Wall clock time and date at job start Tue Mar 31 2020 03:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42908 * 113.99182 * 2 1 4 4 C 1.52999 * 109.46782 * 179.97438 * 3 2 1 5 5 O 1.42904 * 109.47438 * 64.99673 * 4 3 2 6 6 C 1.42894 * 114.00145 * 179.97438 * 5 4 3 7 7 H 1.08994 * 109.50143 * 329.93319 * 6 5 4 8 8 C 1.53044 * 109.49472 * 209.84034 * 6 5 4 9 9 C 1.53045 * 109.53676 * 178.68703 * 8 6 5 10 10 C 1.53187 * 109.31467 * 61.36073 * 9 8 6 11 11 N 1.46921 * 108.77861 * 305.36941 * 10 9 8 12 12 C 1.34781 * 120.63001 * 233.63237 * 11 10 9 13 13 O 1.21584 * 120.00002 * 174.74983 * 12 11 10 14 14 N 1.34776 * 119.99863 * 354.74277 * 12 11 10 15 15 C 1.46507 * 119.99829 * 184.98484 * 14 12 11 16 16 C 1.50701 * 109.46946 * 180.02562 * 15 14 12 17 17 H 1.07996 * 119.99990 * 359.97438 * 16 15 14 18 18 C 1.37871 * 119.99588 * 179.97438 * 16 15 14 19 19 N 1.31513 * 120.00550 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99749 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47167 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47269 * 120.00258 * 20 18 16 23 23 H 1.48506 * 109.47128 * 239.99855 * 20 18 16 24 24 C 1.46921 * 118.74119 * 53.60398 * 11 10 9 25 25 H 1.08998 * 109.47279 * 299.99831 * 1 2 3 26 26 H 1.08994 * 109.47138 * 60.00684 * 1 2 3 27 27 H 1.09006 * 109.46377 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47438 * 59.99938 * 3 2 1 29 29 H 1.08998 * 109.47097 * 299.99603 * 3 2 1 30 30 H 1.09002 * 109.47505 * 304.99851 * 4 3 2 31 31 H 1.09002 * 109.47376 * 184.99847 * 4 3 2 32 32 H 1.09004 * 109.45855 * 298.70141 * 8 6 5 33 33 H 1.08994 * 109.46187 * 58.66743 * 8 6 5 34 34 H 1.09008 * 109.49405 * 301.41313 * 9 8 6 35 35 H 1.08996 * 109.49890 * 181.31494 * 9 8 6 36 36 H 1.09002 * 109.58822 * 185.57981 * 10 9 8 37 37 H 1.09003 * 109.58782 * 65.15588 * 10 9 8 38 38 H 0.96993 * 120.00225 * 4.98296 * 14 12 11 39 39 H 1.08999 * 109.47047 * 300.00325 * 15 14 12 40 40 H 1.09006 * 109.46747 * 60.00018 * 15 14 12 41 41 H 0.96998 * 120.00365 * 180.02562 * 19 18 16 42 42 H 1.08997 * 109.59170 * 186.60339 * 24 11 10 43 43 H 1.09007 * 109.58901 * 66.18120 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5353 1.1849 0.0006 5 8 3.9659 0.5795 -1.2201 6 6 5.3822 0.4201 -1.3219 7 1 5.8787 1.2127 -0.7624 8 6 5.8000 0.4933 -2.7924 9 6 7.3204 0.3555 -2.9000 10 6 7.7463 -1.0067 -2.3436 11 7 7.2231 -1.1442 -0.9776 12 6 8.0457 -1.4500 0.0453 13 8 7.6196 -1.4673 1.1839 14 7 9.3407 -1.7367 -0.1940 15 6 10.2086 -2.1750 0.9020 16 6 11.5967 -2.4282 0.3730 17 1 11.8110 -2.2782 -0.6748 18 6 12.5931 -2.8515 1.2267 19 7 12.3321 -3.0347 2.5026 20 14 14.3141 -3.1648 0.5712 21 1 14.3465 -2.8864 -0.8871 22 1 15.2782 -2.2745 1.2662 23 1 14.6857 -4.5820 0.8136 24 6 5.7862 -0.9415 -0.7477 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3632 -1.0278 -0.0005 28 1 1.6884 1.8465 0.8900 29 1 1.6885 1.8464 -0.8900 30 1 3.8508 0.5688 0.8427 31 1 3.9783 2.1769 0.0902 32 1 5.3221 -0.3147 -3.3464 33 1 5.4918 1.4517 -3.2102 34 1 7.7991 1.1488 -2.3258 35 1 7.6195 0.4311 -3.9454 36 1 8.8343 -1.0704 -2.3263 37 1 7.3417 -1.8006 -2.9715 38 1 9.6982 -1.6528 -1.0917 39 1 10.2475 -1.3995 1.6670 40 1 9.8112 -3.0930 1.3351 41 1 13.0332 -3.3322 3.1033 42 1 5.5808 -0.9622 0.3225 43 1 5.2216 -1.7300 -1.2455 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338741103.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:03 Heat of formation + Delta-G solvation = -146.893042 kcal Electronic energy + Delta-G solvation = -23050.600030 eV Core-core repulsion = 19516.107008 eV Total energy + Delta-G solvation = -3534.493022 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.46045 -39.75266 -38.67865 -37.33877 -36.22921 -34.46479 -33.45565 -31.92110 -30.41568 -29.11327 -27.14599 -26.40663 -24.58969 -24.09673 -23.29396 -22.02770 -20.72778 -19.57228 -18.17406 -17.85485 -17.73122 -17.32102 -16.85297 -16.52540 -16.41683 -16.16370 -15.91688 -15.36818 -15.18712 -14.81154 -14.71605 -14.45284 -14.11962 -13.91011 -13.75408 -13.56959 -13.16052 -12.85214 -12.75019 -12.73045 -12.39046 -12.24450 -12.02944 -11.98285 -11.86489 -11.55078 -11.44550 -11.18522 -10.81943 -10.77727 -10.61536 -10.05070 -9.39129 -8.28273 -6.45063 1.43743 1.45822 1.58388 1.67065 2.15129 2.38445 2.61784 2.86250 3.06726 3.17686 3.75970 3.79661 3.94964 4.02639 4.10095 4.15698 4.20024 4.40382 4.45971 4.49445 4.53905 4.56985 4.66035 4.68828 4.76619 4.78777 4.86724 4.93218 4.99853 5.10347 5.15048 5.25563 5.32314 5.46181 5.51558 5.67670 5.83953 6.08579 6.14917 6.28002 6.66454 7.15103 7.25102 7.65523 8.84499 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.029356 B = 0.002996 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.578568 B = 9343.811287 C =10026.844839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.418 6.418 3 C 0.065 3.935 4 C 0.052 3.948 5 O -0.379 6.379 6 C 0.083 3.917 7 H 0.057 0.943 8 C -0.106 4.106 9 C -0.123 4.123 10 C 0.099 3.901 11 N -0.624 5.624 12 C 0.692 3.308 13 O -0.649 6.649 14 N -0.721 5.721 15 C 0.285 3.715 16 C -0.552 4.552 17 H 0.085 0.915 18 C 0.003 3.997 19 N -0.932 5.932 20 Si 0.988 3.012 21 H -0.251 1.251 22 H -0.279 1.279 23 H -0.279 1.279 24 C 0.112 3.888 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.041 0.959 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.061 0.939 35 H 0.116 0.884 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.404 0.596 39 H -0.015 1.015 40 H -0.016 1.016 41 H 0.269 0.731 42 H 0.059 0.941 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.408 10.796 -14.395 25.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.338 6.338 3 C -0.012 4.012 4 C -0.024 4.024 5 O -0.298 6.298 6 C 0.024 3.976 7 H 0.075 0.925 8 C -0.144 4.144 9 C -0.161 4.161 10 C -0.023 4.023 11 N -0.364 5.364 12 C 0.393 3.607 13 O -0.532 6.532 14 N -0.377 5.377 15 C 0.161 3.839 16 C -0.590 4.590 17 H 0.103 0.897 18 C -0.197 4.197 19 N -0.570 5.570 20 Si 0.811 3.189 21 H -0.174 1.174 22 H -0.204 1.204 23 H -0.205 1.205 24 C -0.012 4.012 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.108 0.892 28 H 0.103 0.897 29 H 0.087 0.913 30 H 0.059 0.941 31 H 0.103 0.897 32 H 0.098 0.902 33 H 0.107 0.893 34 H 0.080 0.920 35 H 0.135 0.865 36 H 0.103 0.897 37 H 0.108 0.892 38 H 0.242 0.758 39 H 0.003 0.997 40 H 0.002 0.998 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -18.656 10.492 -13.567 25.341 hybrid contribution 0.847 -0.112 0.566 1.025 sum -17.810 10.380 -13.000 24.371 Atomic orbital electron populations 1.22907 0.79516 1.03603 1.00976 1.87947 1.21505 1.28705 1.95623 1.22668 0.91157 0.85045 1.02292 1.22797 0.94586 0.98046 0.86978 1.87927 1.21422 1.82173 1.38256 1.22419 0.81369 0.94948 0.98838 0.92454 1.21556 0.95715 1.04294 0.92811 1.21907 0.94965 0.95787 1.03452 1.22021 0.99731 0.99519 0.80987 1.47221 1.07352 1.74261 1.07520 1.16247 0.81911 0.78139 0.84356 1.90815 1.76912 1.62673 1.22815 1.45465 1.07892 1.70789 1.13558 1.18436 0.88367 0.92072 0.84978 1.21600 0.93825 1.47082 0.96520 0.89748 1.26093 1.04466 0.94346 0.94784 1.70155 1.35509 1.46263 1.05101 0.85070 0.76954 0.77700 0.79218 1.17450 1.20443 1.20463 1.21841 0.79351 0.98628 1.01396 0.92850 0.92936 0.89233 0.89735 0.91278 0.94088 0.89709 0.90189 0.89349 0.92009 0.86548 0.89715 0.89241 0.75823 0.99735 0.99827 0.92228 0.92233 0.90586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 113.37 1.25 1.62 16 2 O -0.42 -9.51 10.67 -144.34 -1.54 -11.05 16 3 C 0.06 1.13 6.32 71.98 0.45 1.58 16 4 C 0.05 1.11 6.13 71.98 0.44 1.55 16 5 O -0.38 -9.25 9.96 -144.34 -1.44 -10.69 16 6 C 0.08 2.00 2.76 30.67 0.08 2.09 16 7 H 0.06 1.45 7.79 -2.39 -0.02 1.43 16 8 C -0.11 -1.86 5.54 30.62 0.17 -1.69 16 9 C -0.12 -2.04 6.08 30.67 0.19 -1.85 16 10 C 0.10 2.23 6.39 86.36 0.55 2.78 16 11 N -0.62 -20.58 2.97 -836.93 -2.49 -23.07 16 12 C 0.69 31.22 8.29 179.05 1.49 32.70 16 13 O -0.65 -35.80 15.77 -3.98 -0.06 -35.86 16 14 N -0.72 -32.77 5.46 -482.27 -2.63 -35.41 16 15 C 0.28 16.28 5.43 85.63 0.47 16.75 16 16 C -0.55 -30.54 9.28 25.60 0.24 -30.31 16 17 H 0.08 4.19 7.60 -2.91 -0.02 4.17 16 18 C 0.00 0.14 5.46 84.65 0.46 0.61 16 19 N -0.93 -57.01 13.29 21.44 0.28 -56.72 16 20 Si 0.99 42.52 29.54 68.60 2.03 44.55 16 21 H -0.25 -9.90 7.11 99.48 0.71 -9.19 16 22 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 23 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 24 C 0.11 3.44 6.06 86.36 0.52 3.96 16 25 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 28 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.04 1.03 8.02 -2.39 -0.02 1.01 16 31 H 0.08 1.42 8.09 -2.39 -0.02 1.40 16 32 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 33 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 35 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.08 1.89 5.65 -2.39 -0.01 1.88 16 37 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.40 15.15 5.81 -92.71 -0.54 14.61 16 39 H -0.02 -0.99 8.14 -2.39 -0.02 -1.00 16 40 H -0.02 -1.04 8.14 -2.38 -0.02 -1.06 16 41 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 42 H 0.06 2.23 6.87 -2.39 -0.02 2.21 16 43 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 Total: -1.00 -78.47 351.69 0.91 -77.55 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: 0.45 Total: 20.90 kcal Atomic # 6 Polarization: 23.49 SS G_CDS: 6.31 Total: 29.80 kcal Atomic # 7 Polarization: -110.37 SS G_CDS: -4.83 Total: -115.20 kcal Atomic # 8 Polarization: -54.56 SS G_CDS: -3.04 Total: -57.60 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -78.47 0.91 -77.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338741103.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.339 kcal (2) G-P(sol) polarization free energy of solvation -78.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds