Wall clock time and date at job start Tue Mar 31 2020 03:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50698 * 109.47184 * 239.99558 * 2 1 3 5 5 H 1.07993 * 120.00472 * 240.00439 * 4 2 1 6 6 C 1.37882 * 119.99554 * 60.00544 * 4 2 1 7 7 N 1.31515 * 120.00420 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99716 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47454 * 59.99745 * 8 6 4 10 10 H 1.48503 * 109.46926 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47302 * 299.99567 * 8 6 4 12 12 N 1.46500 * 109.46998 * 119.99942 * 2 1 3 13 13 C 1.34773 * 119.99910 * 275.00232 * 12 2 1 14 14 O 1.21692 * 120.00504 * 359.97438 * 13 12 2 15 15 C 1.46658 * 119.99882 * 179.97438 * 13 12 2 16 16 C 1.36550 * 125.98835 * 179.97438 * 15 13 12 17 17 C 1.40364 * 106.70732 * 179.97438 * 16 15 13 18 18 C 1.35130 * 107.11726 * 0.02562 * 17 16 15 19 19 S 1.76194 * 125.61713 * 180.02562 * 18 17 16 20 20 C 1.81407 * 104.44624 * 89.99830 * 19 18 17 21 21 O 1.42093 * 104.28107 * 206.07270 * 19 18 17 22 22 O 1.42105 * 104.27817 * 333.93234 * 19 18 17 23 23 O 1.33929 * 108.76458 * 359.76800 * 18 17 16 24 24 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 25 25 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 27 27 H 0.97001 * 120.00306 * 180.02562 * 7 6 4 28 28 H 0.96995 * 120.00293 * 94.99410 * 12 2 1 29 29 H 1.08006 * 126.64361 * 359.97438 * 16 15 13 30 30 H 1.08004 * 126.44028 * 179.97438 * 17 16 15 31 31 H 1.08998 * 109.47039 * 60.00468 * 20 19 18 32 32 H 1.08998 * 109.46825 * 179.97438 * 20 19 18 33 33 H 1.08992 * 109.47107 * 299.99890 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3226 -1.1196 -4.0078 9 1 1.8282 -2.5199 -4.0081 10 1 1.8271 -0.4199 -5.2204 11 1 3.8076 -1.1190 -4.0077 12 7 2.0184 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3571 14 8 1.8580 1.1626 2.4117 15 6 2.6353 -0.7097 3.5547 16 6 2.8123 -0.1507 4.7879 17 6 3.2907 -1.1688 5.6275 18 6 3.3841 -2.2902 4.8795 19 16 3.9347 -3.8629 5.4523 20 6 2.4253 -4.6892 6.0266 21 8 4.4412 -4.5020 4.2887 22 8 4.7847 -3.5582 6.5496 23 8 2.9838 -2.0108 3.6323 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 0.7083 1.1609 -3.4845 28 1 2.2490 -1.6317 1.1527 29 1 2.6213 0.8759 5.0638 30 1 3.5384 -1.0734 6.6745 31 1 1.7235 -4.7810 5.1976 32 1 2.6749 -5.6814 6.4023 33 1 1.9707 -4.1019 6.8243 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330743583.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:41 Heat of formation + Delta-G solvation = -114.591387 kcal Electronic energy + Delta-G solvation = -20323.304449 eV Core-core repulsion = 16863.580152 eV Total energy + Delta-G solvation = -3459.724297 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 287.071 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.91593 -40.59176 -38.28500 -37.14234 -36.94838 -34.65368 -34.23816 -32.01420 -30.57792 -30.17883 -27.39633 -25.44241 -23.37985 -22.64511 -21.45325 -20.52162 -19.85880 -18.83494 -17.99117 -17.86082 -17.31479 -16.93536 -16.79509 -16.32771 -15.76587 -15.36371 -14.95707 -14.52532 -14.43554 -14.22309 -13.97694 -13.93674 -13.77972 -13.29246 -13.18794 -13.09355 -12.94799 -12.80820 -12.71077 -12.32803 -12.19574 -12.01525 -11.40309 -11.35583 -11.19380 -10.65485 -10.38622 -9.94908 -8.22030 -6.39930 -1.09316 -0.48575 0.86203 1.27851 1.44632 1.46348 1.54303 1.76607 1.97832 2.26455 2.46583 2.84905 3.08680 3.23209 3.61121 3.71993 4.11250 4.14847 4.25871 4.31642 4.58897 4.68667 4.85221 4.99018 4.99355 5.01027 5.27898 5.32604 5.48868 5.61058 5.79804 6.01050 6.59976 6.66253 7.05486 7.32798 8.84155 Molecular weight = 287.07amu Principal moments of inertia in cm(-1) A = 0.023399 B = 0.004015 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.366008 B = 6971.529735 C = 7753.660854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.266 3.734 3 H 0.010 0.990 4 C -0.554 4.554 5 H 0.070 0.930 6 C 0.020 3.980 7 N -0.913 5.913 8 Si 0.973 3.027 9 H -0.264 1.264 10 H -0.282 1.282 11 H -0.273 1.273 12 N -0.688 5.688 13 C 0.580 3.420 14 O -0.562 6.562 15 C -0.042 4.042 16 C -0.147 4.147 17 C -0.093 4.093 18 C -0.551 4.551 19 S 2.536 3.464 20 C -0.611 4.611 21 O -0.966 6.966 22 O -0.941 6.941 23 O -0.121 6.121 24 H 0.073 0.927 25 H 0.042 0.958 26 H 0.018 0.982 27 H 0.268 0.732 28 H 0.408 0.592 29 H 0.181 0.819 30 H 0.213 0.787 31 H 0.150 0.850 32 H 0.169 0.831 33 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.295 -12.115 19.770 23.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.164 3.836 3 H 0.028 0.972 4 C -0.592 4.592 5 H 0.088 0.912 6 C -0.181 4.181 7 N -0.551 5.551 8 Si 0.797 3.203 9 H -0.189 1.189 10 H -0.207 1.207 11 H -0.198 1.198 12 N -0.335 5.335 13 C 0.365 3.635 14 O -0.444 6.444 15 C -0.097 4.097 16 C -0.168 4.168 17 C -0.112 4.112 18 C -0.678 4.678 19 S 2.710 3.290 20 C -0.766 4.766 21 O -0.963 6.963 22 O -0.939 6.939 23 O -0.015 6.015 24 H 0.092 0.908 25 H 0.061 0.939 26 H 0.037 0.963 27 H 0.077 0.923 28 H 0.243 0.757 29 H 0.198 0.802 30 H 0.230 0.770 31 H 0.169 0.831 32 H 0.187 0.813 33 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 1.830 -11.568 19.295 22.571 hybrid contribution -0.349 0.369 -1.045 1.162 sum 1.481 -11.199 18.250 21.464 Atomic orbital electron populations 1.21909 0.97334 0.99869 1.00183 1.18590 0.91829 0.92234 0.80946 0.97225 1.21454 1.33192 1.13830 0.90764 0.91174 1.25744 0.94672 0.95519 1.02122 1.70016 1.36520 1.23627 1.24934 0.85385 0.78565 0.78769 0.77562 1.18878 1.20741 1.19841 1.46394 1.63079 1.14480 1.09540 1.16992 0.78590 0.85864 0.82058 1.90829 1.53265 1.15672 1.84620 1.22792 1.05834 0.83691 0.97424 1.22462 1.01035 1.02717 0.90560 1.22349 0.96328 0.89614 1.02957 1.36426 1.18705 1.24355 0.88334 1.05052 0.78423 0.71875 0.73621 1.29993 1.16941 1.14819 1.14852 1.93575 1.78906 1.73674 1.50162 1.93604 1.63538 1.83221 1.53509 1.84193 1.62531 1.25419 1.29321 0.90844 0.93878 0.96320 0.92270 0.75706 0.80195 0.77044 0.83128 0.81309 0.81681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.71 9.26 71.98 0.67 -6.04 16 2 C 0.27 13.95 2.56 44.25 0.11 14.06 16 3 H 0.01 0.60 7.58 -2.39 -0.02 0.58 16 4 C -0.55 -29.75 8.73 25.60 0.22 -29.52 16 5 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 6 C 0.02 1.09 5.30 84.66 0.45 1.54 16 7 N -0.91 -51.72 11.32 21.45 0.24 -51.48 16 8 Si 0.97 42.18 29.54 68.60 2.03 44.20 16 9 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 10 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 11 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 12 N -0.69 -30.29 5.06 -450.09 -2.28 -32.57 16 13 C 0.58 24.59 7.75 86.44 0.67 25.26 16 14 O -0.56 -27.43 16.53 -4.32 -0.07 -27.50 16 15 C -0.04 -1.40 7.13 24.08 0.17 -1.22 16 16 C -0.15 -3.91 10.62 22.39 0.24 -3.67 16 17 C -0.09 -1.83 10.51 22.07 0.23 -1.60 16 18 C -0.55 -12.00 6.97 67.10 0.47 -11.53 16 19 S 2.54 38.08 5.95 -56.49 -0.34 37.75 16 20 C -0.61 -1.81 10.80 113.37 1.22 -0.59 16 21 O -0.97 -24.15 17.95 -126.82 -2.28 -26.43 16 22 O -0.94 -17.95 17.70 -127.65 -2.26 -20.21 16 23 O -0.12 -3.59 10.40 -5.01 -0.05 -3.64 16 24 H 0.07 3.99 6.07 -2.39 -0.01 3.97 16 25 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 28 H 0.41 15.98 8.29 -92.71 -0.77 15.21 16 29 H 0.18 4.30 8.06 -2.91 -0.02 4.28 16 30 H 0.21 2.32 8.06 -2.91 -0.02 2.30 16 31 H 0.15 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.17 -0.31 8.14 -2.39 -0.02 -0.33 16 33 H 0.17 -0.31 8.14 -2.39 -0.02 -0.33 16 Total: -1.00 -79.58 310.20 -0.17 -79.75 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: 0.38 Total: 13.44 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: 4.46 Total: -13.32 kcal Atomic # 7 Polarization: -82.01 SS G_CDS: -2.04 Total: -84.05 kcal Atomic # 8 Polarization: -73.12 SS G_CDS: -4.66 Total: -77.78 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.20 kcal Atomic # 16 Polarization: 38.08 SS G_CDS: -0.34 Total: 37.75 kcal Total: -79.58 -0.17 -79.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330743583.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.841 kcal (2) G-P(sol) polarization free energy of solvation -79.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds