Wall clock time and date at job start Tue Mar 31 2020 03:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29412 * 125.69547 * 2 1 4 4 N 1.26395 * 116.47319 * 180.26378 * 3 2 1 5 5 C 1.29412 * 116.47584 * 359.97438 * 4 3 2 6 6 C 1.50708 * 125.69287 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.46995 * 89.95583 * 6 5 4 8 8 N 1.46500 * 109.46996 * 179.97438 * 7 6 5 9 9 C 1.34773 * 120.00068 * 179.97438 * 8 7 6 10 10 O 1.21277 * 120.00082 * 0.02562 * 9 8 7 11 11 C 1.50702 * 120.00064 * 180.02562 * 9 8 7 12 12 S 1.80995 * 109.47229 * 180.02562 * 11 9 8 13 13 C 1.76198 * 100.00153 * 180.02562 * 12 11 9 14 14 H 1.08005 * 119.99991 * 359.97438 * 13 12 11 15 15 C 1.38799 * 120.00180 * 180.02562 * 13 12 11 16 16 N 1.31627 * 119.99966 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99997 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47229 * 359.97438 * 17 15 13 19 19 H 1.48492 * 109.47116 * 119.99467 * 17 15 13 20 20 H 1.48501 * 109.46703 * 239.99638 * 17 15 13 21 21 S 1.71211 * 108.60984 * 359.97438 * 5 4 3 22 22 H 1.09005 * 109.46931 * 269.69686 * 1 2 3 23 23 H 1.08996 * 109.47023 * 29.69154 * 1 2 3 24 24 H 1.08998 * 109.47204 * 149.69796 * 1 2 3 25 25 H 1.09000 * 109.46642 * 209.95794 * 6 5 4 26 26 H 1.08998 * 109.47098 * 329.95816 * 6 5 4 27 27 H 1.08991 * 109.47131 * 299.99953 * 7 6 5 28 28 H 1.09006 * 109.46733 * 60.00131 * 7 6 5 29 29 H 0.97009 * 119.99770 * 0.02562 * 8 7 6 30 30 H 1.09000 * 109.46908 * 300.00497 * 11 9 8 31 31 H 1.09003 * 109.46752 * 60.00040 * 11 9 8 32 32 H 0.97004 * 119.99892 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2621 1.0510 0.0000 4 7 3.5097 0.8484 -0.0052 5 6 3.8936 -0.3875 -0.0094 6 6 5.3233 -0.8641 -0.0154 7 6 5.8123 -1.0278 1.4251 8 7 7.2019 -1.4918 1.4193 9 6 7.8455 -1.7064 2.5837 10 8 7.2742 -1.5160 3.6364 11 6 9.2751 -2.1832 2.5778 12 16 9.8536 -2.3769 4.2818 13 6 11.5015 -2.9255 3.9850 14 1 11.8572 -3.0437 2.9720 15 6 12.3423 -3.2067 5.0529 16 7 11.9088 -3.0632 6.2874 17 14 14.0896 -3.7876 4.7382 18 1 14.3293 -3.8659 3.2747 19 1 15.0470 -2.8291 5.3463 20 1 14.2814 -5.1301 5.3433 21 16 2.5060 -1.3905 -0.0057 22 1 -0.3633 -0.0054 1.0277 23 1 -0.3633 0.8927 -0.5090 24 1 -0.3633 -0.8872 -0.5185 25 1 5.3845 -1.8225 -0.5311 26 1 5.9476 -0.1339 -0.5303 27 1 5.7510 -0.0695 1.9407 28 1 5.1879 -1.7581 1.9399 29 1 7.6589 -1.6437 0.5772 30 1 9.3363 -3.1417 2.0624 31 1 9.8994 -1.4531 2.0625 32 1 12.4966 -3.2594 7.0338 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291151150.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:33 Heat of formation + Delta-G solvation = -12.382301 kcal Electronic energy + Delta-G solvation = -16731.272583 eV Core-core repulsion = 13751.026027 eV Total energy + Delta-G solvation = -2980.246556 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 287.050 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.38746 -40.64120 -36.88470 -34.59389 -34.53921 -32.67353 -30.79877 -28.71126 -27.65416 -26.16327 -24.08167 -21.95071 -20.77297 -20.37115 -19.80811 -17.85480 -17.55362 -16.87468 -16.82070 -16.71368 -16.26442 -15.73127 -15.47541 -14.78148 -14.61363 -14.33133 -14.26887 -14.03147 -13.58468 -13.33099 -13.19042 -13.14958 -12.91323 -12.62831 -12.58348 -11.70987 -11.52924 -11.20021 -11.15200 -11.04771 -10.71546 -10.63871 -10.25813 -10.20121 -8.66135 -8.34042 -6.12025 -0.62366 -0.11585 0.29904 1.26638 1.42382 1.42520 1.49709 1.58988 1.59580 2.19703 2.28424 2.99262 3.00382 3.32800 3.56013 3.69833 3.83947 4.01988 4.07309 4.19377 4.33553 4.49904 4.53746 4.60374 4.69109 4.81760 4.86564 5.05939 5.32638 5.43415 6.21093 6.47840 7.07553 7.22202 7.48717 8.75419 Molecular weight = 287.05amu Principal moments of inertia in cm(-1) A = 0.061369 B = 0.002397 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.149611 B =11680.760730 C =11810.644362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.025 4.025 3 N -0.307 5.307 4 N -0.293 5.293 5 C -0.030 4.030 6 C -0.041 4.041 7 C 0.131 3.869 8 N -0.709 5.709 9 C 0.534 3.466 10 O -0.567 6.567 11 C -0.128 4.128 12 S -0.157 6.157 13 C -0.543 4.543 14 H 0.085 0.915 15 C 0.011 3.989 16 N -0.912 5.912 17 Si 1.000 3.000 18 H -0.255 1.255 19 H -0.276 1.276 20 H -0.274 1.274 21 S 0.234 5.766 22 H 0.104 0.896 23 H 0.096 0.904 24 H 0.112 0.888 25 H 0.133 0.867 26 H 0.117 0.883 27 H 0.049 0.951 28 H 0.066 0.934 29 H 0.422 0.578 30 H 0.116 0.884 31 H 0.112 0.888 32 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.190 0.187 -19.912 28.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.303 4.303 3 N -0.145 5.145 4 N -0.130 5.130 5 C -0.310 4.310 6 C -0.082 4.082 7 C 0.005 3.995 8 N -0.364 5.364 9 C 0.320 3.680 10 O -0.445 6.445 11 C -0.279 4.279 12 S 0.070 5.930 13 C -0.691 4.691 14 H 0.103 0.897 15 C -0.194 4.194 16 N -0.549 5.549 17 Si 0.822 3.178 18 H -0.179 1.179 19 H -0.201 1.201 20 H -0.200 1.200 21 S 0.478 5.522 22 H 0.122 0.878 23 H 0.115 0.885 24 H 0.131 0.869 25 H 0.151 0.849 26 H 0.135 0.865 27 H 0.068 0.932 28 H 0.084 0.916 29 H 0.260 0.740 30 H 0.134 0.866 31 H 0.130 0.870 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -21.091 0.862 -18.027 27.759 hybrid contribution 1.834 -0.121 -1.063 2.123 sum -19.257 0.741 -19.090 27.125 Atomic orbital electron populations 1.20649 0.81260 1.06190 1.05678 1.29946 1.06169 0.92002 1.02190 1.71425 0.97202 1.28685 1.17188 1.71395 1.07256 1.18869 1.15473 1.29163 1.04272 0.92736 1.04790 1.20372 0.86170 1.05182 0.96470 1.21178 0.82178 0.99637 0.96543 1.45566 1.13546 1.68819 1.08460 1.20117 0.87705 0.76377 0.83799 1.90706 1.68738 1.52122 1.32962 1.23363 0.95428 1.05927 1.03178 1.85639 1.14531 1.87919 1.04909 1.23238 0.97839 1.51812 0.96189 0.89692 1.26153 1.04201 0.94981 0.94032 1.70196 1.38312 1.47067 0.99315 0.84887 0.76019 0.77785 0.79141 1.17861 1.20115 1.19967 1.83509 0.95480 1.09511 1.63685 0.87784 0.88515 0.86924 0.84862 0.86472 0.93225 0.91582 0.73961 0.86594 0.86968 0.92044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.48 71.24 0.75 0.20 16 2 C -0.02 -0.39 7.53 88.47 0.67 0.27 16 3 N -0.31 -7.46 11.66 -50.85 -0.59 -8.05 16 4 N -0.29 -7.40 11.66 -50.85 -0.59 -7.99 16 5 C -0.03 -0.54 6.78 88.47 0.60 0.06 16 6 C -0.04 -0.54 5.93 29.85 0.18 -0.36 16 7 C 0.13 2.77 5.66 86.38 0.49 3.26 16 8 N -0.71 -16.12 5.56 -463.07 -2.57 -18.69 16 9 C 0.53 19.02 7.85 87.66 0.69 19.71 16 10 O -0.57 -26.21 15.86 -3.02 -0.05 -26.25 16 11 C -0.13 -4.85 6.16 71.24 0.44 -4.42 16 12 S -0.16 -8.66 20.57 -56.49 -1.16 -9.82 16 13 C -0.54 -30.65 9.50 67.95 0.65 -30.01 16 14 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 15 C 0.01 0.62 5.49 84.86 0.47 1.08 16 16 N -0.91 -56.02 13.22 21.65 0.29 -55.73 16 17 Si 1.00 43.29 29.55 68.60 2.03 45.32 16 18 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 19 H -0.28 -11.65 7.11 99.48 0.71 -10.95 16 20 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 21 S 0.23 2.94 23.04 -56.49 -1.30 1.64 16 22 H 0.10 0.54 8.14 -2.38 -0.02 0.52 16 23 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 24 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 25 H 0.13 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.12 1.38 8.14 -2.39 -0.02 1.37 16 27 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 29 H 0.42 5.96 8.47 -92.70 -0.79 5.17 16 30 H 0.12 3.84 8.14 -2.40 -0.02 3.82 16 31 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 32 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -84.30 315.69 1.33 -82.97 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: 0.37 Total: 6.82 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: 4.92 Total: -10.21 kcal Atomic # 7 Polarization: -86.99 SS G_CDS: -3.47 Total: -90.46 kcal Atomic # 8 Polarization: -26.21 SS G_CDS: -0.05 Total: -26.25 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Atomic # 16 Polarization: -5.72 SS G_CDS: -2.46 Total: -8.18 kcal Total: -84.30 1.33 -82.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291151150.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.587 kcal (2) G-P(sol) polarization free energy of solvation -84.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds