Wall clock time and date at job start Tue Mar 31 2020 02:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.47296 * 2 1 4 4 O 1.42901 * 109.46853 * 240.00228 * 2 1 3 5 5 C 1.53003 * 109.47159 * 120.00687 * 2 1 3 6 6 C 1.52999 * 109.47094 * 186.87867 * 5 2 1 7 7 H 1.09003 * 109.67552 * 58.68630 * 6 5 2 8 8 C 1.53298 * 109.67983 * 298.17246 * 6 5 2 9 9 O 1.42976 * 109.21135 * 188.01410 * 8 6 5 10 10 C 1.42956 * 114.20328 * 62.52490 * 9 8 6 11 11 C 1.53299 * 109.22143 * 297.43227 * 10 9 8 12 12 N 1.47151 * 109.68171 * 179.20504 * 6 5 2 13 13 C 1.34772 * 120.98337 * 350.23726 * 12 6 5 14 14 O 1.21592 * 119.99782 * 5.87398 * 13 12 6 15 15 N 1.34779 * 120.00234 * 185.86629 * 13 12 6 16 16 C 1.46497 * 119.99996 * 175.05107 * 15 13 12 17 17 C 1.52995 * 109.47042 * 180.02562 * 16 15 13 18 18 C 1.50699 * 109.47286 * 180.02562 * 17 16 15 19 19 H 1.08007 * 119.99952 * 359.97438 * 18 17 16 20 20 C 1.37881 * 120.00055 * 179.97438 * 18 17 16 21 21 N 1.31507 * 120.00097 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99919 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47059 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47213 * 119.99857 * 22 20 18 25 25 H 1.48500 * 109.47175 * 240.00355 * 22 20 18 26 26 H 1.09003 * 109.47013 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46541 * 299.99364 * 1 2 3 28 28 H 1.09000 * 109.46798 * 59.99199 * 1 2 3 29 29 H 0.96696 * 114.00032 * 300.00527 * 4 2 1 30 30 H 1.08999 * 109.47064 * 306.87637 * 5 2 1 31 31 H 1.08999 * 109.46920 * 66.87639 * 5 2 1 32 32 H 1.08996 * 109.51304 * 307.89501 * 8 6 5 33 33 H 1.09002 * 109.51519 * 68.05022 * 8 6 5 34 34 H 1.09000 * 109.51707 * 177.51384 * 10 9 8 35 35 H 1.08996 * 109.55954 * 57.38164 * 10 9 8 36 36 H 1.08996 * 109.68239 * 292.58103 * 11 10 9 37 37 H 1.09000 * 109.71166 * 172.03945 * 11 10 9 38 38 H 0.96999 * 119.99771 * 355.05780 * 15 13 12 39 39 H 1.09007 * 109.47221 * 300.00561 * 16 15 13 40 40 H 1.08995 * 109.47143 * 60.00295 * 16 15 13 41 41 H 1.08997 * 109.47317 * 300.00297 * 17 16 15 42 42 H 1.09001 * 109.47024 * 60.00333 * 17 16 15 43 43 H 0.97003 * 120.00442 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0401 -0.7214 1.2492 6 6 3.5603 -0.5735 1.3386 7 1 3.8247 0.4833 1.3748 8 6 4.2154 -1.2281 0.1169 9 8 5.6333 -1.2508 0.2990 10 6 6.0680 -2.0264 1.4185 11 6 5.5077 -1.4118 2.7063 12 7 4.0537 -1.2497 2.5488 13 6 3.1992 -1.7065 3.4855 14 8 2.0001 -1.6593 3.2894 15 7 3.6737 -2.2160 4.6396 16 6 2.7457 -2.6122 5.7016 17 6 3.5366 -3.1538 6.8941 18 6 2.5820 -3.5620 7.9864 19 1 1.5176 -3.4463 7.8445 20 6 3.0675 -4.0833 9.1669 21 7 4.3635 -4.2247 9.3396 22 14 1.8841 -4.5899 10.5207 23 1 0.4893 -4.3317 10.0811 24 1 2.0527 -6.0367 10.8096 25 1 2.1695 -3.8035 11.7476 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3632 0.5137 0.8900 28 1 -0.3633 0.5140 -0.8899 29 1 1.7209 -1.5951 -1.2330 30 1 1.5798 -0.2836 2.1349 31 1 1.7807 -1.7784 1.1896 32 1 3.8464 -2.2479 0.0086 33 1 3.9717 -0.6550 -0.7777 34 1 7.1572 -2.0276 1.4597 35 1 5.7064 -3.0495 1.3161 36 1 5.9688 -0.4396 2.8800 37 1 5.7143 -2.0719 3.5488 38 1 4.6296 -2.3201 4.7669 39 1 2.1622 -1.7467 6.0159 40 1 2.0752 -3.3861 5.3282 41 1 4.1203 -4.0191 6.5801 42 1 4.2068 -2.3795 7.2674 43 1 4.7051 -4.5910 10.1703 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344377369.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:28:48 Heat of formation + Delta-G solvation = -116.034229 kcal Electronic energy + Delta-G solvation = -23747.666027 eV Core-core repulsion = 20214.511144 eV Total energy + Delta-G solvation = -3533.154883 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.73219 -38.46945 -37.82857 -35.20641 -34.63200 -33.25804 -32.36232 -30.95550 -29.66985 -28.05315 -26.19521 -24.78515 -23.42989 -22.19015 -21.64959 -20.83811 -19.59093 -17.92172 -16.65459 -16.62573 -16.41199 -16.01830 -15.69075 -15.46214 -15.16335 -14.97378 -14.56007 -14.47318 -13.95661 -13.69039 -13.21021 -12.95147 -12.84153 -12.61085 -12.31859 -12.10776 -11.86899 -11.66753 -11.28917 -11.17228 -11.10714 -11.03789 -10.79425 -10.62829 -10.40400 -10.27679 -10.11033 -9.65979 -9.34729 -8.96380 -8.62242 -8.46850 -8.20908 -6.12136 -4.14866 2.72604 3.26429 3.34180 3.39190 3.45087 3.70537 4.08573 4.26081 4.41889 4.57758 4.75545 4.83164 4.90868 4.97344 5.03116 5.07342 5.16007 5.25187 5.35872 5.44441 5.52052 5.62820 5.64170 5.78152 5.85513 5.97059 6.15687 6.22081 6.33189 6.35096 6.63420 6.72576 6.96430 7.00213 7.10201 7.44323 7.51738 7.59049 7.86725 8.20192 8.31344 8.87936 8.93331 9.50151 10.99569 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.022767 B = 0.003525 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.533511 B = 7941.668815 C = 9014.779231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.090 3.910 3 H 0.096 0.904 4 O -0.567 6.567 5 C -0.138 4.138 6 C 0.136 3.864 7 H 0.073 0.927 8 C 0.047 3.953 9 O -0.383 6.383 10 C 0.047 3.953 11 C 0.077 3.923 12 N -0.638 5.638 13 C 0.703 3.297 14 O -0.588 6.588 15 N -0.739 5.739 16 C 0.140 3.860 17 C 0.013 3.987 18 C -0.520 4.520 19 H 0.060 0.940 20 C 0.059 3.941 21 N -0.894 5.894 22 Si 0.897 3.103 23 H -0.271 1.271 24 H -0.283 1.283 25 H -0.283 1.283 26 H 0.058 0.942 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.374 0.626 30 H 0.109 0.891 31 H 0.077 0.923 32 H 0.049 0.951 33 H 0.128 0.872 34 H 0.104 0.896 35 H 0.055 0.945 36 H 0.075 0.925 37 H 0.090 0.910 38 H 0.391 0.609 39 H 0.053 0.947 40 H 0.054 0.946 41 H 0.021 0.979 42 H 0.021 0.979 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.991 6.905 -19.043 20.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.031 3.969 3 H 0.113 0.887 4 O -0.374 6.374 5 C -0.176 4.176 6 C 0.033 3.967 7 H 0.091 0.909 8 C -0.030 4.030 9 O -0.302 6.302 10 C -0.031 4.031 11 C -0.047 4.047 12 N -0.377 5.377 13 C 0.406 3.594 14 O -0.468 6.468 15 N -0.394 5.394 16 C 0.017 3.983 17 C -0.025 4.025 18 C -0.559 4.559 19 H 0.078 0.922 20 C -0.143 4.143 21 N -0.533 5.533 22 Si 0.724 3.276 23 H -0.196 1.196 24 H -0.209 1.209 25 H -0.209 1.209 26 H 0.077 0.923 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.222 0.778 30 H 0.127 0.873 31 H 0.096 0.904 32 H 0.067 0.933 33 H 0.146 0.854 34 H 0.122 0.878 35 H 0.073 0.927 36 H 0.094 0.906 37 H 0.108 0.892 38 H 0.226 0.774 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.040 0.960 42 H 0.040 0.960 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.611 7.551 -19.225 20.664 hybrid contribution -0.406 -1.079 1.412 1.823 sum 0.205 6.472 -17.813 18.953 Atomic orbital electron populations 1.22399 0.96190 1.02653 1.02431 1.22209 0.93289 0.96716 0.84660 0.88655 1.86508 1.76501 1.29338 1.45015 1.22858 0.93063 1.02900 0.98751 1.21737 0.95274 0.96019 0.83715 0.90943 1.23515 0.79981 1.00923 0.98541 1.87968 1.22720 1.71815 1.47669 1.22946 1.00120 0.94447 0.85568 1.22317 0.81144 1.02166 0.99106 1.47398 1.05508 1.62971 1.21850 1.16017 0.84945 0.78347 0.80134 1.90875 1.13665 1.63136 1.79133 1.45811 1.10887 1.67092 1.15631 1.21593 0.91815 0.98633 0.86239 1.19326 0.95889 0.96358 0.90916 1.21079 0.93273 1.42027 0.99523 0.92175 1.24997 0.95209 0.95550 0.98543 1.69960 1.11914 1.45348 1.26088 0.86457 0.81249 0.78206 0.81657 1.19570 1.20923 1.20927 0.92278 0.91430 0.92205 0.77844 0.87276 0.90410 0.93266 0.85427 0.87807 0.92709 0.90633 0.89210 0.77384 0.92839 0.92717 0.96037 0.96023 0.92890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.59 9.53 37.16 0.35 -1.24 16 2 C 0.09 0.85 3.50 -26.73 -0.09 0.76 16 3 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 4 O -0.57 -5.07 10.07 -35.23 -0.35 -5.42 16 5 C -0.14 -1.67 2.97 -26.73 -0.08 -1.75 16 6 C 0.14 1.65 3.18 -67.42 -0.21 1.44 16 7 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 8 C 0.05 0.52 5.17 37.31 0.19 0.71 16 9 O -0.38 -4.54 10.74 -35.23 -0.38 -4.92 16 10 C 0.05 0.47 6.99 37.31 0.26 0.73 16 11 C 0.08 0.84 6.56 -3.53 -0.02 0.82 16 12 N -0.64 -8.71 3.02 -170.43 -0.51 -9.23 16 13 C 0.70 12.08 8.23 -86.92 -0.72 11.36 16 14 O -0.59 -11.44 11.90 5.28 0.06 -11.38 16 15 N -0.74 -13.04 5.46 -65.23 -0.36 -13.39 16 16 C 0.14 2.96 5.62 -4.05 -0.02 2.94 16 17 C 0.01 0.31 5.09 -27.89 -0.14 0.17 16 18 C -0.52 -14.32 9.11 -34.44 -0.31 -14.63 16 19 H 0.06 1.63 7.74 -52.48 -0.41 1.22 16 20 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 21 N -0.89 -25.92 13.29 55.43 0.74 -25.18 16 22 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 23 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.37 2.42 9.04 45.56 0.41 2.83 16 30 H 0.11 1.62 6.21 -51.93 -0.32 1.30 16 31 H 0.08 1.07 7.32 -51.93 -0.38 0.69 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.13 1.33 5.95 -51.93 -0.31 1.02 16 34 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.09 0.93 5.79 -51.93 -0.30 0.62 16 38 H 0.39 6.09 6.04 -40.82 -0.25 5.85 16 39 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 41 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 338.98 15.07 5.11 5.11 Total: -1.00 -31.59 338.98 -7.79 -39.38 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -6.18 Total: 5.99 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: -0.89 Total: 2.84 kcal Atomic # 7 Polarization: -47.66 SS G_CDS: -0.13 Total: -47.80 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: -0.67 Total: -21.72 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.59 -7.79 -39.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344377369.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.653 kcal (2) G-P(sol) polarization free energy of solvation -31.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds