Wall clock time and date at job start Tue Mar 31 2020 03:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52991 * 109.47519 * 2 1 4 4 C 1.53008 * 109.46977 * 120.00303 * 2 1 3 5 5 N 1.46899 * 109.46585 * 185.44391 * 4 2 1 6 6 C 1.47012 * 110.99981 * 285.96885 * 5 4 2 7 7 C 1.53096 * 109.25871 * 177.61266 * 6 5 4 8 8 O 1.43016 * 109.26234 * 56.85020 * 7 6 5 9 9 C 1.43019 * 113.73430 * 301.33236 * 8 7 6 10 10 C 1.47012 * 110.99607 * 162.34115 * 5 4 2 11 11 N 1.46901 * 109.46678 * 239.99606 * 2 1 3 12 12 C 1.46899 * 111.00146 * 60.00377 * 11 2 1 13 13 C 1.52993 * 109.47548 * 179.97438 * 12 11 2 14 14 O 1.42904 * 109.46868 * 64.99780 * 13 12 11 15 15 C 1.42904 * 113.99894 * 179.97438 * 14 13 12 16 16 C 1.50700 * 109.46823 * 180.02562 * 15 14 13 17 17 H 1.07995 * 120.00148 * 0.02562 * 16 15 14 18 18 C 1.37878 * 119.99631 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99994 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99897 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.46730 * 90.00626 * 20 18 16 22 22 H 1.48494 * 109.46932 * 210.00488 * 20 18 16 23 23 H 1.48498 * 109.47048 * 330.00437 * 20 18 16 24 24 H 1.08996 * 109.46845 * 299.99958 * 1 2 3 25 25 H 1.08993 * 109.47051 * 60.00244 * 1 2 3 26 26 H 1.09000 * 109.47069 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47632 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.46856 * 300.00364 * 3 2 1 29 29 H 1.09000 * 109.47281 * 59.99435 * 3 2 1 30 30 H 1.08993 * 109.47103 * 65.44482 * 4 2 1 31 31 H 1.09000 * 109.46851 * 305.43915 * 4 2 1 32 32 H 1.09005 * 109.51110 * 297.54945 * 6 5 4 33 33 H 1.09003 * 109.50704 * 57.67830 * 6 5 4 34 34 H 1.09001 * 109.50254 * 296.91404 * 7 6 5 35 35 H 1.08999 * 109.54182 * 176.80719 * 7 6 5 36 36 H 1.08997 * 109.50943 * 298.73361 * 9 8 7 37 37 H 1.09002 * 109.53793 * 178.62197 * 9 8 7 38 38 H 1.09006 * 109.50680 * 302.31843 * 10 5 4 39 39 H 1.08996 * 109.51486 * 62.40978 * 10 5 4 40 40 H 1.00899 * 111.00519 * 296.04862 * 11 2 1 41 41 H 1.09002 * 109.46818 * 300.00168 * 12 11 2 42 42 H 1.09004 * 109.46802 * 59.99211 * 12 11 2 43 43 H 1.08999 * 109.47438 * 184.99651 * 13 12 11 44 44 H 1.09001 * 109.47063 * 305.00561 * 13 12 11 45 45 H 1.09000 * 109.47149 * 300.00255 * 15 14 13 46 46 H 1.09000 * 109.47084 * 60.00118 * 15 14 13 47 47 H 0.96999 * 119.99532 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 1.2493 5 7 3.5031 -0.6086 1.3167 6 6 4.1453 -1.4857 0.3270 7 6 5.6628 -1.2930 0.3908 8 8 6.1162 -1.5552 1.7216 9 6 5.5115 -0.7182 2.7111 10 6 3.9925 -0.9052 2.6709 11 7 2.0196 -0.6926 -1.1994 12 6 1.5486 -0.0265 -2.4211 13 6 2.0780 -0.7744 -3.6463 14 8 1.5094 -2.0848 -3.6869 15 6 1.9405 -2.8712 -4.7995 16 6 1.2818 -4.2254 -4.7426 17 1 0.6017 -4.4618 -3.9376 18 6 1.5466 -5.1624 -5.7188 19 7 2.3744 -4.8744 -6.6994 20 14 0.7296 -6.8408 -5.6488 21 1 -0.5565 -6.7965 -6.3898 22 1 1.6231 -7.8524 -6.2679 23 1 0.4728 -7.2076 -4.2329 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1301 1.4424 -0.0005 28 1 1.6767 1.9562 -0.8900 29 1 1.6768 1.9563 0.8899 30 1 1.7585 -1.7732 1.2018 31 1 1.5993 -0.2669 2.1366 32 1 3.9008 -2.5247 0.5484 33 1 3.7878 -1.2317 -0.6708 34 1 5.9112 -0.2676 0.1170 35 1 6.1472 -1.9820 -0.3011 36 1 5.7555 0.3239 2.5049 37 1 5.8858 -0.9913 3.6977 38 1 3.5234 -0.2273 3.3841 39 1 3.7449 -1.9345 2.9301 40 1 1.7501 -1.6649 -1.1909 41 1 0.4587 -0.0266 -2.4378 42 1 1.9121 1.0010 -2.4378 43 1 1.8034 -0.2310 -4.5504 44 1 3.1636 -0.8512 -3.5840 45 1 1.6627 -2.3711 -5.7273 46 1 3.0231 -2.9915 -4.7617 47 1 2.5610 -5.5337 -7.3859 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308649323.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:05:55 Heat of formation + Delta-G solvation = -84.942778 kcal Electronic energy + Delta-G solvation = -24164.729193 eV Core-core repulsion = 20768.755631 eV Total energy + Delta-G solvation = -3395.973562 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 286.204 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.82693 -38.26923 -36.64196 -34.96569 -32.83512 -31.68943 -31.10107 -28.12148 -27.95774 -27.29266 -26.53226 -24.32503 -23.88621 -22.35466 -21.43298 -20.27728 -19.17123 -16.63854 -16.44906 -16.12388 -15.77663 -15.69067 -15.36591 -15.04064 -14.91567 -14.61137 -14.39695 -14.08139 -13.84403 -13.54248 -13.05543 -12.80858 -12.57832 -12.42326 -12.00833 -11.93937 -11.73940 -11.54720 -11.34574 -11.18929 -11.12048 -11.05830 -10.88429 -10.71987 -10.61234 -10.57514 -10.42367 -10.01260 -9.64065 -9.11864 -8.83585 -8.36460 -8.18194 -7.99829 -6.12144 -4.13993 3.28864 3.34167 3.38972 3.73761 3.93367 4.26505 4.33728 4.72827 4.87773 4.91704 5.00465 5.03875 5.12765 5.18417 5.24476 5.27852 5.35362 5.45188 5.47307 5.56403 5.58151 5.63364 5.68095 5.71609 5.78810 5.81098 5.89591 5.99707 6.07109 6.10129 6.15188 6.21879 6.37736 6.44977 6.48216 7.01332 7.03084 7.10255 7.18259 7.28156 7.42813 7.61482 7.77500 8.14183 8.56636 8.99070 9.51023 10.99314 Molecular weight = 286.20amu Principal moments of inertia in cm(-1) A = 0.015956 B = 0.003874 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.415995 B = 7226.406528 C = 8044.553374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.113 3.887 3 C -0.126 4.126 4 C 0.070 3.930 5 N -0.523 5.523 6 C -0.003 4.003 7 C 0.064 3.936 8 O -0.392 6.392 9 C 0.067 3.933 10 C 0.014 3.986 11 N -0.669 5.669 12 C 0.059 3.941 13 C 0.062 3.938 14 O -0.399 6.399 15 C 0.198 3.802 16 C -0.515 4.515 17 H 0.065 0.935 18 C 0.057 3.943 19 N -0.898 5.898 20 Si 0.906 3.094 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.272 1.272 24 H 0.056 0.944 25 H 0.063 0.937 26 H 0.056 0.944 27 H 0.075 0.925 28 H 0.047 0.953 29 H 0.048 0.952 30 H 0.036 0.964 31 H 0.073 0.927 32 H 0.032 0.968 33 H 0.143 0.857 34 H 0.055 0.945 35 H 0.096 0.904 36 H 0.056 0.944 37 H 0.091 0.909 38 H 0.078 0.922 39 H 0.037 0.963 40 H 0.353 0.647 41 H 0.038 0.962 42 H 0.079 0.921 43 H 0.039 0.961 44 H 0.045 0.955 45 H 0.003 0.997 46 H 0.006 0.994 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.851 12.549 17.307 21.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.021 3.979 3 C -0.184 4.184 4 C -0.059 4.059 5 N -0.247 5.247 6 C -0.131 4.131 7 C -0.013 4.013 8 O -0.310 6.310 9 C -0.010 4.010 10 C -0.114 4.114 11 N -0.301 5.301 12 C -0.070 4.070 13 C -0.016 4.016 14 O -0.319 6.319 15 C 0.124 3.876 16 C -0.553 4.553 17 H 0.083 0.917 18 C -0.144 4.144 19 N -0.537 5.537 20 Si 0.734 3.266 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.197 1.197 24 H 0.075 0.925 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.094 0.906 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.054 0.946 31 H 0.091 0.909 32 H 0.051 0.949 33 H 0.160 0.840 34 H 0.074 0.926 35 H 0.114 0.886 36 H 0.074 0.926 37 H 0.109 0.891 38 H 0.097 0.903 39 H 0.056 0.944 40 H 0.172 0.828 41 H 0.057 0.943 42 H 0.097 0.903 43 H 0.057 0.943 44 H 0.063 0.937 45 H 0.021 0.979 46 H 0.024 0.976 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.682 13.057 17.203 21.763 hybrid contribution -1.628 -1.756 -0.167 2.400 sum 1.054 11.301 17.036 20.471 Atomic orbital electron populations 1.22525 0.97038 1.02256 1.02240 1.20940 0.91527 0.95307 0.90117 1.21711 1.02971 0.93448 1.00279 1.22120 0.87738 0.98630 0.97393 1.62148 1.05276 1.53631 1.03662 1.23468 0.94338 0.94349 1.00938 1.22738 0.93978 1.01216 0.83352 1.87964 1.66042 1.60376 1.16666 1.22565 0.91271 0.94897 0.92300 1.22792 0.96847 0.99908 0.91893 1.60763 1.61510 1.07180 1.00684 1.22079 0.98095 0.97594 0.89207 1.22312 0.97334 0.86365 0.95617 1.87788 1.69770 1.23675 1.50704 1.20158 0.94605 0.89729 0.83132 1.21040 1.27041 0.97075 1.10164 0.91712 1.24938 0.95341 0.99101 0.95038 1.69961 1.35250 1.35450 1.13014 0.86360 0.79075 0.82821 0.78368 1.20510 1.21047 1.19683 0.92483 0.91834 0.92519 0.90603 0.93384 0.93250 0.94571 0.90858 0.94935 0.84015 0.92627 0.88622 0.92617 0.89135 0.90316 0.94448 0.82764 0.94348 0.90315 0.94328 0.93682 0.97916 0.97634 0.92648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.94 8.23 37.16 0.31 -1.63 16 2 C 0.11 1.25 0.72 -131.60 -0.10 1.16 16 3 C -0.13 -1.32 8.02 37.15 0.30 -1.02 16 4 C 0.07 0.76 4.25 -3.82 -0.02 0.74 16 5 N -0.52 -5.93 3.67 -234.30 -0.86 -6.79 16 6 C 0.00 -0.04 5.29 -3.71 -0.02 -0.06 16 7 C 0.06 0.79 7.01 37.21 0.26 1.05 16 8 O -0.39 -5.13 10.83 -35.23 -0.38 -5.52 16 9 C 0.07 0.68 7.01 37.21 0.26 0.94 16 10 C 0.01 0.14 5.61 -3.71 -0.02 0.12 16 11 N -0.67 -8.98 2.89 -99.96 -0.29 -9.27 16 12 C 0.06 0.83 5.32 -3.83 -0.02 0.81 16 13 C 0.06 1.10 6.28 37.15 0.23 1.34 16 14 O -0.40 -9.23 9.85 -35.23 -0.35 -9.57 16 15 C 0.20 5.36 5.69 36.01 0.20 5.56 16 16 C -0.52 -15.00 9.43 -34.44 -0.32 -15.33 16 17 H 0.06 1.87 7.81 -52.49 -0.41 1.46 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.90 -26.78 13.29 55.43 0.74 -26.05 16 20 Si 0.91 21.77 29.54 -169.99 -5.02 16.75 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.71 6.40 -51.93 -0.33 0.38 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.07 0.88 7.46 -51.93 -0.39 0.49 16 28 H 0.05 0.49 6.40 -51.93 -0.33 0.16 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.04 0.43 8.02 -51.93 -0.42 0.02 16 31 H 0.07 0.70 7.89 -51.93 -0.41 0.29 16 32 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.14 2.00 5.05 -51.93 -0.26 1.74 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.08 0.66 8.03 -51.93 -0.42 0.24 16 39 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.35 5.48 8.27 -39.29 -0.33 5.15 16 41 H 0.04 0.56 6.30 -51.93 -0.33 0.23 16 42 H 0.08 0.98 6.30 -51.93 -0.33 0.65 16 43 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.00 0.09 8.14 -51.93 -0.42 -0.34 16 46 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 47 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 361.80 15.07 5.45 5.45 Total: -1.00 -30.27 361.80 -8.32 -38.59 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -8.58 Total: 1.18 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: 0.97 Total: -4.78 kcal Atomic # 7 Polarization: -41.69 SS G_CDS: -0.41 Total: -42.10 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -0.73 Total: -15.09 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.27 -8.32 -38.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308649323.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.356 kcal (2) G-P(sol) polarization free energy of solvation -30.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds