Wall clock time and date at job start Tue Mar 31 2020 02:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42895 * 109.47036 * 2 1 4 4 C 1.42901 * 113.99948 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.52417 * 329.87354 * 4 3 2 6 6 C 1.53086 * 109.52263 * 90.00095 * 4 3 2 7 7 O 1.42899 * 109.41411 * 62.30150 * 6 4 3 8 8 C 1.42901 * 114.10287 * 61.15702 * 7 6 4 9 9 C 1.53092 * 109.41048 * 298.84393 * 8 7 6 10 10 C 1.53172 * 109.16502 * 57.60742 * 9 8 7 11 11 H 1.08998 * 109.54694 * 62.88919 * 10 9 8 12 12 N 1.46503 * 109.54352 * 183.15056 * 10 9 8 13 13 C 1.34780 * 119.99815 * 274.55348 * 12 10 9 14 14 O 1.21583 * 120.00458 * 0.02562 * 13 12 10 15 15 N 1.34780 * 119.99781 * 179.97438 * 13 12 10 16 16 C 1.46494 * 119.99949 * 179.97438 * 15 13 12 17 17 C 1.53000 * 109.47345 * 180.02562 * 16 15 13 18 18 C 1.50697 * 109.47337 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00070 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99979 * 180.02562 * 18 17 16 21 21 N 1.31520 * 119.99830 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99959 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47250 * 59.99834 * 22 20 18 24 24 H 1.48496 * 109.46831 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.46668 * 299.99668 * 22 20 18 26 26 H 1.09001 * 109.47002 * 299.99477 * 1 2 3 27 27 H 1.08993 * 109.46955 * 59.99914 * 1 2 3 28 28 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46801 * 120.00369 * 2 1 3 30 30 H 1.09001 * 109.46998 * 239.99965 * 2 1 3 31 31 H 1.08998 * 109.48120 * 182.27683 * 6 4 3 32 32 H 1.09001 * 109.48160 * 302.30545 * 6 4 3 33 33 H 1.08999 * 109.48235 * 58.82441 * 8 7 6 34 34 H 1.09004 * 109.48405 * 178.86473 * 8 7 6 35 35 H 1.09005 * 109.51758 * 177.51227 * 9 8 7 36 36 H 1.09002 * 109.52610 * 297.69802 * 9 8 7 37 37 H 0.96998 * 119.99909 * 94.55587 * 12 10 9 38 38 H 0.97004 * 120.00058 * 0.02562 * 15 13 12 39 39 H 1.08997 * 109.47656 * 300.00811 * 16 15 13 40 40 H 1.09005 * 109.46666 * 60.00846 * 16 15 13 41 41 H 1.08997 * 109.47245 * 300.00865 * 17 16 15 42 42 H 1.09005 * 109.46992 * 60.00205 * 17 16 15 43 43 H 0.97000 * 119.99669 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8644 0.6030 0.5147 6 6 3.9403 1.5007 -1.4436 7 8 3.4154 2.6563 -2.1003 8 6 3.8063 3.8945 -1.5036 9 6 3.2915 3.9500 -0.0629 10 6 3.8425 2.7507 0.7145 11 1 4.9298 2.8126 0.7580 12 7 3.2950 2.7540 2.0734 13 6 3.8937 3.4787 3.0393 14 8 4.8878 4.1300 2.7828 15 7 3.3897 3.4822 4.2893 16 6 4.0407 4.2695 5.3393 17 6 3.2748 4.0998 6.6529 18 6 3.9442 4.9102 7.7329 19 1 4.8272 5.4887 7.5051 20 6 3.4291 4.9130 9.0119 21 7 2.3535 4.2089 9.2892 22 14 4.2584 5.9180 10.3505 23 1 4.2629 7.3514 9.9623 24 1 3.5151 5.7532 11.6254 25 1 5.6561 5.4487 10.5276 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 5.0293 1.5460 -1.4436 32 1 3.6137 0.6037 -1.9698 33 1 4.8936 3.9711 -1.5043 34 1 3.3831 4.7221 -2.0729 35 1 3.6263 4.8743 0.4081 36 1 2.2021 3.9143 -0.0636 37 1 2.5017 2.2347 2.2779 38 1 2.5963 2.9629 4.4938 39 1 5.0661 3.9238 5.4697 40 1 4.0454 5.3216 5.0544 41 1 2.2493 4.4453 6.5228 42 1 3.2704 3.0476 6.9376 43 1 1.9914 4.2106 10.1891 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352552248.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:51 Heat of formation + Delta-G solvation = -160.915700 kcal Electronic energy + Delta-G solvation = -23164.926234 eV Core-core repulsion = 19629.825144 eV Total energy + Delta-G solvation = -3535.101090 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.50361 -40.31359 -38.16953 -36.80837 -35.89495 -34.82643 -32.83338 -32.30266 -31.18054 -30.48494 -26.92325 -25.43818 -24.51213 -23.66367 -22.91366 -21.91981 -21.36345 -19.48323 -18.43174 -17.98789 -17.71280 -17.21124 -16.73769 -16.55246 -16.48403 -16.26671 -15.79548 -15.31216 -15.22066 -15.02738 -14.82418 -14.29601 -14.07407 -14.03432 -13.35884 -13.21781 -13.07118 -12.92997 -12.72697 -12.53220 -12.38236 -12.22938 -12.16826 -11.82763 -11.71285 -11.65715 -11.50176 -11.22278 -10.98781 -10.59908 -10.32274 -10.16625 -9.74106 -8.23720 -6.34229 1.42098 1.44759 1.52436 1.70903 2.13987 2.41539 2.56330 2.99183 3.11044 3.34337 3.54399 3.75791 3.82386 4.10059 4.21523 4.23269 4.32750 4.39946 4.45716 4.50845 4.52061 4.54017 4.55754 4.71653 4.83599 4.86417 4.89742 4.96937 5.08315 5.18750 5.31369 5.31859 5.49107 5.52023 5.59257 5.78724 6.01503 6.10565 6.17251 6.34977 6.78839 7.10251 7.35090 7.58013 8.88064 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.025678 B = 0.002982 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.172326 B = 9387.269491 C =10196.087199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.049 3.951 3 O -0.385 6.385 4 C 0.055 3.945 5 H 0.092 0.908 6 C 0.042 3.958 7 O -0.387 6.387 8 C 0.067 3.933 9 C -0.158 4.158 10 C 0.166 3.834 11 H 0.089 0.911 12 N -0.725 5.725 13 C 0.699 3.301 14 O -0.636 6.636 15 N -0.734 5.734 16 C 0.161 3.839 17 C 0.024 3.976 18 C -0.548 4.548 19 H 0.059 0.941 20 C 0.007 3.993 21 N -0.927 5.927 22 Si 0.965 3.035 23 H -0.269 1.269 24 H -0.281 1.281 25 H -0.268 1.268 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.087 0.913 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.116 0.884 33 H 0.062 0.938 34 H 0.107 0.893 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.409 0.591 38 H 0.405 0.595 39 H 0.045 0.955 40 H 0.042 0.958 41 H 0.007 0.993 42 H 0.009 0.991 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.179 -10.295 -22.927 25.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.027 4.027 3 O -0.304 6.304 4 C -0.004 4.004 5 H 0.110 0.890 6 C -0.036 4.036 7 O -0.305 6.305 8 C -0.010 4.010 9 C -0.197 4.197 10 C 0.060 3.940 11 H 0.107 0.893 12 N -0.381 5.381 13 C 0.399 3.601 14 O -0.518 6.518 15 N -0.388 5.388 16 C 0.037 3.963 17 C -0.013 4.013 18 C -0.586 4.586 19 H 0.078 0.922 20 C -0.192 4.192 21 N -0.566 5.566 22 Si 0.790 3.210 23 H -0.194 1.194 24 H -0.206 1.206 25 H -0.193 1.193 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.106 0.894 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.134 0.866 33 H 0.080 0.920 34 H 0.125 0.875 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.245 0.755 38 H 0.240 0.760 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.025 0.975 42 H 0.027 0.973 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.645 -9.607 -23.164 25.086 hybrid contribution -0.234 -0.049 1.485 1.504 sum -0.879 -9.657 -21.679 23.749 Atomic orbital electron populations 1.21742 0.93373 1.03120 1.02475 1.22725 0.96029 0.82936 1.01004 1.87983 1.19633 1.27786 1.95044 1.23045 0.83096 0.97327 0.96967 0.89007 1.23220 0.98933 0.89864 0.91567 1.87933 1.74495 1.14170 1.53943 1.22611 0.99494 0.86951 0.91952 1.22476 1.02052 0.98373 0.96802 1.20980 0.98449 0.94790 0.79746 0.89290 1.44935 1.32898 1.51834 1.08392 1.16151 0.82674 0.80243 0.81006 1.90849 1.29149 1.49262 1.82536 1.45242 1.32950 1.52594 1.08065 1.21069 0.95682 0.93486 0.86055 1.19120 0.95107 0.96470 0.90626 1.21446 1.12784 1.29287 0.95114 0.92227 1.25878 0.95536 0.96624 1.01116 1.70057 1.23016 1.42000 1.21569 0.85493 0.78677 0.79166 0.77686 1.19362 1.20582 1.19258 0.92644 0.92519 0.89423 0.92500 0.92079 0.90430 0.86648 0.92000 0.87477 0.92199 0.91057 0.75516 0.75952 0.93691 0.93908 0.97464 0.97302 0.92535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 10.28 71.98 0.74 -1.15 16 2 C 0.05 0.64 6.47 71.98 0.47 1.11 16 3 O -0.38 -7.05 8.78 -141.81 -1.25 -8.29 16 4 C 0.05 0.91 2.59 30.68 0.08 0.99 16 5 H 0.09 1.24 7.79 -2.39 -0.02 1.22 16 6 C 0.04 0.60 6.48 72.01 0.47 1.07 16 7 O -0.39 -7.63 10.69 -141.81 -1.52 -9.15 16 8 C 0.07 1.25 6.84 72.01 0.49 1.74 16 9 C -0.16 -3.65 5.56 30.68 0.17 -3.48 16 10 C 0.17 3.77 2.33 45.11 0.10 3.88 16 11 H 0.09 2.23 7.58 -2.39 -0.02 2.21 16 12 N -0.73 -18.87 5.05 -457.25 -2.31 -21.18 16 13 C 0.70 24.67 8.54 179.05 1.53 26.20 16 14 O -0.64 -27.30 16.01 -3.98 -0.06 -27.37 16 15 N -0.73 -26.50 5.56 -478.54 -2.66 -29.16 16 16 C 0.16 7.12 5.61 86.38 0.48 7.61 16 17 C 0.02 1.24 5.09 29.85 0.15 1.39 16 18 C -0.55 -30.87 9.11 25.60 0.23 -30.64 16 19 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 20 C 0.01 0.41 5.46 84.65 0.46 0.87 16 21 N -0.93 -54.60 13.29 21.45 0.28 -54.32 16 22 Si 0.97 43.76 29.54 68.60 2.03 45.78 16 23 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 24 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 25 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 26 H 0.05 0.79 8.14 -2.39 -0.02 0.78 16 27 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.06 0.65 8.09 -2.39 -0.02 0.63 16 30 H 0.06 0.63 7.83 -2.39 -0.02 0.61 16 31 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.12 1.25 7.83 -2.39 -0.02 1.23 16 33 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.11 1.73 8.14 -2.38 -0.02 1.71 16 35 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 36 H 0.07 1.77 7.83 -2.39 -0.02 1.76 16 37 H 0.41 9.03 8.11 -92.71 -0.75 8.28 16 38 H 0.41 12.62 8.49 -92.71 -0.79 11.83 16 39 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.04 1.98 8.14 -2.38 -0.02 1.96 16 41 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 42 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 43 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 Total: -1.00 -69.90 353.77 -0.64 -70.54 By element: Atomic # 1 Polarization: 24.08 SS G_CDS: -0.54 Total: 23.54 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: 5.38 Total: 9.59 kcal Atomic # 7 Polarization: -99.97 SS G_CDS: -4.69 Total: -104.65 kcal Atomic # 8 Polarization: -41.98 SS G_CDS: -2.83 Total: -44.81 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.78 kcal Total: -69.90 -0.64 -70.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352552248.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.373 kcal (2) G-P(sol) polarization free energy of solvation -69.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds