Wall clock time and date at job start Tue Mar 31 2020 02:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.47131 * 2 1 4 4 C 1.46504 * 120.00179 * 270.00187 * 3 2 1 5 5 C 1.50698 * 109.46769 * 269.99755 * 4 3 2 6 6 H 1.07998 * 120.00484 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99795 * 180.02562 * 5 4 3 8 8 N 1.31521 * 119.99775 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00093 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.46910 * 90.00534 * 9 7 5 11 11 H 1.48503 * 109.47356 * 210.00067 * 9 7 5 12 12 H 1.48502 * 109.47122 * 330.00390 * 9 7 5 13 13 C 1.34779 * 119.99853 * 89.99832 * 3 2 1 14 14 O 1.21289 * 119.99728 * 180.02562 * 13 3 2 15 15 C 1.50701 * 120.00230 * 0.27568 * 13 3 2 16 16 N 1.46892 * 109.47092 * 173.51741 * 15 13 3 17 17 C 1.47016 * 110.99965 * 170.01726 * 16 15 13 18 18 C 1.53102 * 109.25837 * 182.39243 * 17 16 15 19 19 O 1.43017 * 109.25462 * 303.14803 * 18 17 16 20 20 C 1.43009 * 113.73625 * 58.67650 * 19 18 17 21 21 H 1.09000 * 109.51472 * 61.26204 * 20 19 18 22 22 C 1.53007 * 109.50806 * 181.38970 * 20 19 18 23 23 O 1.42902 * 109.46812 * 294.78639 * 22 20 19 24 24 C 1.47013 * 111.00252 * 293.64852 * 16 15 13 25 25 H 1.08995 * 109.47349 * 300.00286 * 1 2 3 26 26 H 1.09003 * 109.46653 * 60.00342 * 1 2 3 27 27 H 1.09000 * 109.46658 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47558 * 240.00389 * 2 1 3 29 29 H 1.09001 * 109.47221 * 120.00159 * 2 1 3 30 30 H 1.09000 * 109.46896 * 29.99267 * 4 3 2 31 31 H 1.08997 * 109.47110 * 149.99715 * 4 3 2 32 32 H 0.97003 * 119.99810 * 179.97438 * 8 7 5 33 33 H 1.09006 * 109.46959 * 293.51641 * 15 13 3 34 34 H 1.09001 * 109.46736 * 53.51812 * 15 13 3 35 35 H 1.08996 * 109.50632 * 302.32846 * 17 16 15 36 36 H 1.09001 * 109.50617 * 62.45373 * 17 16 15 37 37 H 1.09002 * 109.50477 * 183.22062 * 18 17 16 38 38 H 1.08991 * 109.54224 * 63.10990 * 18 17 16 39 39 H 1.09000 * 109.46703 * 54.77758 * 22 20 19 40 40 H 1.08992 * 109.47573 * 174.78072 * 22 20 19 41 41 H 0.96700 * 113.99653 * 180.02562 * 23 22 20 42 42 H 1.08990 * 109.51100 * 297.54905 * 24 16 15 43 43 H 1.09007 * 109.50183 * 57.67410 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8351 -1.7037 6 1 4.3429 1.2310 -1.0957 7 6 4.1494 2.3906 -2.8774 8 7 5.3914 2.1835 -3.2572 9 14 3.0131 3.4361 -3.9286 10 1 3.1158 4.8562 -3.5068 11 1 3.4068 3.3139 -5.3553 12 1 1.6135 2.9694 -3.7595 13 6 2.2429 2.0165 1.1672 14 8 2.6468 3.1602 1.1672 15 6 1.9977 1.3041 2.4724 16 7 2.4597 2.1458 3.5840 17 6 2.0262 1.5958 4.8767 18 6 2.4765 2.5329 6.0007 19 8 3.8949 2.7031 5.9330 20 6 4.3517 3.2376 4.6877 21 1 3.9176 4.2257 4.5344 22 6 5.8778 3.3467 4.7076 23 8 6.2741 4.3034 5.6924 24 6 3.9205 2.3078 3.5505 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3632 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.5818 1.6877 -2.0284 31 1 2.0955 3.1411 -1.1384 32 1 5.7175 2.5741 -4.0831 33 1 0.9313 1.1076 2.5842 34 1 2.5437 0.3608 2.4795 35 1 0.9399 1.5083 4.8891 36 1 2.4729 0.6122 5.0220 37 1 2.2074 2.1007 6.9645 38 1 1.9878 3.5004 5.8864 39 1 6.3082 2.3753 4.9508 40 1 6.2320 3.6660 3.7275 41 1 7.2310 4.4247 5.7601 42 1 4.3975 1.3357 3.6745 43 1 4.2168 2.7400 2.5946 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331145841.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:37:43 Heat of formation + Delta-G solvation = -112.850526 kcal Electronic energy + Delta-G solvation = -23970.467937 eV Core-core repulsion = 20437.451110 eV Total energy + Delta-G solvation = -3533.016827 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.02085 -38.84696 -36.68781 -35.66784 -35.05445 -32.74359 -31.87750 -30.42697 -29.55532 -27.76808 -26.31860 -24.59189 -23.01998 -22.62438 -21.73889 -20.42227 -18.36091 -17.40434 -16.95656 -16.76646 -16.52421 -16.18664 -15.41720 -15.36838 -15.05082 -14.46459 -14.25205 -14.00170 -13.91031 -13.52014 -13.45516 -13.03775 -12.85996 -12.48677 -12.24483 -12.06704 -11.99217 -11.78129 -11.48579 -11.26956 -11.06637 -10.97951 -10.73312 -10.54934 -10.48349 -10.16475 -10.06892 -9.69778 -9.56524 -8.98531 -8.61230 -8.28705 -7.73657 -6.11550 -4.10257 3.27372 3.30587 3.33414 3.35638 3.44335 3.71481 3.91856 4.31100 4.37635 4.85858 4.90670 4.98792 5.07436 5.13883 5.15860 5.21893 5.26328 5.28627 5.38830 5.44262 5.47066 5.48946 5.54047 5.69593 5.70895 5.77112 5.93343 6.00529 6.06363 6.11709 6.35656 6.65349 6.84704 6.92871 6.98313 7.19548 7.33852 7.58710 7.58988 8.23869 8.44370 8.90037 8.98856 9.49184 11.01784 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.016443 B = 0.004819 C = 0.003969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.476718 B = 5809.172711 C = 7053.811869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.105 3.895 3 N -0.594 5.594 4 C 0.217 3.783 5 C -0.528 4.528 6 H 0.073 0.927 7 C 0.073 3.927 8 N -0.898 5.898 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.508 3.492 14 O -0.522 6.522 15 C 0.038 3.962 16 N -0.517 5.517 17 C 0.017 3.983 18 C 0.066 3.934 19 O -0.378 6.378 20 C 0.098 3.902 21 H 0.077 0.923 22 C 0.085 3.915 23 O -0.567 6.567 24 C 0.024 3.976 25 H 0.051 0.949 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.085 0.915 29 H 0.066 0.934 30 H 0.029 0.971 31 H 0.036 0.964 32 H 0.264 0.736 33 H 0.100 0.900 34 H 0.059 0.941 35 H 0.086 0.914 36 H 0.042 0.958 37 H 0.097 0.903 38 H 0.059 0.941 39 H 0.052 0.948 40 H 0.068 0.932 41 H 0.378 0.622 42 H 0.039 0.961 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.523 -4.343 15.207 17.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.019 4.019 3 N -0.327 5.327 4 C 0.097 3.903 5 C -0.567 4.567 6 H 0.091 0.909 7 C -0.130 4.130 8 N -0.537 5.537 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.294 3.706 14 O -0.398 6.398 15 C -0.093 4.093 16 N -0.242 5.242 17 C -0.111 4.111 18 C -0.011 4.011 19 O -0.297 6.297 20 C 0.040 3.960 21 H 0.095 0.905 22 C 0.006 3.994 23 O -0.372 6.372 24 C -0.104 4.104 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.103 0.897 29 H 0.084 0.916 30 H 0.047 0.953 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.118 0.882 34 H 0.077 0.923 35 H 0.104 0.896 36 H 0.060 0.940 37 H 0.115 0.885 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.086 0.914 41 H 0.225 0.775 42 H 0.057 0.943 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -6.912 -3.226 15.215 17.020 hybrid contribution 0.241 -0.492 -1.008 1.147 sum -6.671 -3.718 14.208 16.130 Atomic orbital electron populations 1.22232 0.96721 1.01562 1.02282 1.21452 0.93447 0.83945 1.03030 1.47958 1.64452 1.13309 1.06980 1.19633 0.97241 0.93415 0.80034 1.21314 0.95332 1.32867 1.07137 0.90886 1.24852 0.94985 0.95786 0.97344 1.69898 1.15159 1.45008 1.23591 0.86850 0.81463 0.81633 0.79740 1.19885 1.21092 1.19084 1.20131 0.78714 0.87100 0.84674 1.90657 1.44625 1.17726 1.86809 1.22085 1.01932 0.94707 0.90531 1.61781 1.12317 1.48802 1.01293 1.22844 1.01270 0.97112 0.89916 1.22607 0.81889 0.98953 0.97680 1.87999 1.21548 1.84737 1.35373 1.22089 0.93284 0.97334 0.83249 0.90544 1.22127 0.93207 0.92158 0.91884 1.86509 1.27921 1.62693 1.60039 1.22809 0.87429 0.98897 1.01288 0.92993 0.92162 0.91992 0.89702 0.91604 0.95314 0.94568 0.92564 0.88212 0.92274 0.89607 0.94009 0.88545 0.92227 0.92932 0.91398 0.77524 0.94308 0.87195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.05 10.24 37.16 0.38 -1.67 16 2 C 0.11 1.58 5.96 -4.04 -0.02 1.55 16 3 N -0.59 -11.84 2.46 -175.05 -0.43 -12.27 16 4 C 0.22 5.22 4.23 -5.19 -0.02 5.20 16 5 C -0.53 -14.90 9.94 -34.44 -0.34 -15.24 16 6 H 0.07 2.25 8.06 -52.49 -0.42 1.83 16 7 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 8 N -0.90 -27.38 13.96 55.43 0.77 -26.61 16 9 Si 0.88 21.44 27.47 -169.99 -4.67 16.77 16 10 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.27 -6.13 6.54 56.52 0.37 -5.76 16 13 C 0.51 10.09 7.24 -10.98 -0.08 10.01 16 14 O -0.52 -12.57 14.25 5.55 0.08 -12.49 16 15 C 0.04 0.56 4.18 -4.98 -0.02 0.54 16 16 N -0.52 -7.76 4.42 -235.75 -1.04 -8.81 16 17 C 0.02 0.19 5.64 -3.71 -0.02 0.17 16 18 C 0.07 0.77 7.01 37.21 0.26 1.03 16 19 O -0.38 -5.53 10.44 -39.73 -0.41 -5.94 16 20 C 0.10 1.47 3.09 -26.68 -0.08 1.39 16 21 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 22 C 0.08 1.10 6.71 37.16 0.25 1.35 16 23 O -0.57 -7.28 13.63 -39.73 -0.54 -7.82 16 24 C 0.02 0.37 4.58 -3.71 -0.02 0.36 16 25 H 0.05 0.59 7.44 -51.93 -0.39 0.20 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 29 H 0.07 0.83 6.26 -51.93 -0.33 0.50 16 30 H 0.03 0.66 7.13 -51.93 -0.37 0.29 16 31 H 0.04 0.94 6.85 -51.93 -0.36 0.58 16 32 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 33 H 0.10 1.21 7.34 -51.93 -0.38 0.83 16 34 H 0.06 0.79 7.04 -51.93 -0.37 0.43 16 35 H 0.09 0.81 8.09 -51.93 -0.42 0.39 16 36 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.38 2.90 9.12 45.56 0.42 3.32 16 42 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.11 2.08 6.10 -51.92 -0.32 1.76 16 LS Contribution 344.75 15.07 5.20 5.20 Total: -1.00 -35.46 344.75 -7.18 -42.64 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -6.32 Total: 2.64 kcal Atomic # 6 Polarization: 6.50 SS G_CDS: 0.18 Total: 6.69 kcal Atomic # 7 Polarization: -46.98 SS G_CDS: -0.70 Total: -47.68 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: -0.88 Total: -26.25 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.67 Total: 16.77 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -35.46 -7.18 -42.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331145841.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.210 kcal (2) G-P(sol) polarization free energy of solvation -35.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds