Wall clock time and date at job start Tue Mar 31 2020 02:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42895 * 109.47036 * 2 1 4 4 C 1.42901 * 113.99948 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.52417 * 329.87354 * 4 3 2 6 6 C 1.53086 * 109.52263 * 90.00095 * 4 3 2 7 7 O 1.42899 * 109.41411 * 62.30150 * 6 4 3 8 8 C 1.42901 * 114.10287 * 61.15702 * 7 6 4 9 9 C 1.53092 * 109.41048 * 298.84393 * 8 7 6 10 10 C 1.53172 * 109.16502 * 57.60742 * 9 8 7 11 11 H 1.08998 * 109.54694 * 62.88919 * 10 9 8 12 12 N 1.46503 * 109.54352 * 183.15056 * 10 9 8 13 13 C 1.34780 * 119.99815 * 274.55348 * 12 10 9 14 14 O 1.21583 * 120.00458 * 0.02562 * 13 12 10 15 15 N 1.34780 * 119.99781 * 179.97438 * 13 12 10 16 16 C 1.46494 * 119.99949 * 179.97438 * 15 13 12 17 17 C 1.53000 * 109.47345 * 180.02562 * 16 15 13 18 18 C 1.50697 * 109.47337 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00070 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99979 * 180.02562 * 18 17 16 21 21 N 1.31520 * 119.99830 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99959 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47250 * 59.99834 * 22 20 18 24 24 H 1.48496 * 109.46831 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.46668 * 299.99668 * 22 20 18 26 26 H 1.09001 * 109.47002 * 299.99477 * 1 2 3 27 27 H 1.08993 * 109.46955 * 59.99914 * 1 2 3 28 28 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46801 * 120.00369 * 2 1 3 30 30 H 1.09001 * 109.46998 * 239.99965 * 2 1 3 31 31 H 1.08998 * 109.48120 * 182.27683 * 6 4 3 32 32 H 1.09001 * 109.48160 * 302.30545 * 6 4 3 33 33 H 1.08999 * 109.48235 * 58.82441 * 8 7 6 34 34 H 1.09004 * 109.48405 * 178.86473 * 8 7 6 35 35 H 1.09005 * 109.51758 * 177.51227 * 9 8 7 36 36 H 1.09002 * 109.52610 * 297.69802 * 9 8 7 37 37 H 0.96998 * 119.99909 * 94.55587 * 12 10 9 38 38 H 0.97004 * 120.00058 * 0.02562 * 15 13 12 39 39 H 1.08997 * 109.47656 * 300.00811 * 16 15 13 40 40 H 1.09005 * 109.46666 * 60.00846 * 16 15 13 41 41 H 1.08997 * 109.47245 * 300.00865 * 17 16 15 42 42 H 1.09005 * 109.46992 * 60.00205 * 17 16 15 43 43 H 0.97000 * 119.99669 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8644 0.6030 0.5147 6 6 3.9403 1.5007 -1.4436 7 8 3.4154 2.6563 -2.1003 8 6 3.8063 3.8945 -1.5036 9 6 3.2915 3.9500 -0.0629 10 6 3.8425 2.7507 0.7145 11 1 4.9298 2.8126 0.7580 12 7 3.2950 2.7540 2.0734 13 6 3.8937 3.4787 3.0393 14 8 4.8878 4.1300 2.7828 15 7 3.3897 3.4822 4.2893 16 6 4.0407 4.2695 5.3393 17 6 3.2748 4.0998 6.6529 18 6 3.9442 4.9102 7.7329 19 1 4.8272 5.4887 7.5051 20 6 3.4291 4.9130 9.0119 21 7 2.3535 4.2089 9.2892 22 14 4.2584 5.9180 10.3505 23 1 4.2629 7.3514 9.9623 24 1 3.5151 5.7532 11.6254 25 1 5.6561 5.4487 10.5276 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 5.0293 1.5460 -1.4436 32 1 3.6137 0.6037 -1.9698 33 1 4.8936 3.9711 -1.5043 34 1 3.3831 4.7221 -2.0729 35 1 3.6263 4.8743 0.4081 36 1 2.2021 3.9143 -0.0636 37 1 2.5017 2.2347 2.2779 38 1 2.5963 2.9629 4.4938 39 1 5.0661 3.9238 5.4697 40 1 4.0454 5.3216 5.0544 41 1 2.2493 4.4453 6.5228 42 1 3.2704 3.0476 6.9376 43 1 1.9914 4.2106 10.1891 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352552248.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:52 Heat of formation + Delta-G solvation = -136.859338 kcal Electronic energy + Delta-G solvation = -23163.883071 eV Core-core repulsion = 19629.825144 eV Total energy + Delta-G solvation = -3534.057927 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.47211 -39.11152 -37.45044 -35.34384 -34.47385 -32.86942 -31.88051 -31.36878 -30.00411 -29.17706 -25.31533 -24.14634 -23.70290 -23.02979 -21.08184 -20.51215 -20.44842 -18.10954 -17.07609 -16.95085 -16.40831 -16.30644 -15.84977 -15.28236 -15.10851 -14.83884 -14.55247 -14.41622 -13.91788 -13.65173 -13.50097 -13.15726 -12.98823 -12.66948 -12.39211 -12.25884 -12.02853 -11.56736 -11.52522 -11.18412 -11.03784 -10.97422 -10.88757 -10.64161 -10.29579 -10.28038 -9.94461 -9.58588 -9.41360 -9.24996 -8.99339 -8.47161 -8.23566 -6.08137 -4.10841 2.99230 3.23505 3.32126 3.35796 3.39514 3.58747 3.73066 4.33034 4.39678 4.51958 4.57432 4.69832 4.78334 4.86906 5.00391 5.05011 5.06816 5.10012 5.23855 5.28847 5.33765 5.37029 5.52053 5.64029 5.69330 5.82572 5.87684 6.16288 6.31690 6.41067 6.62003 6.78554 6.80106 7.01882 7.04028 7.28117 7.58306 7.64680 7.91013 8.27255 8.45866 8.93781 9.01299 9.53771 11.03515 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.025678 B = 0.002982 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.172326 B = 9387.269491 C =10196.087199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.366 6.366 4 C 0.048 3.952 5 H 0.076 0.924 6 C 0.045 3.955 7 O -0.372 6.372 8 C 0.063 3.937 9 C -0.164 4.164 10 C 0.172 3.828 11 H 0.098 0.902 12 N -0.744 5.744 13 C 0.699 3.301 14 O -0.600 6.600 15 N -0.738 5.738 16 C 0.140 3.860 17 C 0.013 3.987 18 C -0.521 4.521 19 H 0.059 0.941 20 C 0.059 3.941 21 N -0.895 5.895 22 Si 0.897 3.103 23 H -0.275 1.275 24 H -0.287 1.287 25 H -0.276 1.276 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.049 0.951 30 H 0.047 0.953 31 H 0.062 0.938 32 H 0.097 0.903 33 H 0.052 0.948 34 H 0.097 0.903 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.398 0.602 38 H 0.393 0.607 39 H 0.053 0.947 40 H 0.054 0.946 41 H 0.022 0.978 42 H 0.022 0.978 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.503 -9.495 -22.204 24.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.285 6.285 4 C -0.011 4.011 5 H 0.094 0.906 6 C -0.033 4.033 7 O -0.290 6.290 8 C -0.014 4.014 9 C -0.203 4.203 10 C 0.066 3.934 11 H 0.116 0.884 12 N -0.400 5.400 13 C 0.399 3.601 14 O -0.479 6.479 15 N -0.391 5.391 16 C 0.018 3.982 17 C -0.024 4.024 18 C -0.560 4.560 19 H 0.077 0.923 20 C -0.143 4.143 21 N -0.534 5.534 22 Si 0.725 3.275 23 H -0.201 1.201 24 H -0.213 1.213 25 H -0.201 1.201 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.115 0.885 33 H 0.070 0.930 34 H 0.115 0.885 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.232 0.768 38 H 0.226 0.774 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.040 0.960 42 H 0.040 0.960 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.934 -8.767 -22.402 24.074 hybrid contribution -0.085 -0.245 1.316 1.341 sum -1.019 -9.012 -21.086 22.954 Atomic orbital electron populations 1.21728 0.93529 1.02206 1.03344 1.22555 0.95867 0.83884 0.99919 1.88003 1.19423 1.26157 1.94891 1.23101 0.83022 0.98505 0.96503 0.90632 1.23022 0.97992 0.89952 0.92331 1.87951 1.74010 1.13549 1.53533 1.22606 0.98922 0.86550 0.93308 1.22572 1.02798 0.99447 0.95498 1.20784 0.98918 0.92979 0.80702 0.88405 1.45062 1.33159 1.53224 1.08531 1.16081 0.83008 0.80216 0.80817 1.90874 1.27430 1.47629 1.81973 1.45536 1.32588 1.52658 1.08356 1.21584 0.96490 0.93650 0.86507 1.19318 0.95787 0.97848 0.89478 1.21020 1.12392 1.28710 0.93892 0.92272 1.24997 0.94974 0.95599 0.98716 1.69951 1.21784 1.40817 1.20823 0.86565 0.79517 0.80675 0.80739 1.20097 1.21262 1.20111 0.91664 0.91792 0.91198 0.93311 0.93515 0.91951 0.88523 0.92976 0.88525 0.90054 0.90068 0.76790 0.77394 0.92831 0.92797 0.95972 0.96011 0.92813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 10.28 37.16 0.38 -0.68 16 2 C 0.05 0.41 6.47 37.16 0.24 0.66 16 3 O -0.37 -3.67 8.78 -42.73 -0.38 -4.04 16 4 C 0.05 0.45 2.59 -26.60 -0.07 0.38 16 5 H 0.08 0.61 7.79 -51.93 -0.40 0.21 16 6 C 0.04 0.38 6.48 37.20 0.24 0.62 16 7 O -0.37 -4.01 10.69 -42.73 -0.46 -4.47 16 8 C 0.06 0.63 6.84 37.21 0.25 0.88 16 9 C -0.16 -1.92 5.56 -26.59 -0.15 -2.07 16 10 C 0.17 2.04 2.33 -67.75 -0.16 1.88 16 11 H 0.10 1.26 7.58 -51.93 -0.39 0.86 16 12 N -0.74 -9.94 5.05 -58.50 -0.30 -10.23 16 13 C 0.70 12.37 8.54 -86.91 -0.74 11.63 16 14 O -0.60 -12.78 16.01 5.29 0.08 -12.69 16 15 N -0.74 -13.32 5.56 -65.23 -0.36 -13.68 16 16 C 0.14 3.06 5.61 -4.04 -0.02 3.04 16 17 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 18 C -0.52 -14.58 9.11 -34.44 -0.31 -14.90 16 19 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 20 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 21 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 22 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.34 8.09 -51.93 -0.42 -0.08 16 30 H 0.05 0.31 7.83 -51.93 -0.41 -0.10 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.10 0.68 7.83 -51.93 -0.41 0.27 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.08 1.02 7.83 -51.93 -0.41 0.61 16 37 H 0.40 4.63 8.11 -40.82 -0.33 4.30 16 38 H 0.39 6.18 8.49 -40.82 -0.35 5.83 16 39 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 353.77 15.07 5.33 5.33 Total: -1.00 -32.82 353.77 -8.24 -41.06 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -7.31 Total: 4.61 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: -0.57 Total: 3.19 kcal Atomic # 7 Polarization: -49.52 SS G_CDS: 0.08 Total: -49.44 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: -0.75 Total: -21.21 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.82 -8.24 -41.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352552248.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.798 kcal (2) G-P(sol) polarization free energy of solvation -32.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds