Wall clock time and date at job start Tue Mar 31 2020 02:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.47296 * 2 1 4 4 O 1.42901 * 109.46853 * 240.00228 * 2 1 3 5 5 C 1.53003 * 109.47159 * 120.00687 * 2 1 3 6 6 C 1.52999 * 109.47094 * 186.87867 * 5 2 1 7 7 H 1.09003 * 109.67552 * 58.68630 * 6 5 2 8 8 C 1.53298 * 109.67983 * 298.17246 * 6 5 2 9 9 O 1.42976 * 109.21135 * 188.01410 * 8 6 5 10 10 C 1.42956 * 114.20328 * 62.52490 * 9 8 6 11 11 C 1.53299 * 109.22143 * 297.43227 * 10 9 8 12 12 N 1.47151 * 109.68171 * 179.20504 * 6 5 2 13 13 C 1.34772 * 120.98337 * 350.23726 * 12 6 5 14 14 O 1.21592 * 119.99782 * 5.87398 * 13 12 6 15 15 N 1.34779 * 120.00234 * 185.86629 * 13 12 6 16 16 C 1.46497 * 119.99996 * 175.05107 * 15 13 12 17 17 C 1.52995 * 109.47042 * 180.02562 * 16 15 13 18 18 C 1.50699 * 109.47286 * 180.02562 * 17 16 15 19 19 H 1.08007 * 119.99952 * 359.97438 * 18 17 16 20 20 C 1.37881 * 120.00055 * 179.97438 * 18 17 16 21 21 N 1.31507 * 120.00097 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99919 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47059 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47213 * 119.99857 * 22 20 18 25 25 H 1.48500 * 109.47175 * 240.00355 * 22 20 18 26 26 H 1.09003 * 109.47013 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46541 * 299.99364 * 1 2 3 28 28 H 1.09000 * 109.46798 * 59.99199 * 1 2 3 29 29 H 0.96696 * 114.00032 * 300.00527 * 4 2 1 30 30 H 1.08999 * 109.47064 * 306.87637 * 5 2 1 31 31 H 1.08999 * 109.46920 * 66.87639 * 5 2 1 32 32 H 1.08996 * 109.51304 * 307.89501 * 8 6 5 33 33 H 1.09002 * 109.51519 * 68.05022 * 8 6 5 34 34 H 1.09000 * 109.51707 * 177.51384 * 10 9 8 35 35 H 1.08996 * 109.55954 * 57.38164 * 10 9 8 36 36 H 1.08996 * 109.68239 * 292.58103 * 11 10 9 37 37 H 1.09000 * 109.71166 * 172.03945 * 11 10 9 38 38 H 0.96999 * 119.99771 * 355.05780 * 15 13 12 39 39 H 1.09007 * 109.47221 * 300.00561 * 16 15 13 40 40 H 1.08995 * 109.47143 * 60.00295 * 16 15 13 41 41 H 1.08997 * 109.47317 * 300.00297 * 17 16 15 42 42 H 1.09001 * 109.47024 * 60.00333 * 17 16 15 43 43 H 0.97003 * 120.00442 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0401 -0.7214 1.2492 6 6 3.5603 -0.5735 1.3386 7 1 3.8247 0.4833 1.3748 8 6 4.2154 -1.2281 0.1169 9 8 5.6333 -1.2508 0.2990 10 6 6.0680 -2.0264 1.4185 11 6 5.5077 -1.4118 2.7063 12 7 4.0537 -1.2497 2.5488 13 6 3.1992 -1.7065 3.4855 14 8 2.0001 -1.6593 3.2894 15 7 3.6737 -2.2160 4.6396 16 6 2.7457 -2.6122 5.7016 17 6 3.5366 -3.1538 6.8941 18 6 2.5820 -3.5620 7.9864 19 1 1.5176 -3.4463 7.8445 20 6 3.0675 -4.0833 9.1669 21 7 4.3635 -4.2247 9.3396 22 14 1.8841 -4.5899 10.5207 23 1 0.4893 -4.3317 10.0811 24 1 2.0527 -6.0367 10.8096 25 1 2.1695 -3.8035 11.7476 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3632 0.5137 0.8900 28 1 -0.3633 0.5140 -0.8899 29 1 1.7209 -1.5951 -1.2330 30 1 1.5798 -0.2836 2.1349 31 1 1.7807 -1.7784 1.1896 32 1 3.8464 -2.2479 0.0086 33 1 3.9717 -0.6550 -0.7777 34 1 7.1572 -2.0276 1.4597 35 1 5.7064 -3.0495 1.3161 36 1 5.9688 -0.4396 2.8800 37 1 5.7143 -2.0719 3.5488 38 1 4.6296 -2.3201 4.7669 39 1 2.1622 -1.7467 6.0159 40 1 2.0752 -3.3861 5.3282 41 1 4.1203 -4.0191 6.5801 42 1 4.2068 -2.3795 7.2674 43 1 4.7051 -4.5910 10.1703 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344377369.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:28:47 Heat of formation + Delta-G solvation = -139.483619 kcal Electronic energy + Delta-G solvation = -23748.682869 eV Core-core repulsion = 20214.511144 eV Total energy + Delta-G solvation = -3534.171725 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.88519 -39.60607 -38.63761 -36.76738 -35.79241 -34.98055 -33.60800 -31.77473 -31.37927 -29.16767 -27.13540 -26.62956 -24.38181 -23.46758 -22.78919 -22.25435 -20.85436 -19.08720 -18.49051 -17.59961 -17.55217 -17.02305 -16.89269 -16.50185 -16.36085 -16.21021 -15.91757 -15.68794 -15.35088 -14.98364 -14.31511 -14.28120 -14.24978 -13.77403 -13.48624 -13.19852 -12.96756 -12.92858 -12.71119 -12.55146 -12.48773 -12.26322 -12.20307 -12.00613 -11.68832 -11.58246 -11.40202 -11.23730 -10.96644 -10.61528 -10.22357 -10.00165 -9.41306 -8.24910 -6.35144 1.40784 1.41568 1.52039 1.56591 2.09156 2.39786 2.86805 2.90593 3.10146 3.46345 3.68012 3.87007 3.94096 4.01709 4.13409 4.17857 4.18618 4.34716 4.46509 4.49438 4.50927 4.59467 4.70578 4.79352 4.84773 4.88896 4.96004 4.97397 5.21799 5.23347 5.29510 5.34647 5.52011 5.57552 5.61221 5.77687 5.87380 6.13910 6.16094 6.78117 6.81700 6.93766 7.34365 7.54059 8.87217 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.022767 B = 0.003525 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.533511 B = 7941.668815 C = 9014.779231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.102 3.898 3 H 0.103 0.897 4 O -0.569 6.569 5 C -0.126 4.126 6 C 0.132 3.868 7 H 0.079 0.921 8 C 0.058 3.942 9 O -0.393 6.393 10 C 0.048 3.952 11 C 0.070 3.930 12 N -0.633 5.633 13 C 0.700 3.300 14 O -0.615 6.615 15 N -0.737 5.737 16 C 0.162 3.838 17 C 0.024 3.976 18 C -0.545 4.545 19 H 0.059 0.941 20 C 0.008 3.992 21 N -0.926 5.926 22 Si 0.965 3.035 23 H -0.265 1.265 24 H -0.277 1.277 25 H -0.277 1.277 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.071 0.929 29 H 0.385 0.615 30 H 0.080 0.920 31 H 0.058 0.942 32 H 0.047 0.953 33 H 0.137 0.863 34 H 0.132 0.868 35 H 0.052 0.948 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.401 0.599 39 H 0.044 0.956 40 H 0.044 0.956 41 H 0.007 0.993 42 H 0.007 0.993 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.211 7.179 -19.869 21.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.043 3.957 3 H 0.121 0.879 4 O -0.377 6.377 5 C -0.164 4.164 6 C 0.028 3.972 7 H 0.097 0.903 8 C -0.019 4.019 9 O -0.312 6.312 10 C -0.029 4.029 11 C -0.052 4.052 12 N -0.372 5.372 13 C 0.402 3.598 14 O -0.497 6.497 15 N -0.394 5.394 16 C 0.038 3.962 17 C -0.014 4.014 18 C -0.583 4.583 19 H 0.077 0.923 20 C -0.191 4.191 21 N -0.566 5.566 22 Si 0.789 3.211 23 H -0.190 1.190 24 H -0.202 1.202 25 H -0.202 1.202 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.235 0.765 30 H 0.098 0.902 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.155 0.845 34 H 0.150 0.850 35 H 0.070 0.930 36 H 0.107 0.893 37 H 0.113 0.887 38 H 0.238 0.762 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.026 0.974 42 H 0.026 0.974 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.867 7.832 -20.092 21.582 hybrid contribution -0.428 -1.152 1.616 2.030 sum 0.439 6.680 -18.476 19.652 Atomic orbital electron populations 1.22372 0.95753 1.02611 1.02676 1.22042 0.93512 0.96638 0.83543 0.87909 1.86481 1.76578 1.30334 1.44281 1.22617 0.93053 1.01701 0.98989 1.21936 0.95331 0.96362 0.83527 0.90264 1.23444 0.79712 1.00775 0.97998 1.87960 1.22850 1.72121 1.48259 1.23077 1.01657 0.93847 0.84316 1.22568 0.79355 1.03221 1.00094 1.47464 1.06414 1.61947 1.21332 1.16134 0.85008 0.78335 0.80362 1.90880 1.15033 1.64041 1.79708 1.45536 1.10919 1.67568 1.15331 1.21053 0.91478 0.97654 0.85990 1.19123 0.95326 0.95285 0.91623 1.21481 0.93758 1.42386 1.00721 0.92281 1.25860 0.96909 0.95400 1.00947 1.70057 1.13607 1.45967 1.26963 0.85398 0.79144 0.77986 0.78529 1.18951 1.20232 1.20240 0.92510 0.92081 0.91009 0.76532 0.90187 0.92313 0.93467 0.84514 0.85037 0.93002 0.89317 0.88733 0.76172 0.93789 0.93792 0.97448 0.97433 0.92540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.99 9.53 71.98 0.69 -2.30 16 2 C 0.10 1.81 3.50 30.60 0.11 1.92 16 3 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 4 O -0.57 -9.13 10.07 -148.98 -1.50 -10.63 16 5 C -0.13 -3.02 2.97 30.59 0.09 -2.93 16 6 C 0.13 3.05 3.18 44.97 0.14 3.19 16 7 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 8 C 0.06 1.17 5.17 72.08 0.37 1.54 16 9 O -0.39 -8.42 10.74 -148.98 -1.60 -10.02 16 10 C 0.05 0.86 6.99 72.08 0.50 1.36 16 11 C 0.07 1.42 6.56 86.36 0.57 1.99 16 12 N -0.63 -16.80 3.02 -811.38 -2.45 -19.25 16 13 C 0.70 24.07 8.23 179.06 1.47 25.55 16 14 O -0.62 -24.40 11.90 -4.01 -0.05 -24.44 16 15 N -0.74 -26.12 5.46 -478.54 -2.61 -28.74 16 16 C 0.16 7.00 5.62 86.38 0.49 7.48 16 17 C 0.02 1.20 5.09 29.85 0.15 1.35 16 18 C -0.54 -30.29 9.11 25.60 0.23 -30.05 16 19 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 20 C 0.01 0.42 5.46 84.66 0.46 0.89 16 21 N -0.93 -53.90 13.29 21.45 0.28 -53.61 16 22 Si 0.96 43.32 29.54 68.60 2.03 45.35 16 23 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 24 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 25 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 26 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.39 4.36 9.04 -74.06 -0.67 3.69 16 30 H 0.08 2.44 6.21 -2.39 -0.01 2.42 16 31 H 0.06 1.63 7.32 -2.39 -0.02 1.61 16 32 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.14 2.54 5.95 -2.39 -0.01 2.53 16 34 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.09 1.60 8.14 -2.39 -0.02 1.59 16 37 H 0.09 1.82 5.79 -2.39 -0.01 1.80 16 38 H 0.40 12.42 6.04 -92.71 -0.56 11.86 16 39 H 0.04 1.97 8.14 -2.38 -0.02 1.95 16 40 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 42 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 43 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 Total: -1.00 -67.03 338.98 -0.84 -67.87 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: -0.22 Total: 23.47 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: 5.28 Total: 9.99 kcal Atomic # 7 Polarization: -96.82 SS G_CDS: -4.78 Total: -101.60 kcal Atomic # 8 Polarization: -41.94 SS G_CDS: -3.15 Total: -45.09 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -67.03 -0.84 -67.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344377369.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.610 kcal (2) G-P(sol) polarization free energy of solvation -67.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds