Wall clock time and date at job start Tue Mar 31 2020 02:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.46497 * 119.99976 * 2 1 4 4 C 1.50708 * 109.47031 * 270.00208 * 3 2 1 5 5 H 1.08001 * 119.99716 * 359.97438 * 4 3 2 6 6 C 1.37877 * 119.99985 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99609 * 179.97438 * 6 4 3 8 8 Si 1.86799 * 120.00033 * 0.02562 * 6 4 3 9 9 H 1.48498 * 109.47397 * 89.99805 * 8 6 4 10 10 H 1.48502 * 109.46913 * 209.99829 * 8 6 4 11 11 H 1.48500 * 109.47231 * 329.99880 * 8 6 4 12 12 C 1.34777 * 119.99873 * 179.97438 * 2 1 3 13 13 O 1.21272 * 119.99977 * 179.97438 * 12 2 1 14 14 C 1.50704 * 119.99780 * 359.97438 * 12 2 1 15 15 C 1.53004 * 109.46628 * 179.97438 * 14 12 2 16 16 N 1.46905 * 109.46673 * 185.43453 * 15 14 12 17 17 C 1.47896 * 110.99839 * 65.29295 * 16 15 14 18 18 C 1.53994 * 107.05777 * 214.15077 * 17 16 15 19 19 H 1.08995 * 110.31096 * 242.31151 * 18 17 16 20 20 O 1.42905 * 110.30866 * 120.14165 * 18 17 16 21 21 C 1.54600 * 105.13966 * 1.22742 * 18 17 16 22 22 C 1.48533 * 111.00327 * 307.89166 * 16 15 14 23 23 H 1.09003 * 110.66175 * 41.28692 * 22 16 15 24 24 C 1.52998 * 110.66977 * 278.16019 * 22 16 15 25 25 O 1.42900 * 109.47054 * 294.99929 * 24 22 16 26 26 H 1.08997 * 109.46748 * 270.00317 * 1 2 3 27 27 H 1.09003 * 109.47097 * 29.99868 * 1 2 3 28 28 H 1.08994 * 109.47237 * 150.00381 * 1 2 3 29 29 H 1.09003 * 109.47397 * 29.99716 * 3 2 1 30 30 H 1.08995 * 109.47217 * 150.00113 * 3 2 1 31 31 H 0.97000 * 119.99313 * 179.97438 * 7 6 4 32 32 H 1.09003 * 109.46748 * 60.00218 * 14 12 2 33 33 H 1.09000 * 109.47251 * 299.99970 * 14 12 2 34 34 H 1.09000 * 109.47338 * 305.43711 * 15 14 12 35 35 H 1.09003 * 109.46683 * 65.43963 * 15 14 12 36 36 H 1.08998 * 109.91973 * 333.50175 * 17 16 15 37 37 H 1.09002 * 109.92082 * 94.80350 * 17 16 15 38 38 H 0.96697 * 114.00042 * 61.45720 * 20 18 17 39 39 H 1.08997 * 110.72746 * 140.31050 * 21 18 17 40 40 H 1.09002 * 110.72140 * 263.59976 * 21 18 17 41 41 H 1.08997 * 109.46846 * 54.99844 * 24 22 16 42 42 H 1.08997 * 109.46905 * 174.99789 * 24 22 16 43 43 H 0.96694 * 114.00293 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7038 -1.4209 5 1 2.0981 1.0957 -2.2417 6 6 3.1269 2.8774 -1.6729 7 7 3.3465 3.2568 -2.9128 8 14 3.7352 3.9280 -0.2531 9 1 5.1085 3.5057 0.1224 10 1 3.7510 5.3548 -0.6644 11 1 2.8295 3.7586 0.9116 12 6 2.1390 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0001 14 6 1.3854 -2.4723 0.0017 15 6 2.3796 -3.6352 0.0014 16 7 1.6497 -4.9034 -0.1286 17 6 0.9765 -4.9952 -1.4423 18 6 -0.3386 -5.7657 -1.2231 19 1 -0.3342 -6.6925 -1.7968 20 8 -1.4558 -4.9561 -1.5953 21 6 -0.3792 -6.0725 0.2916 22 6 0.5707 -5.0032 0.8872 23 1 0.0555 -4.0488 0.9962 24 6 1.1350 -5.4703 2.2305 25 8 1.6365 -6.8019 2.0993 26 1 -0.3633 0.0001 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5137 29 1 1.6085 2.0284 0.5138 30 1 3.1500 1.1384 0.5138 31 1 3.8233 4.0827 -3.0900 32 1 0.7584 -2.5306 -0.8881 33 1 0.7590 -2.5294 0.8919 34 1 3.0680 -3.5246 -0.8364 35 1 2.9411 -3.6333 0.9357 36 1 0.7625 -3.9956 -1.8205 37 1 1.6096 -5.5342 -2.1471 38 1 -1.4599 -4.6956 -2.5265 39 1 -1.3894 -5.9518 0.6827 40 1 -0.0042 -7.0762 0.4920 41 1 1.9435 -4.8060 2.5356 42 1 0.3460 -5.4515 2.9823 43 1 2.0109 -7.1633 2.9143 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000248393759.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:07 Heat of formation + Delta-G solvation = -149.370143 kcal Electronic energy + Delta-G solvation = -23828.416763 eV Core-core repulsion = 20293.816326 eV Total energy + Delta-G solvation = -3534.600437 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.29754 -40.25568 -37.57501 -36.89037 -36.55468 -34.74653 -33.49267 -31.17578 -30.62005 -29.31516 -27.37894 -26.24880 -25.06787 -23.73456 -21.87564 -20.94516 -19.79285 -19.17861 -18.82456 -18.11570 -17.99039 -17.16044 -16.82224 -16.58045 -16.10940 -15.83614 -15.63937 -15.04290 -14.83109 -14.73034 -14.39920 -14.14438 -13.91043 -13.83362 -13.72096 -13.65267 -13.29047 -12.98041 -12.87564 -12.65745 -12.44487 -12.33188 -12.06304 -11.92510 -11.84031 -11.77238 -11.55173 -10.97450 -10.85706 -10.73470 -10.71105 -9.43892 -9.39288 -8.36619 -6.42159 1.31177 1.35508 1.43906 1.73083 2.27611 2.29380 2.85483 2.97923 3.37082 3.39685 3.53858 3.75146 3.85499 3.90990 3.97287 4.05259 4.22988 4.30154 4.41470 4.47020 4.54654 4.61295 4.64167 4.69145 4.78036 4.79658 4.87557 4.92705 4.94604 4.95078 5.02968 5.13866 5.29338 5.42901 5.57315 5.87343 5.96833 6.20433 6.58780 6.64630 6.84629 7.04695 7.18335 7.37015 8.80462 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.025275 B = 0.003812 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.566710 B = 7343.369256 C = 7777.122606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.608 5.608 3 C 0.222 3.778 4 C -0.539 4.539 5 H 0.027 0.973 6 C 0.011 3.989 7 N -0.945 5.945 8 Si 0.950 3.050 9 H -0.276 1.276 10 H -0.274 1.274 11 H -0.237 1.237 12 C 0.500 3.500 13 O -0.594 6.594 14 C -0.157 4.157 15 C 0.070 3.930 16 N -0.501 5.501 17 C -0.007 4.007 18 C 0.097 3.903 19 H 0.079 0.921 20 O -0.577 6.577 21 C -0.102 4.102 22 C 0.047 3.953 23 H 0.080 0.920 24 C 0.092 3.908 25 O -0.576 6.576 26 H 0.081 0.919 27 H 0.066 0.934 28 H 0.084 0.916 29 H 0.051 0.949 30 H 0.019 0.981 31 H 0.269 0.731 32 H 0.103 0.897 33 H 0.118 0.882 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.055 0.945 37 H 0.084 0.916 38 H 0.394 0.606 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.041 0.959 42 H 0.071 0.929 43 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.853 -19.149 10.724 24.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.339 5.339 3 C 0.100 3.900 4 C -0.577 4.577 5 H 0.045 0.955 6 C -0.187 4.187 7 N -0.585 5.585 8 Si 0.772 3.228 9 H -0.202 1.202 10 H -0.199 1.199 11 H -0.160 1.160 12 C 0.288 3.712 13 O -0.475 6.475 14 C -0.198 4.198 15 C -0.059 4.059 16 N -0.225 5.225 17 C -0.135 4.135 18 C 0.038 3.962 19 H 0.097 0.903 20 O -0.385 6.385 21 C -0.140 4.140 22 C -0.060 4.060 23 H 0.097 0.903 24 C 0.014 3.986 25 O -0.383 6.383 26 H 0.099 0.901 27 H 0.085 0.915 28 H 0.103 0.897 29 H 0.069 0.931 30 H 0.037 0.963 31 H 0.078 0.922 32 H 0.121 0.879 33 H 0.136 0.864 34 H 0.078 0.922 35 H 0.094 0.906 36 H 0.073 0.927 37 H 0.102 0.898 38 H 0.244 0.756 39 H 0.103 0.897 40 H 0.113 0.887 41 H 0.059 0.941 42 H 0.089 0.911 43 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -11.152 -19.424 10.692 24.819 hybrid contribution 0.584 1.665 -0.412 1.812 sum -10.568 -17.758 10.280 23.081 Atomic orbital electron populations 1.21950 0.77656 1.03830 1.02958 1.48006 1.08421 1.06053 1.71427 1.19346 0.92763 0.82594 0.95313 1.21559 1.36965 1.06806 0.92373 0.95506 1.25876 0.95216 0.98944 0.98705 1.70052 1.42644 1.24512 1.21328 0.85688 0.79556 0.77746 0.79791 1.20188 1.19881 1.16050 1.21207 0.87778 0.86466 0.75726 1.90637 1.16426 1.88127 1.52298 1.22305 1.00465 0.91460 1.05573 1.21912 0.95396 0.85649 1.02952 1.65063 1.23748 1.30892 1.02760 1.23816 0.96368 1.00535 0.92768 1.22632 0.83782 0.92839 0.96991 0.90279 1.86491 1.46167 1.72240 1.33650 1.22430 0.99307 0.99867 0.92375 1.23165 0.91468 0.98787 0.92604 0.90273 1.21985 0.97458 0.84025 0.95156 1.86484 1.82045 1.29431 1.40342 0.90107 0.91512 0.89705 0.93115 0.96318 0.92213 0.87937 0.86366 0.92171 0.90564 0.92656 0.89754 0.75633 0.89650 0.88712 0.94108 0.91136 0.76041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.22 10.24 127.77 1.31 3.53 16 2 N -0.61 -24.70 2.86 -851.12 -2.43 -27.13 16 3 C 0.22 10.92 4.23 85.64 0.36 11.28 16 4 C -0.54 -32.06 9.94 25.60 0.25 -31.81 16 5 H 0.03 1.78 8.06 -2.91 -0.02 1.76 16 6 C 0.01 0.63 5.47 84.65 0.46 1.09 16 7 N -0.95 -60.21 13.96 21.45 0.30 -59.91 16 8 Si 0.95 44.65 27.47 68.60 1.88 46.54 16 9 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 10 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 11 H -0.24 -9.97 6.54 99.48 0.65 -9.32 16 12 C 0.50 20.20 7.67 87.66 0.67 20.87 16 13 O -0.59 -29.96 15.49 -3.00 -0.05 -30.01 16 14 C -0.16 -4.34 3.40 29.85 0.10 -4.24 16 15 C 0.07 2.00 4.67 86.30 0.40 2.40 16 16 N -0.50 -11.84 5.20 -858.26 -4.46 -16.30 16 17 C -0.01 -0.14 6.27 86.45 0.54 0.40 16 18 C 0.10 1.67 4.36 31.47 0.14 1.81 16 19 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 20 O -0.58 -9.87 13.25 -148.98 -1.97 -11.84 16 21 C -0.10 -1.79 6.18 31.80 0.20 -1.59 16 22 C 0.05 0.91 2.50 45.26 0.11 1.02 16 23 H 0.08 1.46 5.49 -2.39 -0.01 1.44 16 24 C 0.09 1.52 6.96 71.98 0.50 2.02 16 25 O -0.58 -9.90 12.36 -148.98 -1.84 -11.74 16 26 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.07 2.04 8.07 -2.39 -0.02 2.02 16 28 H 0.08 1.97 6.44 -2.39 -0.02 1.96 16 29 H 0.05 2.27 7.13 -2.39 -0.02 2.25 16 30 H 0.02 0.99 6.85 -2.39 -0.02 0.97 16 31 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 32 H 0.10 2.64 5.38 -2.39 -0.01 2.63 16 33 H 0.12 2.57 6.23 -2.39 -0.01 2.56 16 34 H 0.06 2.04 7.93 -2.39 -0.02 2.02 16 35 H 0.08 2.27 7.51 -2.39 -0.02 2.25 16 36 H 0.06 1.22 5.62 -2.39 -0.01 1.20 16 37 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.39 4.05 9.11 -74.06 -0.67 3.37 16 39 H 0.08 1.39 8.08 -2.39 -0.02 1.37 16 40 H 0.09 1.74 7.00 -2.39 -0.02 1.72 16 41 H 0.04 0.73 7.45 -2.39 -0.02 0.71 16 42 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.39 3.33 9.12 -74.06 -0.68 2.66 16 Total: -1.00 -81.56 339.56 -3.89 -85.45 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: -0.37 Total: 18.15 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: 5.05 Total: 6.79 kcal Atomic # 7 Polarization: -96.74 SS G_CDS: -6.60 Total: -103.34 kcal Atomic # 8 Polarization: -49.73 SS G_CDS: -3.86 Total: -53.60 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.88 Total: 46.54 kcal Total: -81.56 -3.89 -85.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000248393759.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.916 kcal (2) G-P(sol) polarization free energy of solvation -81.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds