Wall clock time and date at job start Tue Mar 31 2020 03:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52991 * 109.47519 * 2 1 4 4 C 1.53008 * 109.46977 * 120.00303 * 2 1 3 5 5 N 1.46899 * 109.46585 * 185.44391 * 4 2 1 6 6 C 1.47012 * 110.99981 * 285.96885 * 5 4 2 7 7 C 1.53096 * 109.25871 * 177.61266 * 6 5 4 8 8 O 1.43016 * 109.26234 * 56.85020 * 7 6 5 9 9 C 1.43019 * 113.73430 * 301.33236 * 8 7 6 10 10 C 1.47012 * 110.99607 * 162.34115 * 5 4 2 11 11 N 1.46901 * 109.46678 * 239.99606 * 2 1 3 12 12 C 1.46899 * 111.00146 * 60.00377 * 11 2 1 13 13 C 1.52993 * 109.47548 * 179.97438 * 12 11 2 14 14 O 1.42904 * 109.46868 * 64.99780 * 13 12 11 15 15 C 1.42904 * 113.99894 * 179.97438 * 14 13 12 16 16 C 1.50700 * 109.46823 * 180.02562 * 15 14 13 17 17 H 1.07995 * 120.00148 * 0.02562 * 16 15 14 18 18 C 1.37878 * 119.99631 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99994 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99897 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.46730 * 90.00626 * 20 18 16 22 22 H 1.48494 * 109.46932 * 210.00488 * 20 18 16 23 23 H 1.48498 * 109.47048 * 330.00437 * 20 18 16 24 24 H 1.08996 * 109.46845 * 299.99958 * 1 2 3 25 25 H 1.08993 * 109.47051 * 60.00244 * 1 2 3 26 26 H 1.09000 * 109.47069 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47632 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.46856 * 300.00364 * 3 2 1 29 29 H 1.09000 * 109.47281 * 59.99435 * 3 2 1 30 30 H 1.08993 * 109.47103 * 65.44482 * 4 2 1 31 31 H 1.09000 * 109.46851 * 305.43915 * 4 2 1 32 32 H 1.09005 * 109.51110 * 297.54945 * 6 5 4 33 33 H 1.09003 * 109.50704 * 57.67830 * 6 5 4 34 34 H 1.09001 * 109.50254 * 296.91404 * 7 6 5 35 35 H 1.08999 * 109.54182 * 176.80719 * 7 6 5 36 36 H 1.08997 * 109.50943 * 298.73361 * 9 8 7 37 37 H 1.09002 * 109.53793 * 178.62197 * 9 8 7 38 38 H 1.09006 * 109.50680 * 302.31843 * 10 5 4 39 39 H 1.08996 * 109.51486 * 62.40978 * 10 5 4 40 40 H 1.00899 * 111.00519 * 296.04862 * 11 2 1 41 41 H 1.09002 * 109.46818 * 300.00168 * 12 11 2 42 42 H 1.09004 * 109.46802 * 59.99211 * 12 11 2 43 43 H 1.08999 * 109.47438 * 184.99651 * 13 12 11 44 44 H 1.09001 * 109.47063 * 305.00561 * 13 12 11 45 45 H 1.09000 * 109.47149 * 300.00255 * 15 14 13 46 46 H 1.09000 * 109.47084 * 60.00118 * 15 14 13 47 47 H 0.96999 * 119.99532 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 1.2493 5 7 3.5031 -0.6086 1.3167 6 6 4.1453 -1.4857 0.3270 7 6 5.6628 -1.2930 0.3908 8 8 6.1162 -1.5552 1.7216 9 6 5.5115 -0.7182 2.7111 10 6 3.9925 -0.9052 2.6709 11 7 2.0196 -0.6926 -1.1994 12 6 1.5486 -0.0265 -2.4211 13 6 2.0780 -0.7744 -3.6463 14 8 1.5094 -2.0848 -3.6869 15 6 1.9405 -2.8712 -4.7995 16 6 1.2818 -4.2254 -4.7426 17 1 0.6017 -4.4618 -3.9376 18 6 1.5466 -5.1624 -5.7188 19 7 2.3744 -4.8744 -6.6994 20 14 0.7296 -6.8408 -5.6488 21 1 -0.5565 -6.7965 -6.3898 22 1 1.6231 -7.8524 -6.2679 23 1 0.4728 -7.2076 -4.2329 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1301 1.4424 -0.0005 28 1 1.6767 1.9562 -0.8900 29 1 1.6768 1.9563 0.8899 30 1 1.7585 -1.7732 1.2018 31 1 1.5993 -0.2669 2.1366 32 1 3.9008 -2.5247 0.5484 33 1 3.7878 -1.2317 -0.6708 34 1 5.9112 -0.2676 0.1170 35 1 6.1472 -1.9820 -0.3011 36 1 5.7555 0.3239 2.5049 37 1 5.8858 -0.9913 3.6977 38 1 3.5234 -0.2273 3.3841 39 1 3.7449 -1.9345 2.9301 40 1 1.7501 -1.6649 -1.1909 41 1 0.4587 -0.0266 -2.4378 42 1 1.9121 1.0010 -2.4378 43 1 1.8034 -0.2310 -4.5504 44 1 3.1636 -0.8512 -3.5840 45 1 1.6627 -2.3711 -5.7273 46 1 3.0231 -2.9915 -4.7617 47 1 2.5610 -5.5337 -7.3859 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308649323.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:05:55 Heat of formation + Delta-G solvation = -105.716532 kcal Electronic energy + Delta-G solvation = -24165.630010 eV Core-core repulsion = 20768.755631 eV Total energy + Delta-G solvation = -3396.874380 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 286.204 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.76908 -39.36002 -38.28960 -36.01257 -34.93148 -32.94472 -32.01222 -29.76972 -28.92117 -28.37104 -28.00225 -25.30524 -24.81625 -24.48684 -22.71921 -21.22274 -20.11671 -18.65010 -17.59907 -17.36197 -17.09357 -16.89711 -16.59480 -16.40319 -16.08004 -15.85122 -15.67128 -15.33445 -15.02962 -14.89471 -14.35651 -13.94040 -13.70850 -13.50220 -13.41740 -13.13969 -12.92572 -12.82920 -12.70929 -12.60820 -12.39550 -12.25922 -12.16561 -12.11557 -11.94130 -11.68478 -11.57428 -11.42448 -11.25695 -10.86644 -10.58797 -10.21273 -9.32460 -9.04708 -8.32504 -6.44648 1.38931 1.41422 1.53260 2.33638 2.83558 3.01594 3.05567 3.18948 3.25628 3.83612 4.03387 4.10431 4.14494 4.23068 4.27008 4.29274 4.36973 4.37206 4.47050 4.57230 4.61595 4.69905 4.71737 4.74427 4.81153 4.82466 4.86765 4.92367 4.94771 5.03208 5.10701 5.11556 5.15115 5.19825 5.31380 5.39589 5.54390 5.61097 5.96089 6.06879 6.08996 6.21528 6.30324 6.43164 6.54192 6.82551 7.27428 8.79765 Molecular weight = 286.20amu Principal moments of inertia in cm(-1) A = 0.015956 B = 0.003874 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.415995 B = 7226.406528 C = 8044.553374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.113 3.887 3 C -0.120 4.120 4 C 0.071 3.929 5 N -0.520 5.520 6 C 0.004 3.996 7 C 0.066 3.934 8 O -0.412 6.412 9 C 0.062 3.938 10 C 0.014 3.986 11 N -0.672 5.672 12 C 0.072 3.928 13 C 0.055 3.945 14 O -0.407 6.407 15 C 0.213 3.787 16 C -0.547 4.547 17 H 0.061 0.939 18 C 0.008 3.992 19 N -0.930 5.930 20 Si 0.981 3.019 21 H -0.268 1.268 22 H -0.275 1.275 23 H -0.265 1.265 24 H 0.077 0.923 25 H 0.059 0.941 26 H 0.042 0.958 27 H 0.064 0.936 28 H 0.050 0.950 29 H 0.065 0.935 30 H 0.020 0.980 31 H 0.095 0.905 32 H 0.009 0.991 33 H 0.130 0.870 34 H 0.062 0.938 35 H 0.092 0.908 36 H 0.063 0.937 37 H 0.112 0.888 38 H 0.104 0.896 39 H 0.026 0.974 40 H 0.338 0.662 41 H 0.037 0.963 42 H 0.104 0.896 43 H 0.043 0.957 44 H 0.043 0.957 45 H -0.017 1.017 46 H -0.015 1.015 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.110 13.187 18.853 23.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.022 3.978 3 C -0.177 4.177 4 C -0.057 4.057 5 N -0.244 5.244 6 C -0.125 4.125 7 C -0.011 4.011 8 O -0.331 6.331 9 C -0.014 4.014 10 C -0.114 4.114 11 N -0.303 5.303 12 C -0.057 4.057 13 C -0.023 4.023 14 O -0.327 6.327 15 C 0.138 3.862 16 C -0.584 4.584 17 H 0.079 0.921 18 C -0.191 4.191 19 N -0.569 5.569 20 Si 0.804 3.196 21 H -0.193 1.193 22 H -0.200 1.200 23 H -0.190 1.190 24 H 0.096 0.904 25 H 0.078 0.922 26 H 0.061 0.939 27 H 0.083 0.917 28 H 0.068 0.932 29 H 0.084 0.916 30 H 0.038 0.962 31 H 0.113 0.887 32 H 0.028 0.972 33 H 0.148 0.852 34 H 0.080 0.920 35 H 0.110 0.890 36 H 0.081 0.919 37 H 0.130 0.870 38 H 0.122 0.878 39 H 0.044 0.956 40 H 0.156 0.844 41 H 0.055 0.945 42 H 0.122 0.878 43 H 0.062 0.938 44 H 0.061 0.939 45 H 0.001 0.999 46 H 0.003 0.997 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.941 13.732 18.769 23.337 hybrid contribution -1.359 -1.859 -0.598 2.379 sum 0.582 11.874 18.171 21.714 Atomic orbital electron populations 1.22471 0.96418 1.01644 1.03057 1.21032 0.91963 0.95678 0.89082 1.21650 1.02187 0.92634 1.01247 1.22150 0.87556 0.97881 0.98108 1.62183 1.05454 1.52743 1.04068 1.23308 0.94965 0.93320 1.00886 1.22697 0.93459 1.01446 0.83489 1.87935 1.66640 1.61413 1.17147 1.22791 0.91172 0.94959 0.92513 1.22873 0.97093 0.99917 0.91494 1.60816 1.61751 1.06398 1.01365 1.21992 0.97828 0.97980 0.87868 1.22620 0.97347 0.84313 0.97975 1.87755 1.70107 1.25821 1.49028 1.19755 0.93089 0.89848 0.83521 1.21376 1.27841 0.98459 1.10742 0.92075 1.25927 0.95613 1.03353 0.94208 1.70070 1.36139 1.37115 1.13612 0.85219 0.78310 0.77313 0.78790 1.19307 1.19996 1.18963 0.90404 0.92239 0.93852 0.91694 0.93152 0.91556 0.96182 0.88666 0.97222 0.85241 0.91998 0.88964 0.91862 0.87048 0.87792 0.95585 0.84439 0.94525 0.87801 0.93831 0.93873 0.99932 0.99739 0.92081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.48 8.23 71.98 0.59 -2.88 16 2 C 0.11 2.36 0.72 3.53 0.00 2.36 16 3 C -0.12 -2.19 8.02 71.98 0.58 -1.61 16 4 C 0.07 1.45 4.25 86.31 0.37 1.82 16 5 N -0.52 -11.19 3.67 -895.20 -3.29 -14.48 16 6 C 0.00 0.09 5.29 86.31 0.46 0.55 16 7 C 0.07 1.64 7.01 72.01 0.50 2.14 16 8 O -0.41 -10.57 10.83 -148.98 -1.61 -12.18 16 9 C 0.06 1.15 7.01 72.02 0.50 1.66 16 10 C 0.01 0.26 5.61 86.32 0.48 0.75 16 11 N -0.67 -17.91 2.89 -470.18 -1.36 -19.27 16 12 C 0.07 1.99 5.32 86.30 0.46 2.45 16 13 C 0.05 1.98 6.28 71.98 0.45 2.43 16 14 O -0.41 -19.36 9.85 -148.98 -1.47 -20.82 16 15 C 0.21 11.96 5.69 71.24 0.41 12.36 16 16 C -0.55 -32.51 9.43 25.60 0.24 -32.27 16 17 H 0.06 3.59 7.81 -2.91 -0.02 3.57 16 18 C 0.01 0.44 5.46 84.65 0.46 0.90 16 19 N -0.93 -56.13 13.29 21.45 0.28 -55.85 16 20 Si 0.98 44.51 29.54 68.60 2.03 46.53 16 21 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 22 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 23 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 24 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.06 1.22 6.40 -2.39 -0.02 1.21 16 26 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.06 1.36 7.46 -2.39 -0.02 1.34 16 28 H 0.05 0.90 6.40 -2.38 -0.02 0.88 16 29 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.02 0.48 8.02 -2.39 -0.02 0.46 16 31 H 0.10 1.54 7.89 -2.39 -0.02 1.52 16 32 H 0.01 0.29 8.14 -2.38 -0.02 0.27 16 33 H 0.13 3.75 5.05 -2.39 -0.01 3.73 16 34 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.09 2.28 8.14 -2.39 -0.02 2.27 16 36 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.10 1.41 8.03 -2.38 -0.02 1.39 16 39 H 0.03 0.54 8.14 -2.39 -0.02 0.53 16 40 H 0.34 10.77 8.27 -89.69 -0.74 10.03 16 41 H 0.04 1.04 6.30 -2.39 -0.02 1.02 16 42 H 0.10 2.38 6.30 -2.39 -0.02 2.37 16 43 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 45 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 46 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 47 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -65.63 361.80 0.28 -65.35 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: 0.18 Total: 20.07 kcal Atomic # 6 Polarization: -14.86 SS G_CDS: 5.51 Total: -9.35 kcal Atomic # 7 Polarization: -85.24 SS G_CDS: -4.36 Total: -89.60 kcal Atomic # 8 Polarization: -29.92 SS G_CDS: -3.08 Total: -33.00 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -65.63 0.28 -65.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308649323.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.370 kcal (2) G-P(sol) polarization free energy of solvation -65.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds