2916 22 6 0.5707 -5.0032 0.8872 23 1 0.0555 -4.0488 0.9962 24 6 1.1350 -5.4703 2.2305 25 8 1.6365 -6.8019 2.0993 26 1 -0.3633 0.0001 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5137 29 1 1.6085 2.0284 0.5138 30 1 3.1500 1.1384 0.5138 31 1 3.8233 4.0827 -3.0900 32 1 0.7584 -2.5306 -0.8881 33 1 0.7590 -2.5294 0.8919 34 1 3.0680 -3.5246 -0.8364 35 1 2.9411 -3.6333 0.9357 36 1 0.7625 -3.9956 -1.8205 37 1 1.6096 -5.5342 -2.1471 38 1 -1.4599 -4.6956 -2.5265 39 1 -1.3894 -5.9518 0.6827 40 1 -0.0042 -7.0762 0.4920 41 1 1.9435 -4.8060 2.5356 42 1 0.3460 -5.4515 2.9823 43 1 2.0109 -7.1633 2.9143 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000248393759.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:07 Heat of formation + Delta-G solvation = -116.207050 kcal Electronic energy + Delta-G solvation = -23826.978703 eV Core-core repulsion = 20293.816326 eV Total energy + Delta-G solvation = -3533.162377 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.20843 -38.86877 -36.86908 -35.93225 -34.94072 -32.72759 -32.30945 -30.08738 -29.31081 -27.90652 -25.93558 -25.33717 -23.73303 -22.11264 -21.06270 -19.82457 -18.43994 -17.94639 -17.38662 -16.97908 -16.68989 -15.72811 -15.46631 -15.34481 -14.99885 -14.66148 -14.27218 -14.08792 -13.60057 -13.48580 -13.33456 -12.88750 -12.63064 -12.42550 -12.29900 -12.07720 -11.95112 -11.81581 -11.50496 -11.41505 -11.14295 -10.95524 -10.92000 -10.60456 -10.53510 -10.23439 -10.16031 -10.04337 -9.56468 -9.05096 -8.60606 -8.43092 -7.72822 -6.10471 -4.09350 3.27883 3.30596 3.33893 3.35630 3.68487 3.86946 4.07758 4.11375 4.35882 4.38141 4.64715 4.80204 5.01951 5.06723 5.09440 5.11031 5.19019 5.24093 5.25970 5.33086 5.48112 5.55574 5.60473 5.68681 5.72147 5.80810 5.83255 5.91474 6.08254 6.14007 6.27982 6.66936 6.78924 6.89843 6.96001 7.31062 7.42140 7.52708 7.59186 8.21971 8.45134 8.90267 8.96161 9.49801 11.02989 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.025275 B = 0.003812 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.566710 B = 7343.369256 C = 7777.122606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.599 5.599 3 C 0.215 3.785 4 C -0.529 4.529 5 H 0.073 0.927 6 C 0.072 3.928 7 N -0.898 5.898 8 Si 0.877 3.123 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.510 3.490 13 O -0.541 6.541 14 C -0.178 4.178 15 C 0.060 3.940 16 N -0.495 5.495 17 C -0.004 4.004 18 C 0.091 3.909 19 H 0.066 0.934 20 O -0.567 6.567 21 C -0.106 4.106 22 C 0.053 3.947 23 H 0.077 0.923 24 C 0.092 3.908 25 O -0.558 6.558 26 H 0.044 0.956 27 H 0.076 0.924 28 H 0.059 0.941 29 H 0.029 0.971 30 H 0.036 0.964 31 H 0.265 0.735 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.062 0.938 37 H 0.084 0.916 38 H 0.379 0.621 39 H 0.078 0.922 40 H 0.098 0.902 41 H 0.049 0.951 42 H 0.047 0.953 43 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.015 -18.536 8.572 22.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.331 5.331 3 C 0.094 3.906 4 C -0.568 4.568 5 H 0.091 0.909 6 C -0.130 4.130 7 N -0.536 5.536 8 Si 0.704 3.296 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.191 1.191 12 C 0.296 3.704 13 O -0.418 6.418 14 C -0.220 4.220 15 C -0.068 4.068 16 N -0.218 5.218 17 C -0.132 4.132 18 C 0.032 3.968 19 H 0.084 0.916 20 O -0.372 6.372 21 C -0.144 4.144 22 C -0.055 4.055 23 H 0.094 0.906 24 C 0.013 3.987 25 O -0.363 6.363 26 H 0.063 0.937 27 H 0.094 0.906 28 H 0.078 0.922 29 H 0.047 0.953 30 H 0.054 0.946 31 H 0.075 0.925 32 H 0.109 0.891 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.102 0.898 36 H 0.080 0.920 37 H 0.103 0.897 38 H 0.227 0.773 39 H 0.096 0.904 40 H 0.116 0.884 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -9.253 -18.782 8.531 22.608 hybrid contribution 0.043 1.565 0.354 1.605 sum -9.209 -17.217 8.885 21.452 Atomic orbital electron populations 1.21651 0.80982 1.02976 1.00383 1.47871 1.06252 1.07218 1.71735 1.19664 0.92445 0.80105 0.98369 1.21323 1.37033 1.07167 0.91241 0.90864 1.24864 0.95206 0.97351 0.95613 1.69900 1.41462 1.23578 1.18664 0.86832 0.80132 0.79728 0.82879 1.19872 1.21031 1.19108 1.20223 0.88021 0.84948 0.77229 1.90669 1.13882 1.87248 1.50048 1.22393 1.00817 0.95072 1.03686 1.22139 0.95566 0.84599 1.04544 1.65042 1.22593 1.32663 1.01535 1.23747 0.95508 1.00574 0.93357 1.22677 0.84687 0.92641 0.96800 0.91588 1.86532 1.46406 1.72179 1.32130 1.22465 0.99252 1.00359 0.92324 1.23021 0.91850 0.98278 0.92369 0.90553 1.21973 0.97021 0.84213 0.95455 1.86538 1.81750 1.29378 1.38584 0.93729 0.90554 0.92225 0.95287 0.94566 0.92543 0.89101 0.89472 0.89351 0.89820 0.92036 0.89727 0.77313 0.90374 0.88383 0.93316 0.93475 0.78104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.31 10.24 59.85 0.61 1.92 16 2 N -0.60 -12.42 2.86 -182.95 -0.52 -12.94 16 3 C 0.21 5.32 4.23 -5.19 -0.02 5.29 16 4 C -0.53 -15.35 9.94 -34.44 -0.34 -15.70 16 5 H 0.07 2.33 8.06 -52.49 -0.42 1.91 16 6 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 7 N -0.90 -27.83 13.96 55.43 0.77 -27.06 16 8 Si 0.88 21.70 27.47 -169.99 -4.67 17.03 16 9 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 12 C 0.51 10.34 7.67 -10.98 -0.08 10.25 16 13 O -0.54 -13.26 15.49 5.56 0.09 -13.17 16 14 C -0.18 -2.60 3.40 -27.88 -0.09 -2.69 16 15 C 0.06 0.86 4.67 -3.82 -0.02 0.85 16 16 N -0.50 -6.14 5.20 -222.63 -1.16 -7.29 16 17 C 0.00 -0.04 6.27 -2.76 -0.02 -0.06 16 18 C 0.09 0.89 4.36 -25.37 -0.11 0.78 16 19 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 20 O -0.57 -5.58 13.25 -35.23 -0.47 -6.05 16 21 C -0.11 -1.07 6.18 -24.87 -0.15 -1.22 16 22 C 0.05 0.57 2.50 -65.79 -0.16 0.40 16 23 H 0.08 0.83 5.49 -51.93 -0.29 0.55 16 24 C 0.09 0.86 6.96 37.16 0.26 1.12 16 25 O -0.56 -5.35 12.36 -35.23 -0.44 -5.78 16 26 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 28 H 0.06 0.79 6.44 -51.93 -0.33 0.45 16 29 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 30 H 0.04 0.96 6.85 -51.93 -0.36 0.60 16 31 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 32 H 0.09 1.26 5.38 -51.93 -0.28 0.98 16 33 H 0.09 1.09 6.23 -51.93 -0.32 0.77 16 34 H 0.09 1.44 7.93 -51.93 -0.41 1.03 16 35 H 0.08 1.24 7.51 -51.93 -0.39 0.85 16 36 H 0.06 0.71 5.62 -51.93 -0.29 0.42 16 37 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.38 2.38 9.11 45.56 0.41 2.80 16 39 H 0.08 0.75 8.08 -51.93 -0.42 0.34 16 40 H 0.10 1.01 7.00 -51.93 -0.36 0.65 16 41 H 0.05 0.48 7.45 -51.93 -0.39 0.09 16 42 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.37 1.95 9.12 45.56 0.42 2.37 16 LS Contribution 339.56 15.07 5.12 5.12 Total: -1.00 -36.34 339.56 -6.59 -42.93 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -5.08 Total: 4.25 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: -0.23 Total: 2.97 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: -0.91 Total: -47.29 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: -0.82 Total: -25.00 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -36.34 -6.59 -42.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000248393759.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.279 kcal (2) G-P(sol) polarization free energy of solvation -36.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds