Wall clock time and date at job start Tue Mar 31 2020 02:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.47131 * 2 1 4 4 C 1.46504 * 120.00179 * 270.00187 * 3 2 1 5 5 C 1.50698 * 109.46769 * 269.99755 * 4 3 2 6 6 H 1.07998 * 120.00484 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99795 * 180.02562 * 5 4 3 8 8 N 1.31521 * 119.99775 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00093 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.46910 * 90.00534 * 9 7 5 11 11 H 1.48503 * 109.47356 * 210.00067 * 9 7 5 12 12 H 1.48502 * 109.47122 * 330.00390 * 9 7 5 13 13 C 1.34779 * 119.99853 * 89.99832 * 3 2 1 14 14 O 1.21289 * 119.99728 * 180.02562 * 13 3 2 15 15 C 1.50701 * 120.00230 * 0.27568 * 13 3 2 16 16 N 1.46892 * 109.47092 * 173.51741 * 15 13 3 17 17 C 1.47016 * 110.99965 * 170.01726 * 16 15 13 18 18 C 1.53102 * 109.25837 * 182.39243 * 17 16 15 19 19 O 1.43017 * 109.25462 * 303.14803 * 18 17 16 20 20 C 1.43009 * 113.73625 * 58.67650 * 19 18 17 21 21 H 1.09000 * 109.51472 * 61.26204 * 20 19 18 22 22 C 1.53007 * 109.50806 * 181.38970 * 20 19 18 23 23 O 1.42902 * 109.46812 * 294.78639 * 22 20 19 24 24 C 1.47013 * 111.00252 * 293.64852 * 16 15 13 25 25 H 1.08995 * 109.47349 * 300.00286 * 1 2 3 26 26 H 1.09003 * 109.46653 * 60.00342 * 1 2 3 27 27 H 1.09000 * 109.46658 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47558 * 240.00389 * 2 1 3 29 29 H 1.09001 * 109.47221 * 120.00159 * 2 1 3 30 30 H 1.09000 * 109.46896 * 29.99267 * 4 3 2 31 31 H 1.08997 * 109.47110 * 149.99715 * 4 3 2 32 32 H 0.97003 * 119.99810 * 179.97438 * 8 7 5 33 33 H 1.09006 * 109.46959 * 293.51641 * 15 13 3 34 34 H 1.09001 * 109.46736 * 53.51812 * 15 13 3 35 35 H 1.08996 * 109.50632 * 302.32846 * 17 16 15 36 36 H 1.09001 * 109.50617 * 62.45373 * 17 16 15 37 37 H 1.09002 * 109.50477 * 183.22062 * 18 17 16 38 38 H 1.08991 * 109.54224 * 63.10990 * 18 17 16 39 39 H 1.09000 * 109.46703 * 54.77758 * 22 20 19 40 40 H 1.08992 * 109.47573 * 174.78072 * 22 20 19 41 41 H 0.96700 * 113.99653 * 180.02562 * 23 22 20 42 42 H 1.08990 * 109.51100 * 297.54905 * 24 16 15 43 43 H 1.09007 * 109.50183 * 57.67410 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8351 -1.7037 6 1 4.3429 1.2310 -1.0957 7 6 4.1494 2.3906 -2.8774 8 7 5.3914 2.1835 -3.2572 9 14 3.0131 3.4361 -3.9286 10 1 3.1158 4.8562 -3.5068 11 1 3.4068 3.3139 -5.3553 12 1 1.6135 2.9694 -3.7595 13 6 2.2429 2.0165 1.1672 14 8 2.6468 3.1602 1.1672 15 6 1.9977 1.3041 2.4724 16 7 2.4597 2.1458 3.5840 17 6 2.0262 1.5958 4.8767 18 6 2.4765 2.5329 6.0007 19 8 3.8949 2.7031 5.9330 20 6 4.3517 3.2376 4.6877 21 1 3.9176 4.2257 4.5344 22 6 5.8778 3.3467 4.7076 23 8 6.2741 4.3034 5.6924 24 6 3.9205 2.3078 3.5505 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3632 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.5818 1.6877 -2.0284 31 1 2.0955 3.1411 -1.1384 32 1 5.7175 2.5741 -4.0831 33 1 0.9313 1.1076 2.5842 34 1 2.5437 0.3608 2.4795 35 1 0.9399 1.5083 4.8891 36 1 2.4729 0.6122 5.0220 37 1 2.2074 2.1007 6.9645 38 1 1.9878 3.5004 5.8864 39 1 6.3082 2.3753 4.9508 40 1 6.2320 3.6660 3.7275 41 1 7.2310 4.4247 5.7601 42 1 4.3975 1.3357 3.6745 43 1 4.2168 2.7400 2.5946 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331145841.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:37:42 Heat of formation + Delta-G solvation = -142.875378 kcal Electronic energy + Delta-G solvation = -23971.769912 eV Core-core repulsion = 20437.451110 eV Total energy + Delta-G solvation = -3534.318803 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.27767 -40.19724 -37.72249 -37.06997 -36.35673 -34.84752 -32.93031 -31.96910 -30.76604 -29.32099 -27.57127 -25.84379 -24.39555 -23.96400 -23.13012 -21.51232 -19.85741 -19.10898 -18.42680 -18.10598 -17.63548 -17.45620 -16.86760 -16.64688 -16.21013 -16.03014 -15.51259 -15.42288 -14.99568 -14.78932 -14.67295 -14.51139 -14.25402 -13.98117 -13.65013 -13.40732 -13.22479 -13.08035 -12.96294 -12.54320 -12.46416 -12.35782 -12.10119 -12.02549 -11.86471 -11.74696 -11.58368 -11.07023 -10.87319 -10.83527 -10.46394 -9.42271 -9.38237 -8.34980 -6.39392 1.31437 1.35570 1.43563 1.80718 2.14980 2.29904 2.66916 2.72329 2.99792 3.28897 3.67302 3.88081 3.91198 3.95685 4.06272 4.15621 4.20440 4.26909 4.33689 4.38093 4.44011 4.50900 4.52851 4.65129 4.68750 4.79290 4.79854 4.87084 4.92262 4.97311 5.01325 5.02450 5.39524 5.46726 5.65127 5.72644 5.91942 6.14520 6.24282 6.61569 6.74082 6.83444 7.21839 7.46873 8.81847 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.016443 B = 0.004819 C = 0.003969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.476718 B = 5809.172711 C = 7053.811869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.098 3.902 3 N -0.602 5.602 4 C 0.227 3.773 5 C -0.533 4.533 6 H 0.029 0.971 7 C 0.013 3.987 8 N -0.945 5.945 9 Si 0.945 3.055 10 H -0.278 1.278 11 H -0.275 1.275 12 H -0.239 1.239 13 C 0.497 3.503 14 O -0.576 6.576 15 C 0.052 3.948 16 N -0.538 5.538 17 C 0.020 3.980 18 C 0.058 3.942 19 O -0.389 6.389 20 C 0.103 3.897 21 H 0.051 0.949 22 C 0.087 3.913 23 O -0.583 6.583 24 C 0.032 3.968 25 H 0.063 0.937 26 H 0.044 0.956 27 H 0.094 0.906 28 H 0.071 0.929 29 H 0.094 0.906 30 H 0.047 0.953 31 H 0.016 0.984 32 H 0.268 0.732 33 H 0.137 0.863 34 H 0.078 0.922 35 H 0.115 0.885 36 H 0.054 0.946 37 H 0.129 0.871 38 H 0.052 0.948 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.399 0.601 42 H 0.046 0.954 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.083 -5.733 16.447 19.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.025 4.025 3 N -0.334 5.334 4 C 0.105 3.895 5 C -0.571 4.571 6 H 0.047 0.953 7 C -0.185 4.185 8 N -0.585 5.585 9 Si 0.768 3.232 10 H -0.204 1.204 11 H -0.200 1.200 12 H -0.162 1.162 13 C 0.285 3.715 14 O -0.456 6.456 15 C -0.079 4.079 16 N -0.264 5.264 17 C -0.107 4.107 18 C -0.018 4.018 19 O -0.308 6.308 20 C 0.044 3.956 21 H 0.069 0.931 22 C 0.008 3.992 23 O -0.391 6.391 24 C -0.096 4.096 25 H 0.082 0.918 26 H 0.064 0.936 27 H 0.113 0.887 28 H 0.089 0.911 29 H 0.113 0.887 30 H 0.064 0.936 31 H 0.034 0.966 32 H 0.077 0.923 33 H 0.154 0.846 34 H 0.096 0.904 35 H 0.133 0.867 36 H 0.072 0.928 37 H 0.147 0.853 38 H 0.070 0.930 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.249 0.751 42 H 0.064 0.936 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.493 -4.670 16.485 19.587 hybrid contribution 1.104 -0.097 -1.303 1.710 sum -8.389 -4.767 15.182 17.989 Atomic orbital electron populations 1.22154 0.93838 1.03644 1.02159 1.21784 0.95728 0.81116 1.03838 1.48078 1.64446 1.15138 1.05713 1.19254 0.94744 0.92927 0.82620 1.21545 0.97024 1.31927 1.06623 0.95274 1.25809 0.96631 0.97156 0.98938 1.70047 1.17367 1.46613 1.24497 0.85753 0.80539 0.79023 0.77868 1.20370 1.19997 1.16224 1.21151 0.77293 0.86763 0.86266 1.90631 1.46873 1.20348 1.87725 1.22049 1.04287 0.94165 0.87353 1.61736 1.11524 1.50067 1.03031 1.22955 1.03011 0.97174 0.87546 1.22900 0.80307 0.99104 0.99537 1.87983 1.23472 1.84564 1.34787 1.21956 0.94344 0.95853 0.83433 0.93072 1.22075 0.92251 0.92921 0.91928 1.86449 1.30199 1.62654 1.59825 1.22582 0.88599 0.98975 0.99469 0.91787 0.93631 0.88739 0.91086 0.88734 0.93555 0.96633 0.92312 0.84577 0.90396 0.86713 0.92789 0.85282 0.92990 0.91545 0.91702 0.75054 0.93576 0.91308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.28 10.24 71.98 0.74 -2.54 16 2 C 0.10 2.71 5.96 86.38 0.51 3.22 16 3 N -0.60 -23.74 2.46 -826.13 -2.03 -25.77 16 4 C 0.23 11.00 4.23 85.63 0.36 11.37 16 5 C -0.53 -31.15 9.94 25.60 0.25 -30.89 16 6 H 0.03 1.90 8.06 -2.91 -0.02 1.87 16 7 C 0.01 0.75 5.47 84.65 0.46 1.21 16 8 N -0.94 -59.57 13.96 21.45 0.30 -59.27 16 9 Si 0.95 44.61 27.47 68.60 1.88 46.49 16 10 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 11 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 12 H -0.24 -10.14 6.54 99.48 0.65 -9.49 16 13 C 0.50 19.70 7.24 87.66 0.64 20.33 16 14 O -0.58 -28.80 14.25 -3.06 -0.04 -28.85 16 15 C 0.05 1.40 4.18 85.56 0.36 1.75 16 16 N -0.54 -15.38 4.42 -899.79 -3.98 -19.35 16 17 C 0.02 0.40 5.64 86.32 0.49 0.88 16 18 C 0.06 1.21 7.01 72.02 0.50 1.72 16 19 O -0.39 -10.92 10.44 -144.68 -1.51 -12.43 16 20 C 0.10 3.11 3.09 30.63 0.09 3.20 16 21 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 22 C 0.09 2.28 6.71 71.98 0.48 2.77 16 23 O -0.58 -14.84 13.63 -144.68 -1.97 -16.82 16 24 C 0.03 1.03 4.58 86.31 0.40 1.43 16 25 H 0.06 1.17 7.44 -2.39 -0.02 1.16 16 26 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.07 2.16 8.07 -2.39 -0.02 2.14 16 29 H 0.09 2.07 6.26 -2.39 -0.01 2.05 16 30 H 0.05 2.08 7.13 -2.39 -0.02 2.06 16 31 H 0.02 0.82 6.85 -2.39 -0.02 0.80 16 32 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 33 H 0.14 2.69 7.34 -2.38 -0.02 2.67 16 34 H 0.08 1.84 7.04 -2.39 -0.02 1.82 16 35 H 0.11 1.62 8.09 -2.39 -0.02 1.60 16 36 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.13 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.05 1.16 8.14 -2.39 -0.02 1.15 16 39 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.40 5.89 9.12 -74.06 -0.68 5.21 16 42 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.07 2.77 6.10 -2.38 -0.01 2.76 16 Total: -1.00 -81.82 344.75 -1.79 -83.61 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: 0.27 Total: 17.94 kcal Atomic # 6 Polarization: 9.15 SS G_CDS: 5.29 Total: 14.44 kcal Atomic # 7 Polarization: -98.69 SS G_CDS: -5.71 Total: -104.40 kcal Atomic # 8 Polarization: -54.56 SS G_CDS: -3.53 Total: -58.09 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.88 Total: 46.49 kcal Total: -81.82 -1.79 -83.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331145841.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.263 kcal (2) G-P(sol) polarization free energy of solvation -81.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds