Wall clock time and date at job start Tue Mar 31 2020 02:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34231 * 117.00469 * 2 1 4 4 O 1.20826 * 119.99627 * 0.02562 * 3 2 1 5 5 C 1.50693 * 120.00098 * 179.97438 * 3 2 1 6 6 N 1.46496 * 109.47090 * 180.02562 * 5 3 2 7 7 C 1.36943 * 119.99782 * 82.95053 * 6 5 3 8 8 H 1.08006 * 119.99746 * 166.26304 * 7 6 5 9 9 C 1.38802 * 120.00064 * 346.25544 * 7 6 5 10 10 N 1.31618 * 120.00015 * 8.56861 * 9 7 6 11 11 Si 1.86803 * 120.00254 * 188.56137 * 9 7 6 12 12 H 1.48506 * 109.46946 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.46836 * 120.00288 * 11 9 7 14 14 H 1.48497 * 109.47294 * 240.00757 * 11 9 7 15 15 C 1.46499 * 120.00260 * 262.94861 * 6 5 3 16 16 C 1.53005 * 109.47201 * 90.00060 * 15 6 5 17 17 H 1.09004 * 109.47172 * 59.99573 * 16 15 6 18 18 O 1.42903 * 109.46661 * 300.00302 * 16 15 6 19 19 C 1.52997 * 109.47387 * 180.02562 * 16 15 6 20 20 N 1.46897 * 109.47165 * 183.13481 * 19 16 15 21 21 C 1.46900 * 110.99919 * 198.71964 * 20 19 16 22 22 C 1.46898 * 111.00115 * 74.76595 * 20 19 16 23 23 C 1.53007 * 117.49936 * 248.62063 * 22 20 19 24 24 C 1.52999 * 60.00091 * 252.51037 * 23 22 20 25 25 H 1.09006 * 109.46806 * 59.99301 * 1 2 3 26 26 H 1.08998 * 109.47578 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.46941 * 300.00256 * 1 2 3 28 28 H 1.08999 * 109.47030 * 59.99958 * 5 3 2 29 29 H 1.09000 * 109.47326 * 300.00404 * 5 3 2 30 30 H 0.97007 * 120.00152 * 179.97438 * 10 9 7 31 31 H 1.08995 * 109.47627 * 210.00093 * 15 6 5 32 32 H 1.08996 * 109.47176 * 330.00353 * 15 6 5 33 33 H 0.96699 * 114.00214 * 299.99750 * 18 16 15 34 34 H 1.09001 * 109.47116 * 303.13730 * 19 16 15 35 35 H 1.08998 * 109.47045 * 63.13499 * 19 16 15 36 36 H 1.09005 * 109.47170 * 63.12018 * 21 20 19 37 37 H 1.08997 * 109.47155 * 183.11594 * 21 20 19 38 38 H 1.09002 * 109.47259 * 303.11716 * 21 20 19 39 39 H 1.09000 * 115.54819 * 34.32659 * 22 20 19 40 40 H 1.09001 * 117.49453 * 0.02562 * 23 22 20 41 41 H 1.08999 * 117.49691 * 145.01415 * 23 22 20 42 42 H 1.08995 * 117.49717 * 252.51247 * 24 23 22 43 43 H 1.09003 * 117.51761 * 107.47847 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4035 2.2093 0.0005 5 6 3.5664 1.2747 0.0006 6 7 3.9818 2.6795 0.0011 7 6 4.0360 3.3771 1.1783 8 1 4.5455 4.3285 1.2192 9 6 3.4359 2.8615 2.3188 10 7 2.9633 1.6331 2.3157 11 14 3.2992 3.9109 3.8581 12 1 3.9023 5.2439 3.6036 13 1 1.8683 4.0761 4.2191 14 1 4.0181 3.2471 4.9752 15 6 4.3394 3.3382 -1.2577 16 6 3.0911 3.9735 -1.8735 17 1 2.6794 4.7092 -1.1825 18 8 2.1161 2.9598 -2.1263 19 6 3.4644 4.6608 -3.1884 20 7 2.2820 5.3344 -3.7417 21 6 2.4590 5.6182 -5.1721 22 6 1.9781 6.5624 -2.9950 23 6 0.7029 6.5779 -2.1496 24 6 0.7696 7.3841 -3.4482 25 1 -0.3633 0.5140 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 3.9564 0.7804 -0.8891 29 1 3.9558 0.7807 0.8908 30 1 2.5443 1.2725 3.1129 31 1 5.0831 4.1113 -1.0649 32 1 4.7510 2.6024 -1.9486 33 1 2.4147 2.2698 -2.7345 34 1 4.2483 5.3955 -3.0046 35 1 3.8237 3.9160 -3.8985 36 1 2.5579 4.6806 -5.7191 37 1 1.5930 6.1659 -5.5437 38 1 3.3574 6.2188 -5.3149 39 1 2.8421 7.1064 -2.6133 40 1 0.0897 5.6767 -2.1472 41 1 0.7279 7.1320 -1.2113 42 1 0.8384 8.4686 -3.3643 43 1 0.2003 7.0136 -4.3008 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351513935.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:46 Heat of formation + Delta-G solvation = -59.158988 kcal Electronic energy + Delta-G solvation = -24886.162597 eV Core-core repulsion = 21355.474010 eV Total energy + Delta-G solvation = -3530.688587 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -38.78698 -38.42224 -36.75723 -35.13032 -34.06172 -33.65034 -31.35254 -29.48182 -27.82913 -26.21901 -25.78316 -24.24239 -22.18567 -22.03154 -20.70378 -20.02336 -19.45104 -16.97295 -16.36517 -15.91515 -15.61873 -15.23272 -14.97922 -14.84400 -14.59124 -14.40927 -14.16722 -13.62797 -13.30032 -12.89613 -12.78989 -12.40470 -12.03683 -11.94764 -11.74032 -11.51754 -11.20281 -11.10375 -10.99372 -10.79226 -10.67507 -10.30863 -10.17098 -10.10111 -10.03762 -10.00666 -9.98200 -9.44545 -9.13057 -8.70638 -8.35166 -8.03935 -6.95209 -5.77363 -3.20672 3.38495 3.45649 3.48013 3.92316 3.97275 4.26418 4.34053 4.58519 5.05096 5.10756 5.14977 5.20522 5.34537 5.41470 5.47579 5.55661 5.64087 5.71837 5.79362 5.88808 5.92405 5.95050 6.00104 6.04904 6.09402 6.19677 6.22773 6.29641 6.47736 6.50715 6.55515 6.92919 7.01816 7.23595 7.30897 7.48933 7.67451 8.12501 8.31743 8.62905 9.12528 9.71811 9.89786 10.17939 11.23944 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.014946 B = 0.006256 C = 0.005417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.982712 B = 4474.545650 C = 5167.639678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 O -0.388 6.388 3 C 0.463 3.537 4 O -0.487 6.487 5 C 0.194 3.806 6 N -0.567 5.567 7 C -0.235 4.235 8 H 0.078 0.922 9 C 0.003 3.997 10 N -0.915 5.915 11 Si 0.914 3.086 12 H -0.280 1.280 13 H -0.290 1.290 14 H -0.291 1.291 15 C 0.117 3.883 16 C 0.098 3.902 17 H 0.096 0.904 18 O -0.515 6.515 19 C 0.025 3.975 20 N -0.502 5.502 21 C 0.027 3.973 22 C 0.008 3.992 23 C -0.152 4.152 24 C -0.182 4.182 25 H 0.044 0.956 26 H 0.073 0.927 27 H 0.045 0.955 28 H 0.033 0.967 29 H 0.131 0.869 30 H 0.255 0.745 31 H 0.055 0.945 32 H 0.042 0.958 33 H 0.340 0.660 34 H 0.037 0.963 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.019 0.981 39 H 0.085 0.915 40 H 0.105 0.895 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.109 3.633 -11.833 12.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 O -0.307 6.307 3 C 0.303 3.697 4 O -0.370 6.370 5 C 0.066 3.934 6 N -0.286 5.286 7 C -0.363 4.363 8 H 0.096 0.904 9 C -0.192 4.192 10 N -0.563 5.563 11 Si 0.745 3.255 12 H -0.206 1.206 13 H -0.217 1.217 14 H -0.219 1.219 15 C -0.011 4.011 16 C 0.036 3.964 17 H 0.114 0.886 18 O -0.315 6.315 19 C -0.104 4.104 20 N -0.226 5.226 21 C -0.121 4.121 22 C -0.100 4.100 23 C -0.190 4.190 24 C -0.220 4.220 25 H 0.063 0.937 26 H 0.092 0.908 27 H 0.064 0.936 28 H 0.051 0.949 29 H 0.149 0.851 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.183 0.817 34 H 0.055 0.945 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.038 0.962 39 H 0.102 0.898 40 H 0.123 0.877 41 H 0.109 0.891 42 H 0.108 0.892 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.908 3.965 -11.210 11.925 hybrid contribution 0.417 0.986 0.424 1.151 sum -0.491 4.950 -10.786 11.878 Atomic orbital electron populations 1.22726 0.80672 1.00577 1.00871 1.86533 1.20217 1.37519 1.86402 1.25101 0.93197 0.80111 0.71325 1.90495 1.66147 1.35947 1.44452 1.20565 0.86009 0.85665 1.01207 1.43848 1.75193 1.07806 1.01776 1.19342 1.28027 1.02774 0.86159 0.90440 1.24803 0.98843 0.96763 0.98831 1.69737 1.44401 1.13743 1.28445 0.86032 0.77477 0.79542 0.82499 1.20562 1.21694 1.21854 1.21627 0.94921 0.96048 0.88496 1.22616 0.91523 0.90184 0.92121 0.88647 1.86964 1.40460 1.36842 1.67282 1.23044 0.90384 0.97912 0.99019 1.61745 1.37868 1.21450 1.01521 1.22361 0.99876 1.00625 0.89215 1.22407 0.92249 0.92791 1.02589 1.23034 1.00172 1.02040 0.93779 1.23047 1.01708 0.97443 0.99800 0.93724 0.90795 0.93615 0.94878 0.85147 0.93365 0.92711 0.93989 0.81672 0.94513 0.91328 0.91696 0.91690 0.96233 0.89763 0.87701 0.89063 0.89225 0.88753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.91 10.56 101.05 1.07 1.98 16 2 O -0.39 -8.96 10.57 -39.26 -0.41 -9.37 16 3 C 0.46 11.58 4.82 36.00 0.17 11.76 16 4 O -0.49 -13.54 13.00 -26.54 -0.34 -13.88 16 5 C 0.19 4.60 5.44 -5.20 -0.03 4.57 16 6 N -0.57 -13.53 2.04 -174.62 -0.36 -13.89 16 7 C -0.23 -6.23 9.57 -15.06 -0.14 -6.37 16 8 H 0.08 2.00 7.82 -52.48 -0.41 1.59 16 9 C 0.00 0.08 5.18 -17.43 -0.09 -0.01 16 10 N -0.91 -25.77 8.02 55.49 0.45 -25.33 16 11 Si 0.91 22.32 29.56 -169.99 -5.03 17.29 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 14 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 15 C 0.12 2.25 5.40 -4.04 -0.02 2.22 16 16 C 0.10 1.84 3.20 -26.73 -0.09 1.75 16 17 H 0.10 2.16 7.56 -51.93 -0.39 1.76 16 18 O -0.52 -10.52 9.07 -58.76 -0.53 -11.05 16 19 C 0.03 0.37 4.64 -3.83 -0.02 0.36 16 20 N -0.50 -7.38 4.77 -234.88 -1.12 -8.50 16 21 C 0.03 0.32 9.40 60.06 0.56 0.89 16 22 C 0.01 0.12 4.59 -67.71 -0.31 -0.19 16 23 C -0.15 -2.32 10.40 -26.73 -0.28 -2.60 16 24 C -0.18 -2.26 9.69 -26.73 -0.26 -2.52 16 25 H 0.04 0.85 8.13 -51.93 -0.42 0.42 16 26 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.05 0.95 8.13 -51.93 -0.42 0.53 16 28 H 0.03 0.68 7.82 -51.93 -0.41 0.28 16 29 H 0.13 3.41 6.06 -51.93 -0.31 3.09 16 30 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 31 H 0.05 1.01 8.02 -51.93 -0.42 0.59 16 32 H 0.04 0.71 7.85 -51.93 -0.41 0.30 16 33 H 0.34 5.92 9.04 45.56 0.41 6.33 16 34 H 0.04 0.52 7.85 -51.93 -0.41 0.11 16 35 H 0.07 0.91 7.94 -51.93 -0.41 0.49 16 36 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 37 H 0.06 0.71 6.66 -51.93 -0.35 0.37 16 38 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 39 H 0.08 1.20 7.90 -51.93 -0.41 0.79 16 40 H 0.10 1.85 8.14 -51.93 -0.42 1.43 16 41 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 42 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.09 1.13 7.25 -51.93 -0.38 0.76 16 LS Contribution 346.43 15.07 5.22 5.22 Total: -1.00 -31.66 346.43 -7.96 -39.62 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -6.40 Total: 8.06 kcal Atomic # 6 Polarization: 11.26 SS G_CDS: 0.57 Total: 11.83 kcal Atomic # 7 Polarization: -46.69 SS G_CDS: -1.03 Total: -47.72 kcal Atomic # 8 Polarization: -33.01 SS G_CDS: -1.29 Total: -34.31 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.03 Total: 17.29 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.66 -7.96 -39.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351513935.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.540 kcal (2) G-P(sol) polarization free energy of solvation -31.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds