Wall clock time and date at job start Tue Mar 31 2020 03:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42908 * 113.99182 * 2 1 4 4 C 1.52999 * 109.46782 * 179.97438 * 3 2 1 5 5 O 1.42904 * 109.47438 * 64.99673 * 4 3 2 6 6 C 1.42894 * 114.00145 * 179.97438 * 5 4 3 7 7 H 1.08994 * 109.50143 * 329.93319 * 6 5 4 8 8 C 1.53044 * 109.49472 * 209.84034 * 6 5 4 9 9 C 1.53045 * 109.53676 * 178.68703 * 8 6 5 10 10 C 1.53187 * 109.31467 * 61.36073 * 9 8 6 11 11 N 1.46921 * 108.77861 * 305.36941 * 10 9 8 12 12 C 1.34781 * 120.63001 * 233.63237 * 11 10 9 13 13 O 1.21584 * 120.00002 * 174.74983 * 12 11 10 14 14 N 1.34776 * 119.99863 * 354.74277 * 12 11 10 15 15 C 1.46507 * 119.99829 * 184.98484 * 14 12 11 16 16 C 1.50701 * 109.46946 * 180.02562 * 15 14 12 17 17 H 1.07996 * 119.99990 * 359.97438 * 16 15 14 18 18 C 1.37871 * 119.99588 * 179.97438 * 16 15 14 19 19 N 1.31513 * 120.00550 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99749 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47167 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47269 * 120.00258 * 20 18 16 23 23 H 1.48506 * 109.47128 * 239.99855 * 20 18 16 24 24 C 1.46921 * 118.74119 * 53.60398 * 11 10 9 25 25 H 1.08998 * 109.47279 * 299.99831 * 1 2 3 26 26 H 1.08994 * 109.47138 * 60.00684 * 1 2 3 27 27 H 1.09006 * 109.46377 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47438 * 59.99938 * 3 2 1 29 29 H 1.08998 * 109.47097 * 299.99603 * 3 2 1 30 30 H 1.09002 * 109.47505 * 304.99851 * 4 3 2 31 31 H 1.09002 * 109.47376 * 184.99847 * 4 3 2 32 32 H 1.09004 * 109.45855 * 298.70141 * 8 6 5 33 33 H 1.08994 * 109.46187 * 58.66743 * 8 6 5 34 34 H 1.09008 * 109.49405 * 301.41313 * 9 8 6 35 35 H 1.08996 * 109.49890 * 181.31494 * 9 8 6 36 36 H 1.09002 * 109.58822 * 185.57981 * 10 9 8 37 37 H 1.09003 * 109.58782 * 65.15588 * 10 9 8 38 38 H 0.96993 * 120.00225 * 4.98296 * 14 12 11 39 39 H 1.08999 * 109.47047 * 300.00325 * 15 14 12 40 40 H 1.09006 * 109.46747 * 60.00018 * 15 14 12 41 41 H 0.96998 * 120.00365 * 180.02562 * 19 18 16 42 42 H 1.08997 * 109.59170 * 186.60339 * 24 11 10 43 43 H 1.09007 * 109.58901 * 66.18120 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5353 1.1849 0.0006 5 8 3.9659 0.5795 -1.2201 6 6 5.3822 0.4201 -1.3219 7 1 5.8787 1.2127 -0.7624 8 6 5.8000 0.4933 -2.7924 9 6 7.3204 0.3555 -2.9000 10 6 7.7463 -1.0067 -2.3436 11 7 7.2231 -1.1442 -0.9776 12 6 8.0457 -1.4500 0.0453 13 8 7.6196 -1.4673 1.1839 14 7 9.3407 -1.7367 -0.1940 15 6 10.2086 -2.1750 0.9020 16 6 11.5967 -2.4282 0.3730 17 1 11.8110 -2.2782 -0.6748 18 6 12.5931 -2.8515 1.2267 19 7 12.3321 -3.0347 2.5026 20 14 14.3141 -3.1648 0.5712 21 1 14.3465 -2.8864 -0.8871 22 1 15.2782 -2.2745 1.2662 23 1 14.6857 -4.5820 0.8136 24 6 5.7862 -0.9415 -0.7477 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3632 -1.0278 -0.0005 28 1 1.6884 1.8465 0.8900 29 1 1.6885 1.8464 -0.8900 30 1 3.8508 0.5688 0.8427 31 1 3.9783 2.1769 0.0902 32 1 5.3221 -0.3147 -3.3464 33 1 5.4918 1.4517 -3.2102 34 1 7.7991 1.1488 -2.3258 35 1 7.6195 0.4311 -3.9454 36 1 8.8343 -1.0704 -2.3263 37 1 7.3417 -1.8006 -2.9715 38 1 9.6982 -1.6528 -1.0917 39 1 10.2475 -1.3995 1.6670 40 1 9.8112 -3.0930 1.3351 41 1 13.0332 -3.3322 3.1033 42 1 5.5808 -0.9622 0.3225 43 1 5.2216 -1.7300 -1.2455 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338741103.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:04 Heat of formation + Delta-G solvation = -121.496263 kcal Electronic energy + Delta-G solvation = -23049.498743 eV Core-core repulsion = 19516.107008 eV Total energy + Delta-G solvation = -3533.391735 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.02065 -38.64368 -37.71950 -36.17384 -34.22301 -32.62868 -32.05441 -30.96463 -29.35649 -27.19724 -26.47938 -25.02691 -23.28222 -22.63501 -22.25864 -20.75423 -19.11837 -18.12039 -17.04758 -16.86427 -16.12167 -15.82379 -15.68420 -15.56904 -15.16343 -14.64458 -14.59156 -14.29383 -14.02451 -13.53984 -13.16218 -13.07538 -12.95444 -12.63999 -12.44373 -12.03588 -11.77870 -11.75241 -11.66174 -11.18627 -11.07108 -10.96383 -10.90453 -10.88742 -10.56766 -10.26610 -9.94823 -9.73578 -9.35632 -9.31086 -8.71887 -8.34993 -7.69985 -6.13748 -4.20216 3.06684 3.25043 3.32117 3.35218 3.52774 3.59395 3.91086 4.32821 4.63150 4.72208 4.79656 4.83100 4.89635 4.96693 5.03703 5.08069 5.10049 5.17671 5.22378 5.23365 5.26650 5.42887 5.49529 5.53146 5.60398 5.78196 5.78277 5.85447 5.91657 6.12501 6.16986 6.72012 6.89583 7.11696 7.20280 7.53627 7.56579 7.59714 7.88202 8.04089 8.77853 8.92417 9.34017 9.49531 10.96586 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.029356 B = 0.002996 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.578568 B = 9343.811287 C =10026.844839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.381 6.381 3 C 0.065 3.935 4 C 0.060 3.940 5 O -0.372 6.372 6 C 0.077 3.923 7 H 0.064 0.936 8 C -0.112 4.112 9 C -0.132 4.132 10 C 0.110 3.890 11 N -0.636 5.636 12 C 0.697 3.303 13 O -0.598 6.598 14 N -0.729 5.729 15 C 0.266 3.734 16 C -0.540 4.540 17 H 0.062 0.938 18 C 0.063 3.937 19 N -0.885 5.885 20 Si 0.904 3.096 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.282 1.282 24 C 0.113 3.887 25 H 0.039 0.961 26 H 0.040 0.960 27 H 0.086 0.914 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.067 0.933 38 H 0.386 0.614 39 H 0.025 0.975 40 H 0.024 0.976 41 H 0.265 0.735 42 H 0.092 0.908 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.692 9.786 -11.133 23.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.300 6.300 3 C -0.012 4.012 4 C -0.017 4.017 5 O -0.290 6.290 6 C 0.018 3.982 7 H 0.082 0.918 8 C -0.150 4.150 9 C -0.170 4.170 10 C -0.014 4.014 11 N -0.377 5.377 12 C 0.399 3.601 13 O -0.477 6.477 14 N -0.383 5.383 15 C 0.144 3.856 16 C -0.579 4.579 17 H 0.080 0.920 18 C -0.141 4.141 19 N -0.523 5.523 20 Si 0.731 3.269 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.011 4.011 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.104 0.896 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.085 0.915 38 H 0.221 0.779 39 H 0.043 0.957 40 H 0.042 0.958 41 H 0.075 0.925 42 H 0.111 0.889 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -18.895 9.452 -10.213 23.467 hybrid contribution 1.074 0.197 -0.474 1.190 sum -17.822 9.650 -10.687 22.911 Atomic orbital electron populations 1.22740 0.81256 1.02854 0.99703 1.88002 1.19415 1.27257 1.95328 1.22561 0.92495 0.85484 1.00665 1.22601 0.93091 0.97640 0.88343 1.87932 1.21629 1.81889 1.37586 1.22480 0.81187 0.97347 0.97206 0.91827 1.21549 0.95605 1.02919 0.94918 1.21923 0.95327 0.98068 1.01726 1.21609 0.99534 0.96849 0.83390 1.47222 1.07464 1.76047 1.06938 1.16053 0.81788 0.78337 0.83953 1.90854 1.76055 1.60683 1.20145 1.45880 1.07937 1.70573 1.13904 1.18997 0.87027 0.95176 0.84357 1.21249 0.94080 1.47131 0.95405 0.91959 1.24946 0.99305 0.95077 0.94732 1.69989 1.33648 1.45367 1.03271 0.86362 0.83619 0.77955 0.78957 1.19664 1.20830 1.20809 1.21735 0.80198 0.96193 1.02965 0.94238 0.94166 0.89584 0.91892 0.92546 0.91886 0.91741 0.90898 0.91289 0.91243 0.90139 0.89826 0.91520 0.77935 0.95684 0.95803 0.92526 0.88920 0.91392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.38 -4.42 10.67 -40.08 -0.43 -4.84 16 3 C 0.06 0.60 6.32 37.16 0.23 0.84 16 4 C 0.06 0.64 6.13 37.16 0.23 0.87 16 5 O -0.37 -4.70 9.96 -40.08 -0.40 -5.10 16 6 C 0.08 0.96 2.76 -26.61 -0.07 0.88 16 7 H 0.06 0.82 7.79 -51.93 -0.40 0.41 16 8 C -0.11 -1.16 5.54 -26.69 -0.15 -1.30 16 9 C -0.13 -1.32 6.08 -26.61 -0.16 -1.48 16 10 C 0.11 1.36 6.39 -3.72 -0.02 1.34 16 11 N -0.64 -10.50 2.97 -178.50 -0.53 -11.03 16 12 C 0.70 15.17 8.29 -86.91 -0.72 14.45 16 13 O -0.60 -15.49 15.77 5.29 0.08 -15.41 16 14 N -0.73 -16.18 5.46 -66.41 -0.36 -16.54 16 15 C 0.27 7.25 5.43 -5.19 -0.03 7.22 16 16 C -0.54 -14.85 9.28 -34.44 -0.32 -15.17 16 17 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 18 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 19 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 20 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 21 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 C 0.11 1.72 6.06 -3.71 -0.02 1.70 16 25 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.75 8.02 -51.93 -0.42 0.33 16 31 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.08 1.03 5.65 -51.93 -0.29 0.74 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.39 7.36 5.81 -40.82 -0.24 7.13 16 39 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 42 H 0.09 1.62 6.87 -51.93 -0.36 1.26 16 43 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 351.69 15.07 5.30 5.30 Total: -1.00 -34.32 351.69 -7.80 -42.12 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -7.16 Total: 2.82 kcal Atomic # 6 Polarization: 12.38 SS G_CDS: -0.02 Total: 12.36 kcal Atomic # 7 Polarization: -53.05 SS G_CDS: -0.16 Total: -53.21 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -0.74 Total: -25.35 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.32 -7.80 -42.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338741103.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.379 kcal (2) G-P(sol) polarization free energy of solvation -34.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds