Wall clock time and date at job start Tue Mar 31 2020 02:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42906 * 113.99954 * 2 1 4 4 C 1.52992 * 109.47193 * 179.97438 * 3 2 1 5 5 H 1.09006 * 109.51669 * 55.09933 * 4 3 2 6 6 C 1.53300 * 109.55717 * 175.22483 * 4 3 2 7 7 N 1.47142 * 108.38746 * 172.24851 * 6 4 3 8 8 C 1.34788 * 120.98161 * 129.48785 * 7 6 4 9 9 O 1.21586 * 119.99876 * 175.00933 * 8 7 6 10 10 N 1.34779 * 119.99798 * 355.01477 * 8 7 6 11 11 C 1.46496 * 120.00085 * 185.08112 * 10 8 7 12 12 C 1.52993 * 109.47362 * 180.02562 * 11 10 8 13 13 C 1.50701 * 109.47352 * 179.97438 * 12 11 10 14 14 H 1.07995 * 119.99994 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00149 * 179.97438 * 13 12 11 16 16 N 1.31518 * 120.00052 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 120.00135 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.46811 * 90.00437 * 17 15 13 19 19 H 1.48498 * 109.46979 * 210.00427 * 17 15 13 20 20 H 1.48503 * 109.46870 * 330.00740 * 17 15 13 21 21 C 1.47258 * 118.06473 * 309.46924 * 7 6 4 22 22 C 1.53301 * 108.32608 * 50.50618 * 21 7 6 23 23 H 1.08997 * 109.51244 * 187.76945 * 22 21 7 24 24 C 1.53005 * 109.51058 * 67.66695 * 22 21 7 25 25 O 1.42959 * 109.26276 * 307.71826 * 22 21 7 26 26 H 1.09002 * 109.47573 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47359 * 300.00204 * 1 2 3 28 28 H 1.09008 * 109.47227 * 60.00347 * 1 2 3 29 29 H 1.08995 * 109.47489 * 59.99449 * 3 2 1 30 30 H 1.09005 * 109.46824 * 299.99680 * 3 2 1 31 31 H 1.09002 * 109.67880 * 291.97877 * 6 4 3 32 32 H 1.09006 * 109.67544 * 52.48961 * 6 4 3 33 33 H 0.97004 * 119.99857 * 5.08149 * 10 8 7 34 34 H 1.09005 * 109.46810 * 300.00206 * 11 10 8 35 35 H 1.08998 * 109.47162 * 59.99637 * 11 10 8 36 36 H 1.09005 * 109.46773 * 299.99849 * 12 11 10 37 37 H 1.08998 * 109.47307 * 59.99691 * 12 11 10 38 38 H 0.96998 * 120.00007 * 179.97438 * 16 15 13 39 39 H 1.09003 * 109.67549 * 290.82595 * 21 7 6 40 40 H 1.09004 * 109.75292 * 170.23492 * 21 7 6 41 41 H 1.08998 * 109.46959 * 300.10091 * 24 22 21 42 42 H 1.09002 * 109.46940 * 60.10180 * 24 22 21 43 43 H 1.08995 * 109.47044 * 180.10521 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5353 1.1847 0.0006 5 1 3.8523 0.5698 -0.8418 6 6 4.1606 2.5793 -0.1196 7 7 5.6142 2.4542 0.0708 8 6 6.4786 2.9979 -0.8089 9 8 7.6737 2.9628 -0.5878 10 7 6.0181 3.5807 -1.9336 11 6 6.9599 4.0722 -2.9423 12 6 6.1833 4.6846 -4.1096 13 6 7.1521 5.1909 -5.1470 14 1 8.2154 5.0859 -4.9897 15 6 6.6811 5.7871 -6.2975 16 7 5.3862 5.9145 -6.4894 17 14 7.8820 6.4140 -7.5837 18 1 8.1714 5.3326 -8.5594 19 1 7.2862 7.5745 -8.2933 20 1 9.1430 6.8332 -6.9208 21 6 6.0975 1.7178 1.2510 22 6 5.3771 0.3657 1.3038 23 1 5.6155 -0.1375 2.2408 24 6 5.8313 -0.5016 0.1280 25 8 3.9660 0.5796 1.2222 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 1.6885 1.8465 0.8899 30 1 1.6885 1.8464 -0.8901 31 1 3.9537 2.9903 -1.1077 32 1 3.7446 3.2352 0.6453 33 1 5.0630 3.6746 -2.0751 34 1 7.6051 4.8302 -2.4981 35 1 7.5687 3.2441 -3.3051 36 1 5.5378 3.9269 -4.5539 37 1 5.5747 5.5128 -3.7465 38 1 5.0548 6.3343 -7.2986 39 1 5.8770 2.2867 2.1542 40 1 7.1728 1.5580 1.1706 41 1 5.5926 0.0022 -0.8086 42 1 6.9076 -0.6628 0.1898 43 1 5.3173 -1.4621 0.1651 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334090975.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:26:08 Heat of formation + Delta-G solvation = -139.420236 kcal Electronic energy + Delta-G solvation = -23499.615873 eV Core-core repulsion = 19965.446897 eV Total energy + Delta-G solvation = -3534.168976 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.79453 -40.01384 -38.53116 -36.69250 -35.86125 -34.84984 -33.95828 -31.63359 -30.83351 -28.29630 -27.71080 -26.40372 -25.96011 -23.81371 -22.90822 -21.91873 -20.45712 -19.42250 -18.51959 -17.99294 -17.59508 -17.14249 -16.96165 -16.61425 -16.43491 -16.21085 -15.73344 -15.48992 -15.43393 -15.03460 -14.91372 -14.51475 -14.26626 -13.73107 -13.37677 -13.28134 -12.99556 -12.95593 -12.89754 -12.57492 -12.50096 -12.37321 -12.24942 -12.08873 -11.72316 -11.64993 -11.42705 -11.18121 -11.08315 -10.60795 -10.60317 -10.16454 -9.46737 -8.24038 -6.34101 1.41743 1.42700 1.48474 1.55169 2.04924 2.40224 2.57734 2.70703 2.97349 3.11017 3.66755 3.83486 3.89010 3.92503 4.09954 4.19237 4.24451 4.40949 4.43009 4.47387 4.50453 4.54581 4.59358 4.61548 4.66331 4.81601 4.84385 4.85740 4.90235 4.93494 5.17403 5.27078 5.35850 5.49491 5.58202 5.75929 5.83857 6.10114 6.16691 6.24761 6.78465 6.89044 7.35174 7.47253 8.87847 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.018202 B = 0.003582 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.936813 B = 7814.324767 C = 8958.421103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.411 6.411 3 C 0.070 3.930 4 C 0.078 3.922 5 H 0.063 0.937 6 C 0.084 3.916 7 N -0.628 5.628 8 C 0.704 3.296 9 O -0.631 6.631 10 N -0.734 5.734 11 C 0.160 3.840 12 C 0.025 3.975 13 C -0.547 4.547 14 H 0.058 0.942 15 C 0.009 3.991 16 N -0.925 5.925 17 Si 0.964 3.036 18 H -0.272 1.272 19 H -0.279 1.279 20 H -0.267 1.267 21 C 0.098 3.902 22 C 0.079 3.921 23 H 0.141 0.859 24 C -0.178 4.178 25 O -0.371 6.371 26 H 0.093 0.907 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.404 0.596 34 H 0.044 0.956 35 H 0.044 0.956 36 H 0.009 0.991 37 H 0.009 0.991 38 H 0.266 0.734 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.039 0.961 42 H 0.070 0.930 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.842 -11.120 16.349 22.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.330 6.330 3 C -0.007 4.007 4 C 0.019 3.981 5 H 0.081 0.919 6 C -0.039 4.039 7 N -0.366 5.366 8 C 0.406 3.594 9 O -0.513 6.513 10 N -0.390 5.390 11 C 0.036 3.964 12 C -0.013 4.013 13 C -0.585 4.585 14 H 0.077 0.923 15 C -0.190 4.190 16 N -0.565 5.565 17 Si 0.789 3.211 18 H -0.198 1.198 19 H -0.205 1.205 20 H -0.191 1.191 21 C -0.024 4.024 22 C 0.021 3.979 23 H 0.158 0.842 24 C -0.235 4.235 25 O -0.290 6.290 26 H 0.112 0.888 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.091 0.909 30 H 0.103 0.897 31 H 0.115 0.885 32 H 0.118 0.882 33 H 0.241 0.759 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.027 0.973 37 H 0.028 0.972 38 H 0.075 0.925 39 H 0.106 0.894 40 H 0.108 0.892 41 H 0.059 0.941 42 H 0.089 0.911 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.116 -11.294 16.510 21.983 hybrid contribution 0.102 0.751 -1.219 1.436 sum -9.013 -10.543 15.291 20.645 Atomic orbital electron populations 1.22924 0.79323 1.03764 1.00996 1.87885 1.21490 1.27994 1.95651 1.22531 0.89956 0.85478 1.02722 1.22421 0.94092 0.92821 0.88718 0.91946 1.22356 0.79472 0.97756 1.04328 1.47234 1.05716 1.57851 1.25785 1.15988 0.84698 0.78539 0.80223 1.90852 1.15732 1.66468 1.78221 1.45399 1.10886 1.63474 1.19281 1.21102 0.91279 0.96733 0.87288 1.19118 0.95382 0.95088 0.91668 1.21448 0.93651 1.39280 1.04125 0.92341 1.25839 0.97004 0.95836 1.00311 1.70050 1.13924 1.44623 1.27890 0.85461 0.78958 0.78041 0.78688 1.19791 1.20479 1.19132 1.22355 1.00535 0.92649 0.86897 1.22732 0.80481 0.93733 1.00971 0.84151 1.22318 1.02415 1.00424 0.98370 1.88044 1.22581 1.81066 1.37270 0.88831 0.92934 0.93049 0.90904 0.89710 0.88513 0.88222 0.75871 0.93776 0.93799 0.97275 0.97238 0.92532 0.89373 0.89225 0.94141 0.91071 0.91046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 113.37 1.25 1.59 16 2 O -0.41 -8.42 10.67 -144.45 -1.54 -9.96 16 3 C 0.07 1.18 5.61 71.98 0.40 1.58 16 4 C 0.08 1.59 2.67 30.69 0.08 1.67 16 5 H 0.06 1.47 6.25 -2.38 -0.01 1.45 16 6 C 0.08 1.69 5.92 86.36 0.51 2.20 16 7 N -0.63 -16.69 2.54 -835.04 -2.12 -18.81 16 8 C 0.70 25.11 8.31 179.05 1.49 26.60 16 9 O -0.63 -27.45 15.85 -3.99 -0.06 -27.51 16 10 N -0.73 -26.36 5.47 -478.54 -2.62 -28.98 16 11 C 0.16 7.00 5.62 86.38 0.49 7.49 16 12 C 0.02 1.25 5.09 29.85 0.15 1.41 16 13 C -0.55 -30.46 9.11 25.60 0.23 -30.23 16 14 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 15 C 0.01 0.50 5.46 84.65 0.46 0.96 16 16 N -0.93 -53.69 13.29 21.45 0.28 -53.41 16 17 Si 0.96 43.41 29.54 68.60 2.03 45.44 16 18 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 19 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 20 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 21 C 0.10 2.21 6.01 86.34 0.52 2.73 16 22 C 0.08 1.52 3.93 30.70 0.12 1.64 16 23 H 0.14 1.97 8.14 -2.39 -0.02 1.95 16 24 C -0.18 -3.79 8.81 71.98 0.63 -3.16 16 25 O -0.37 -8.04 10.19 -144.45 -1.47 -9.51 16 26 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 29 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 31 H 0.10 1.84 5.66 -2.39 -0.01 1.83 16 32 H 0.10 1.64 8.14 -2.38 -0.02 1.62 16 33 H 0.40 12.39 5.98 -92.71 -0.55 11.84 16 34 H 0.04 2.02 8.14 -2.38 -0.02 2.01 16 35 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.01 0.47 8.14 -2.38 -0.02 0.45 16 37 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 39 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.09 2.29 7.12 -2.39 -0.02 2.27 16 41 H 0.04 1.03 6.11 -2.39 -0.01 1.02 16 42 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -70.66 347.56 1.28 -69.38 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: 0.44 Total: 18.86 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: 6.34 Total: 14.49 kcal Atomic # 7 Polarization: -96.74 SS G_CDS: -4.45 Total: -101.20 kcal Atomic # 8 Polarization: -43.90 SS G_CDS: -3.08 Total: -46.98 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -70.66 1.28 -69.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334090975.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.037 kcal (2) G-P(sol) polarization free energy of solvation -70.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds