Wall clock time and date at job start Tue Mar 31 2020 02:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42906 * 113.99954 * 2 1 4 4 C 1.52992 * 109.47193 * 179.97438 * 3 2 1 5 5 H 1.09006 * 109.51669 * 55.09933 * 4 3 2 6 6 C 1.53300 * 109.55717 * 175.22483 * 4 3 2 7 7 N 1.47142 * 108.38746 * 172.24851 * 6 4 3 8 8 C 1.34788 * 120.98161 * 129.48785 * 7 6 4 9 9 O 1.21586 * 119.99876 * 175.00933 * 8 7 6 10 10 N 1.34779 * 119.99798 * 355.01477 * 8 7 6 11 11 C 1.46496 * 120.00085 * 185.08112 * 10 8 7 12 12 C 1.52993 * 109.47362 * 180.02562 * 11 10 8 13 13 C 1.50701 * 109.47352 * 179.97438 * 12 11 10 14 14 H 1.07995 * 119.99994 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00149 * 179.97438 * 13 12 11 16 16 N 1.31518 * 120.00052 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 120.00135 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.46811 * 90.00437 * 17 15 13 19 19 H 1.48498 * 109.46979 * 210.00427 * 17 15 13 20 20 H 1.48503 * 109.46870 * 330.00740 * 17 15 13 21 21 C 1.47258 * 118.06473 * 309.46924 * 7 6 4 22 22 C 1.53301 * 108.32608 * 50.50618 * 21 7 6 23 23 H 1.08997 * 109.51244 * 187.76945 * 22 21 7 24 24 C 1.53005 * 109.51058 * 67.66695 * 22 21 7 25 25 O 1.42959 * 109.26276 * 307.71826 * 22 21 7 26 26 H 1.09002 * 109.47573 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47359 * 300.00204 * 1 2 3 28 28 H 1.09008 * 109.47227 * 60.00347 * 1 2 3 29 29 H 1.08995 * 109.47489 * 59.99449 * 3 2 1 30 30 H 1.09005 * 109.46824 * 299.99680 * 3 2 1 31 31 H 1.09002 * 109.67880 * 291.97877 * 6 4 3 32 32 H 1.09006 * 109.67544 * 52.48961 * 6 4 3 33 33 H 0.97004 * 119.99857 * 5.08149 * 10 8 7 34 34 H 1.09005 * 109.46810 * 300.00206 * 11 10 8 35 35 H 1.08998 * 109.47162 * 59.99637 * 11 10 8 36 36 H 1.09005 * 109.46773 * 299.99849 * 12 11 10 37 37 H 1.08998 * 109.47307 * 59.99691 * 12 11 10 38 38 H 0.96998 * 120.00007 * 179.97438 * 16 15 13 39 39 H 1.09003 * 109.67549 * 290.82595 * 21 7 6 40 40 H 1.09004 * 109.75292 * 170.23492 * 21 7 6 41 41 H 1.08998 * 109.46959 * 300.10091 * 24 22 21 42 42 H 1.09002 * 109.46940 * 60.10180 * 24 22 21 43 43 H 1.08995 * 109.47044 * 180.10521 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5353 1.1847 0.0006 5 1 3.8523 0.5698 -0.8418 6 6 4.1606 2.5793 -0.1196 7 7 5.6142 2.4542 0.0708 8 6 6.4786 2.9979 -0.8089 9 8 7.6737 2.9628 -0.5878 10 7 6.0181 3.5807 -1.9336 11 6 6.9599 4.0722 -2.9423 12 6 6.1833 4.6846 -4.1096 13 6 7.1521 5.1909 -5.1470 14 1 8.2154 5.0859 -4.9897 15 6 6.6811 5.7871 -6.2975 16 7 5.3862 5.9145 -6.4894 17 14 7.8820 6.4140 -7.5837 18 1 8.1714 5.3326 -8.5594 19 1 7.2862 7.5745 -8.2933 20 1 9.1430 6.8332 -6.9208 21 6 6.0975 1.7178 1.2510 22 6 5.3771 0.3657 1.3038 23 1 5.6155 -0.1375 2.2408 24 6 5.8313 -0.5016 0.1280 25 8 3.9660 0.5796 1.2222 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 1.6885 1.8465 0.8899 30 1 1.6885 1.8464 -0.8901 31 1 3.9537 2.9903 -1.1077 32 1 3.7446 3.2352 0.6453 33 1 5.0630 3.6746 -2.0751 34 1 7.6051 4.8302 -2.4981 35 1 7.5687 3.2441 -3.3051 36 1 5.5378 3.9269 -4.5539 37 1 5.5747 5.5128 -3.7465 38 1 5.0548 6.3343 -7.2986 39 1 5.8770 2.2867 2.1542 40 1 7.1728 1.5580 1.1706 41 1 5.5926 0.0022 -0.8086 42 1 6.9076 -0.6628 0.1898 43 1 5.3173 -1.4621 0.1651 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334090975.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:26:09 Heat of formation + Delta-G solvation = -116.184370 kcal Electronic energy + Delta-G solvation = -23498.608290 eV Core-core repulsion = 19965.446897 eV Total energy + Delta-G solvation = -3533.161394 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.66364 -38.84098 -37.75128 -35.00670 -34.67302 -33.26608 -32.67632 -30.25723 -29.46141 -27.51241 -26.54638 -25.31574 -24.45466 -22.86289 -21.15737 -20.67209 -19.34605 -18.16410 -17.09767 -16.82654 -16.40688 -16.10036 -15.84083 -15.41369 -15.35301 -14.76724 -14.50833 -14.47904 -14.09706 -13.87742 -13.56814 -13.12519 -12.75033 -12.60347 -12.30049 -12.18533 -12.05818 -11.83286 -11.49740 -11.35111 -11.18007 -11.04920 -10.67008 -10.62228 -10.36442 -10.17819 -9.93649 -9.91744 -9.56620 -9.28481 -8.72660 -8.46859 -8.21774 -6.10885 -4.13499 2.69171 3.28799 3.34031 3.35082 3.39496 3.46653 3.54737 4.16298 4.42292 4.55066 4.67249 4.76286 4.78778 4.92679 4.98273 5.07758 5.09279 5.15401 5.19746 5.26436 5.26564 5.41778 5.47504 5.54665 5.69048 5.73522 5.79838 6.08581 6.19808 6.36853 6.44480 6.74126 6.85656 6.94278 6.99639 7.08487 7.52659 7.60250 7.87989 8.20187 8.31613 8.87332 8.93656 9.51422 11.00801 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.018202 B = 0.003582 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.936813 B = 7814.324767 C = 8958.421103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.070 3.930 4 C 0.076 3.924 5 H 0.078 0.922 6 C 0.086 3.914 7 N -0.635 5.635 8 C 0.705 3.295 9 O -0.591 6.591 10 N -0.738 5.738 11 C 0.139 3.861 12 C 0.013 3.987 13 C -0.521 4.521 14 H 0.060 0.940 15 C 0.059 3.941 16 N -0.895 5.895 17 Si 0.897 3.103 18 H -0.279 1.279 19 H -0.286 1.286 20 H -0.272 1.272 21 C 0.102 3.898 22 C 0.074 3.926 23 H 0.113 0.887 24 C -0.181 4.181 25 O -0.363 6.363 26 H 0.085 0.915 27 H 0.041 0.959 28 H 0.042 0.958 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.391 0.609 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.021 0.979 37 H 0.022 0.978 38 H 0.262 0.738 39 H 0.070 0.930 40 H 0.103 0.897 41 H 0.062 0.938 42 H 0.068 0.932 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.167 -11.017 15.707 21.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.301 6.301 3 C -0.007 4.007 4 C 0.017 3.983 5 H 0.096 0.904 6 C -0.038 4.038 7 N -0.374 5.374 8 C 0.407 3.593 9 O -0.470 6.470 10 N -0.394 5.394 11 C 0.016 3.984 12 C -0.024 4.024 13 C -0.559 4.559 14 H 0.078 0.922 15 C -0.143 4.143 16 N -0.534 5.534 17 Si 0.725 3.275 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.197 1.197 21 C -0.022 4.022 22 C 0.016 3.984 23 H 0.131 0.869 24 C -0.239 4.239 25 O -0.282 6.282 26 H 0.104 0.896 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.110 0.890 32 H 0.096 0.904 33 H 0.227 0.773 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.040 0.960 37 H 0.040 0.960 38 H 0.071 0.929 39 H 0.088 0.912 40 H 0.121 0.879 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.385 -11.169 15.835 21.114 hybrid contribution -0.041 0.769 -1.074 1.321 sum -8.425 -10.401 14.761 19.926 Atomic orbital electron populations 1.22755 0.80931 1.02836 1.00028 1.87935 1.19637 1.27093 1.95415 1.22469 0.91240 0.85635 1.01357 1.22431 0.92891 0.93519 0.89450 0.90386 1.22144 0.81426 0.97014 1.03220 1.47222 1.04845 1.59012 1.26367 1.15915 0.84786 0.78606 0.80012 1.90883 1.13804 1.64967 1.77318 1.45706 1.10768 1.63268 1.19628 1.21621 0.91503 0.97650 0.87590 1.19322 0.95981 0.95957 0.91167 1.21043 0.93143 1.38777 1.02970 0.92202 1.24990 0.95243 0.95784 0.98239 1.69954 1.12264 1.44044 1.27097 0.86508 0.81160 0.78440 0.81430 1.20554 1.21170 1.19703 1.22163 1.01029 0.91766 0.87228 1.22642 0.81099 0.94655 1.00046 0.86890 1.22348 1.02176 1.00211 0.99126 1.88043 1.22153 1.81018 1.36992 0.89606 0.94030 0.93939 0.92157 0.91254 0.89002 0.90405 0.77323 0.92620 0.92794 0.96026 0.95982 0.92858 0.91167 0.87914 0.91936 0.91271 0.91704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.35 16 2 O -0.38 -4.21 10.67 -39.96 -0.43 -4.63 16 3 C 0.07 0.66 5.61 37.15 0.21 0.87 16 4 C 0.08 0.83 2.67 -26.58 -0.07 0.75 16 5 H 0.08 0.93 6.25 -51.93 -0.32 0.61 16 6 C 0.09 0.94 5.92 -3.54 -0.02 0.92 16 7 N -0.63 -8.74 2.54 -177.91 -0.45 -9.19 16 8 C 0.71 12.61 8.31 -86.91 -0.72 11.89 16 9 O -0.59 -12.71 15.85 5.29 0.08 -12.63 16 10 N -0.74 -13.24 5.47 -65.23 -0.36 -13.59 16 11 C 0.14 2.99 5.62 -4.05 -0.02 2.97 16 12 C 0.01 0.33 5.09 -27.89 -0.14 0.18 16 13 C -0.52 -14.39 9.11 -34.44 -0.31 -14.71 16 14 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.89 -25.93 13.29 55.43 0.74 -25.19 16 17 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 21 C 0.10 1.21 6.01 -3.47 -0.02 1.19 16 22 C 0.07 0.78 3.93 -26.57 -0.10 0.67 16 23 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 24 C -0.18 -1.99 8.81 37.16 0.33 -1.67 16 25 O -0.36 -4.29 10.19 -39.96 -0.41 -4.70 16 26 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.04 0.28 8.14 -51.92 -0.42 -0.15 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.09 0.94 5.66 -51.93 -0.29 0.65 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.39 6.08 5.98 -40.82 -0.24 5.84 16 34 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.10 1.34 7.12 -51.93 -0.37 0.97 16 41 H 0.06 0.80 6.11 -51.93 -0.32 0.48 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 347.56 15.07 5.24 5.24 Total: -1.00 -33.17 347.56 -7.48 -40.65 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -7.01 Total: 1.79 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: 0.13 Total: 5.97 kcal Atomic # 7 Polarization: -47.90 SS G_CDS: -0.07 Total: -47.97 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: -0.75 Total: -21.96 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.17 -7.48 -40.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334090975.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.533 kcal (2) G-P(sol) polarization free energy of solvation -33.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds