Wall clock time and date at job start Tue Mar 31 2020 02:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08991 * 109.47659 * 2 1 4 4 O 1.42907 * 109.46791 * 239.99871 * 2 1 3 5 5 C 1.50704 * 109.47301 * 120.00552 * 2 1 3 6 6 O 1.21277 * 120.00414 * 104.08086 * 5 2 1 7 7 N 1.34775 * 119.99458 * 284.08071 * 5 2 1 8 8 C 1.46497 * 120.00065 * 5.22596 * 7 5 2 9 9 C 1.50700 * 109.47570 * 95.84168 * 8 7 5 10 10 H 1.08000 * 119.99510 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00517 * 180.02562 * 9 8 7 12 12 N 1.31517 * 119.99669 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00373 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47282 * 89.99609 * 13 11 9 15 15 H 1.48495 * 109.47262 * 209.99786 * 13 11 9 16 16 H 1.48503 * 109.47000 * 329.99922 * 13 11 9 17 17 C 1.46503 * 119.99887 * 185.22263 * 7 5 2 18 18 C 1.53001 * 109.47056 * 89.99990 * 17 7 5 19 19 N 1.46894 * 109.47045 * 180.02562 * 18 17 7 20 20 C 1.47022 * 111.00090 * 293.63422 * 19 18 17 21 21 C 1.53092 * 109.25822 * 177.60688 * 20 19 18 22 22 O 1.43018 * 109.25792 * 56.85471 * 21 20 19 23 23 C 1.43012 * 113.73499 * 301.32467 * 22 21 20 24 24 C 1.47017 * 111.00187 * 170.00132 * 19 18 17 25 25 H 1.08998 * 109.47122 * 186.42061 * 1 2 3 26 26 H 1.08992 * 109.47528 * 66.41355 * 1 2 3 27 27 H 1.09005 * 109.46735 * 306.41678 * 1 2 3 28 28 H 0.96695 * 113.99903 * 300.00315 * 4 2 1 29 29 H 1.09004 * 109.46979 * 215.83948 * 8 7 5 30 30 H 1.08996 * 109.47588 * 335.83120 * 8 7 5 31 31 H 0.97001 * 120.00009 * 180.02562 * 12 11 9 32 32 H 1.08996 * 109.47348 * 210.00409 * 17 7 5 33 33 H 1.09000 * 109.47093 * 330.00207 * 17 7 5 34 34 H 1.08994 * 109.47051 * 299.99978 * 18 17 7 35 35 H 1.09000 * 109.46992 * 60.00156 * 18 17 7 36 36 H 1.09003 * 109.50303 * 297.54269 * 20 19 18 37 37 H 1.09001 * 109.50627 * 57.67576 * 20 19 18 38 38 H 1.08996 * 109.51121 * 296.91112 * 21 20 19 39 39 H 1.09003 * 109.53993 * 176.80195 * 21 20 19 40 40 H 1.09006 * 109.50671 * 298.73842 * 23 22 21 41 41 H 1.09001 * 109.54241 * 178.62991 * 23 22 21 42 42 H 1.08996 * 109.50339 * 302.32473 * 24 19 18 43 43 H 1.08999 * 109.50556 * 62.41021 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0324 -0.7105 1.2304 6 8 2.4754 -1.8360 1.1424 7 7 1.9892 -0.0951 2.4287 8 6 1.3505 1.2172 2.5556 9 6 -0.0727 1.0405 3.0185 10 1 -0.4626 0.0498 3.1996 11 6 -0.8775 2.1436 3.2098 12 7 -0.4028 3.3501 2.9887 13 14 -2.6418 1.9246 3.7829 14 1 -2.6862 1.9441 5.2671 15 1 -3.4768 3.0300 3.2481 16 1 -3.1650 0.6255 3.2891 17 6 2.5811 -0.7385 3.6043 18 6 4.0478 -0.3214 3.7297 19 7 4.6414 -0.9670 4.9081 20 6 4.0338 -0.4616 6.1478 21 6 4.6374 -1.2019 7.3442 22 8 6.0582 -1.0385 7.3320 23 6 6.6829 -1.5206 6.1393 24 6 6.0999 -0.7838 4.9306 25 1 -0.3633 -1.0212 0.1149 26 1 -0.3634 0.4112 -0.9417 27 1 -0.3633 0.6101 0.8270 28 1 1.7209 -1.5952 -1.2329 29 1 1.8969 1.8184 3.2823 30 1 1.3584 1.7202 1.5887 31 1 -0.9689 4.1262 3.1237 32 1 2.0384 -0.4316 4.4983 33 1 2.5193 -1.8213 3.4956 34 1 4.5905 -0.6284 2.8357 35 1 4.1096 0.7614 3.8384 36 1 4.2331 0.6059 6.2419 37 1 2.9573 -0.6307 6.1207 38 1 4.3923 -2.2618 7.2779 39 1 4.2319 -0.7916 8.2691 40 1 6.4972 -2.5900 6.0379 41 1 7.7567 -1.3411 6.1919 42 1 6.5316 -1.1879 4.0150 43 1 6.3322 0.2786 5.0044 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345434186.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:35:20 Heat of formation + Delta-G solvation = -128.119310 kcal Electronic energy + Delta-G solvation = -24005.281507 eV Core-core repulsion = 20471.602575 eV Total energy + Delta-G solvation = -3533.678931 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.78052 -39.30342 -36.56561 -35.70751 -34.94402 -32.73266 -31.29141 -30.82052 -29.23063 -27.37927 -26.12260 -24.05236 -23.64518 -23.06863 -21.65022 -20.32582 -18.86047 -17.03975 -16.67919 -16.65647 -16.15986 -16.07669 -15.26001 -15.08847 -14.89823 -14.72392 -14.58103 -14.33906 -13.70442 -13.54609 -13.29766 -12.68777 -12.45814 -12.32812 -12.07804 -11.90681 -11.79071 -11.49937 -11.41670 -11.20783 -11.04674 -11.00259 -10.86905 -10.71246 -10.41229 -10.21691 -10.12177 -9.87170 -9.69717 -8.91067 -8.63946 -8.37362 -7.84384 -6.30726 -4.37994 3.15003 3.19821 3.23712 3.27230 3.52761 3.80317 4.10576 4.23827 4.79588 4.83618 4.97494 5.00017 5.02857 5.10529 5.21544 5.24378 5.44945 5.51805 5.53083 5.58889 5.63771 5.66371 5.74616 5.80999 5.92827 5.93653 6.18827 6.29743 6.40255 6.42370 6.60649 6.92807 6.97023 7.01502 7.07052 7.08781 7.39987 7.63663 7.90387 7.91672 8.21300 8.65480 8.86137 9.29080 10.75516 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.013385 B = 0.005280 C = 0.004046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.411271 B = 5301.718474 C = 6918.080144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.094 3.906 3 H 0.120 0.880 4 O -0.553 6.553 5 C 0.490 3.510 6 O -0.569 6.569 7 N -0.591 5.591 8 C 0.233 3.767 9 C -0.538 4.538 10 H 0.063 0.937 11 C 0.067 3.933 12 N -0.887 5.887 13 Si 0.895 3.105 14 H -0.279 1.279 15 H -0.284 1.284 16 H -0.272 1.272 17 C 0.124 3.876 18 C 0.045 3.955 19 N -0.533 5.533 20 C 0.012 3.988 21 C 0.065 3.935 22 O -0.389 6.389 23 C 0.065 3.935 24 C 0.018 3.982 25 H 0.050 0.950 26 H 0.061 0.939 27 H 0.118 0.882 28 H 0.377 0.623 29 H 0.033 0.967 30 H 0.042 0.958 31 H 0.267 0.733 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.038 0.962 36 H 0.044 0.956 37 H 0.093 0.907 38 H 0.059 0.941 39 H 0.097 0.903 40 H 0.059 0.941 41 H 0.095 0.905 42 H 0.085 0.915 43 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.736 -5.565 3.315 10.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.032 3.968 3 H 0.138 0.862 4 O -0.358 6.358 5 C 0.278 3.722 6 O -0.450 6.450 7 N -0.322 5.322 8 C 0.113 3.887 9 C -0.576 4.576 10 H 0.082 0.918 11 C -0.137 4.137 12 N -0.525 5.525 13 Si 0.723 3.277 14 H -0.205 1.205 15 H -0.210 1.210 16 H -0.196 1.196 17 C 0.000 4.000 18 C -0.084 4.084 19 N -0.259 5.259 20 C -0.116 4.116 21 C -0.012 4.012 22 O -0.308 6.308 23 C -0.012 4.012 24 C -0.110 4.110 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.136 0.864 28 H 0.225 0.775 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.057 0.943 36 H 0.063 0.937 37 H 0.111 0.889 38 H 0.077 0.923 39 H 0.115 0.885 40 H 0.077 0.923 41 H 0.113 0.887 42 H 0.103 0.897 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 8.185 -5.762 3.277 10.533 hybrid contribution -1.314 0.437 0.314 1.420 sum 6.871 -5.325 3.592 9.406 Atomic orbital electron populations 1.22673 0.93423 1.03573 1.05323 1.21810 0.95466 0.96572 0.82949 0.86232 1.86523 1.77934 1.29494 1.41852 1.21459 0.78317 0.86555 0.85914 1.90598 1.48884 1.19094 1.86385 1.48196 1.55069 1.22143 1.06834 1.19550 0.92651 0.77926 0.98540 1.21414 0.96230 0.93389 1.46588 0.91832 1.24948 0.98871 0.94954 0.94913 1.69917 1.36934 0.97932 1.47677 0.86526 0.84013 0.78086 0.79113 1.20456 1.20969 1.19626 1.21168 0.91047 0.98789 0.88964 1.22494 0.96780 0.96704 0.92420 1.62140 1.03509 1.57890 1.02339 1.22883 1.00775 0.97901 0.90046 1.22680 0.80617 1.00075 0.97854 1.87957 1.20224 1.83595 1.38983 1.22640 0.96982 0.97848 0.83705 1.22764 0.88861 0.99585 0.99821 0.93041 0.92003 0.86383 0.77500 0.94853 0.93983 0.92324 0.90313 0.90125 0.90727 0.94322 0.93729 0.88858 0.92264 0.88487 0.92294 0.88685 0.89710 0.94028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.44 9.29 37.16 0.35 -3.10 16 2 C 0.09 1.74 3.16 -27.88 -0.09 1.65 16 3 H 0.12 2.21 6.74 -51.93 -0.35 1.86 16 4 O -0.55 -9.78 13.09 -54.62 -0.71 -10.50 16 5 C 0.49 10.01 6.98 -10.98 -0.08 9.93 16 6 O -0.57 -12.67 15.86 -13.83 -0.22 -12.89 16 7 N -0.59 -11.91 2.46 -175.06 -0.43 -12.34 16 8 C 0.23 5.16 4.68 -5.20 -0.02 5.14 16 9 C -0.54 -12.91 7.11 -34.44 -0.24 -13.16 16 10 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 11 C 0.07 1.66 5.46 -17.82 -0.10 1.56 16 12 N -0.89 -23.08 13.29 55.43 0.74 -22.34 16 13 Si 0.90 19.49 29.54 -169.99 -5.02 14.47 16 14 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 15 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 16 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 17 C 0.12 2.26 5.40 -4.04 -0.02 2.24 16 18 C 0.04 0.73 5.28 -3.83 -0.02 0.71 16 19 N -0.53 -7.63 4.73 -234.31 -1.11 -8.73 16 20 C 0.01 0.16 5.44 -3.71 -0.02 0.14 16 21 C 0.06 0.75 7.01 37.21 0.26 1.01 16 22 O -0.39 -5.01 10.83 -35.23 -0.38 -5.39 16 23 C 0.07 0.72 7.01 37.21 0.26 0.98 16 24 C 0.02 0.22 5.65 -3.71 -0.02 0.20 16 25 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.12 2.43 4.69 -51.93 -0.24 2.18 16 28 H 0.38 5.73 8.68 45.56 0.40 6.13 16 29 H 0.03 0.79 8.12 -51.93 -0.42 0.36 16 30 H 0.04 0.95 5.52 -51.93 -0.29 0.67 16 31 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 32 H 0.08 1.43 6.45 -51.93 -0.33 1.09 16 33 H 0.08 1.55 7.36 -51.93 -0.38 1.17 16 34 H 0.07 1.27 8.04 -51.93 -0.42 0.86 16 35 H 0.04 0.65 8.12 -51.93 -0.42 0.23 16 36 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.09 1.25 6.38 -51.93 -0.33 0.91 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.08 0.97 8.09 -51.93 -0.42 0.55 16 43 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 342.99 15.07 5.17 5.17 Total: -1.00 -28.12 342.99 -7.86 -35.97 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -6.14 Total: 9.27 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: 0.25 Total: 7.31 kcal Atomic # 7 Polarization: -42.61 SS G_CDS: -0.80 Total: -43.41 kcal Atomic # 8 Polarization: -27.47 SS G_CDS: -1.32 Total: -28.78 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.02 Total: 14.47 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -28.12 -7.86 -35.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345434186.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.147 kcal (2) G-P(sol) polarization free energy of solvation -28.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds