Wall clock time and date at job start Tue Mar 31 2020 02:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 113.99741 * 2 1 4 4 C 1.52997 * 109.46954 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.47356 * 179.97438 * 4 3 2 6 6 H 1.09004 * 109.46559 * 55.00092 * 5 4 3 7 7 C 1.52993 * 109.47139 * 175.00020 * 5 4 3 8 8 O 1.42902 * 109.47403 * 55.00341 * 7 5 4 9 9 N 1.46497 * 109.47192 * 295.00401 * 5 4 3 10 10 C 1.34780 * 119.99719 * 154.99545 * 9 5 4 11 11 O 1.21578 * 120.00108 * 359.97438 * 10 9 5 12 12 N 1.34782 * 119.99559 * 180.02562 * 10 9 5 13 13 C 1.46499 * 119.99602 * 180.02562 * 12 10 9 14 14 C 1.53006 * 109.46602 * 184.79227 * 13 12 10 15 15 C 1.50694 * 115.55031 * 294.81113 * 14 13 12 16 16 H 1.08008 * 119.99906 * 95.20931 * 15 14 13 17 17 C 1.37882 * 120.00284 * 274.93190 * 15 14 13 18 18 N 1.31518 * 119.99808 * 355.41947 * 17 15 14 19 19 Si 1.86800 * 120.00242 * 175.41794 * 17 15 14 20 20 H 1.48502 * 109.47002 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47091 * 119.99801 * 19 17 15 22 22 H 1.48497 * 109.47138 * 240.00628 * 19 17 15 23 23 C 1.53003 * 117.49932 * 80.48439 * 14 13 12 24 24 C 1.52998 * 117.49502 * 149.14583 * 14 13 12 25 25 H 1.09004 * 109.47101 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47340 * 299.99850 * 1 2 3 27 27 H 1.09007 * 109.47152 * 60.00047 * 1 2 3 28 28 H 1.09006 * 109.46950 * 60.00214 * 3 2 1 29 29 H 1.08995 * 109.47796 * 299.99992 * 3 2 1 30 30 H 1.09006 * 109.47303 * 60.00514 * 4 3 2 31 31 H 1.08998 * 109.47486 * 300.00067 * 4 3 2 32 32 H 1.09006 * 109.47219 * 175.00127 * 7 5 4 33 33 H 1.08995 * 109.47494 * 295.00013 * 7 5 4 34 34 H 0.96690 * 114.00197 * 179.97438 * 8 7 5 35 35 H 0.96996 * 119.99936 * 334.99831 * 9 5 4 36 36 H 0.97004 * 119.99767 * 359.97438 * 12 10 9 37 37 H 1.08993 * 109.47604 * 64.79661 * 13 12 10 38 38 H 1.09000 * 109.47101 * 304.78675 * 13 12 10 39 39 H 0.97001 * 119.99858 * 184.99726 * 18 17 15 40 40 H 1.08997 * 117.49622 * 214.99831 * 23 14 13 41 41 H 1.09000 * 117.49928 * 0.02562 * 23 14 13 42 42 H 1.08996 * 117.50254 * 359.97148 * 24 14 13 43 43 H 1.09005 * 117.49689 * 144.97447 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1577 2.5824 0.0000 6 1 3.7667 3.1546 0.8414 7 6 5.6778 2.4639 0.1264 8 8 6.1775 1.6173 -0.9108 9 7 3.8235 3.2652 -1.2523 10 6 3.8029 4.6120 -1.3008 11 8 4.0613 5.2602 -0.3052 12 7 3.4949 5.2402 -2.4528 13 6 3.4731 6.7040 -2.5057 14 6 2.9821 7.1573 -3.8821 15 6 3.8803 6.8073 -5.0403 16 1 3.6970 5.9109 -5.6142 17 6 4.9328 7.6344 -5.3710 18 7 5.0994 8.7732 -4.7345 19 14 6.1221 7.1375 -6.7231 20 1 5.7175 5.8213 -7.2791 21 1 6.0997 8.1579 -7.8017 22 1 7.4941 7.0384 -6.1637 23 6 1.4725 7.1497 -4.1313 24 6 2.2134 8.4780 -3.9581 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.6885 1.8464 0.8901 29 1 1.6886 1.8464 -0.8899 30 1 3.8574 0.6437 -0.8892 31 1 3.8567 0.6439 0.8908 32 1 6.1281 3.4526 0.0368 33 1 5.9296 2.0367 1.0970 34 1 7.1367 1.4971 -0.8924 35 1 3.6170 2.7481 -2.0465 36 1 3.2885 4.7229 -3.2470 37 1 4.4782 7.0889 -2.3337 38 1 2.8014 7.0854 -1.7366 39 1 5.7951 9.3882 -5.0148 40 1 1.1292 6.8916 -5.1331 41 1 0.8292 6.8222 -3.3146 42 1 2.0572 9.0237 -3.0277 43 1 2.3578 9.0939 -4.8459 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355745991.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:42 Heat of formation + Delta-G solvation = -110.528315 kcal Electronic energy + Delta-G solvation = -23258.122583 eV Core-core repulsion = 19725.206455 eV Total energy + Delta-G solvation = -3532.916129 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.72794 -38.17891 -37.28098 -36.56878 -34.76160 -33.26370 -31.96043 -31.37045 -28.51859 -26.37567 -26.12985 -25.02919 -23.20387 -21.30172 -20.94004 -20.21120 -19.38272 -17.89758 -17.30560 -16.66309 -16.30899 -16.13126 -15.68230 -15.16390 -14.95233 -14.66853 -14.35170 -14.02212 -13.84198 -13.64566 -13.37052 -12.89655 -12.66822 -12.40400 -11.95705 -11.80978 -11.55981 -11.44117 -11.17944 -11.10832 -10.99730 -10.92881 -10.51140 -10.23137 -10.05545 -9.83454 -9.70961 -9.44307 -9.02327 -8.84494 -8.47716 -8.22707 -7.98118 -6.06533 -4.15942 3.19932 3.25465 3.34648 3.36770 3.52267 3.76342 4.29185 4.35912 4.77208 4.82945 4.89750 4.98654 5.12848 5.16760 5.21641 5.30636 5.35276 5.38809 5.41481 5.45722 5.56689 5.80727 5.84970 6.03664 6.10208 6.35673 6.48919 6.59968 6.71455 6.79900 6.86746 6.97003 7.12885 7.33673 7.42705 7.47327 7.58744 7.64017 7.82399 8.35313 8.66944 8.85519 9.19953 9.51123 11.00667 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.016113 B = 0.004072 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.325294 B = 6874.447752 C = 7592.694417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.394 6.394 3 C 0.060 3.940 4 C -0.119 4.119 5 C 0.173 3.827 6 H 0.099 0.901 7 C 0.063 3.937 8 O -0.568 6.568 9 N -0.743 5.743 10 C 0.698 3.302 11 O -0.608 6.608 12 N -0.720 5.720 13 C 0.183 3.817 14 C 0.024 3.976 15 C -0.498 4.498 16 H 0.060 0.940 17 C 0.073 3.927 18 N -0.875 5.875 19 Si 0.890 3.110 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.284 1.284 23 C -0.211 4.211 24 C -0.142 4.142 25 H 0.084 0.916 26 H 0.040 0.960 27 H 0.042 0.958 28 H 0.049 0.951 29 H 0.053 0.947 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.057 0.943 33 H 0.050 0.950 34 H 0.376 0.624 35 H 0.396 0.604 36 H 0.397 0.603 37 H 0.064 0.936 38 H 0.037 0.963 39 H 0.260 0.740 40 H 0.077 0.923 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.052 -14.675 8.672 17.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.313 6.313 3 C -0.017 4.017 4 C -0.157 4.157 5 C 0.067 3.933 6 H 0.117 0.883 7 C -0.016 4.016 8 O -0.373 6.373 9 N -0.400 5.400 10 C 0.398 3.602 11 O -0.488 6.488 12 N -0.372 5.372 13 C 0.059 3.941 14 C 0.023 3.977 15 C -0.535 4.535 16 H 0.078 0.922 17 C -0.131 4.131 18 N -0.511 5.511 19 Si 0.718 3.282 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.210 1.210 23 C -0.248 4.248 24 C -0.180 4.180 25 H 0.102 0.898 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.104 0.896 31 H 0.101 0.899 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.223 0.777 35 H 0.230 0.770 36 H 0.230 0.770 37 H 0.082 0.918 38 H 0.055 0.945 39 H 0.070 0.930 40 H 0.095 0.905 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.186 -14.078 9.480 17.481 hybrid contribution 0.936 -0.222 -1.329 1.640 sum -3.250 -14.300 8.152 16.778 Atomic orbital electron populations 1.22728 0.81079 1.02553 1.00122 1.87845 1.19682 1.28291 1.95484 1.22584 0.94021 0.84355 1.00721 1.21674 0.92864 0.96436 1.04712 1.20712 0.92424 0.92047 0.88108 0.88281 1.22668 0.94957 0.94186 0.89796 1.86457 1.26891 1.70286 1.53662 1.45120 1.76524 1.05053 1.13282 1.16072 0.78364 0.81385 0.84371 1.90855 1.57659 1.65283 1.35008 1.45165 1.72895 1.08719 1.10449 1.20841 1.00723 0.76258 0.96289 1.19063 0.88179 0.97559 0.92877 1.20381 1.10943 1.08918 1.13292 0.92215 1.24986 0.97096 0.94988 0.96028 1.70004 1.32787 1.08697 1.39596 0.86574 0.81272 0.78670 0.81688 1.19730 1.21072 1.20988 1.23009 0.97218 1.04465 1.00128 1.22463 1.04124 0.90524 1.00876 0.89759 0.94148 0.93963 0.93303 0.92829 0.89606 0.89924 0.92504 0.93176 0.77709 0.76977 0.76954 0.91787 0.94455 0.92967 0.90459 0.91777 0.91827 0.89531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.39 -4.49 10.70 -35.23 -0.38 -4.86 16 3 C 0.06 0.64 5.83 37.16 0.22 0.86 16 4 C -0.12 -1.25 4.84 -26.73 -0.13 -1.38 16 5 C 0.17 2.15 2.37 -67.93 -0.16 1.98 16 6 H 0.10 1.31 7.58 -51.93 -0.39 0.92 16 7 C 0.06 0.74 6.85 37.15 0.25 1.00 16 8 O -0.57 -6.47 12.83 -35.23 -0.45 -6.93 16 9 N -0.74 -10.67 4.48 -58.68 -0.26 -10.93 16 10 C 0.70 13.16 8.53 -86.91 -0.74 12.42 16 11 O -0.61 -13.54 16.00 5.30 0.08 -13.46 16 12 N -0.72 -14.09 5.48 -65.23 -0.36 -14.45 16 13 C 0.18 4.17 5.50 -4.04 -0.02 4.15 16 14 C 0.02 0.57 1.47 -155.66 -0.23 0.34 16 15 C -0.50 -12.81 8.59 -34.44 -0.30 -13.10 16 16 H 0.06 1.52 7.82 -52.48 -0.41 1.11 16 17 C 0.07 1.94 5.43 -17.82 -0.10 1.84 16 18 N -0.87 -24.27 12.65 55.43 0.70 -23.57 16 19 Si 0.89 20.66 29.54 -169.99 -5.02 15.63 16 20 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 C -0.21 -4.41 9.96 -26.69 -0.27 -4.67 16 24 C -0.14 -3.26 9.14 -26.69 -0.24 -3.50 16 25 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.04 0.34 8.14 -51.92 -0.42 -0.08 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.59 7.75 -51.93 -0.40 0.19 16 30 H 0.09 0.97 7.73 -51.93 -0.40 0.57 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.38 2.82 9.12 45.56 0.42 3.24 16 35 H 0.40 5.07 8.62 -40.82 -0.35 4.72 16 36 H 0.40 7.17 8.34 -40.82 -0.34 6.83 16 37 H 0.06 1.67 8.14 -51.93 -0.42 1.25 16 38 H 0.04 0.85 8.09 -51.93 -0.42 0.43 16 39 H 0.26 6.94 8.32 -40.82 -0.34 6.60 16 40 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 41 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 43 H 0.09 2.13 8.14 -51.93 -0.42 1.71 16 LS Contribution 363.59 15.07 5.48 5.48 Total: -1.00 -31.38 363.59 -7.32 -38.71 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: -6.51 Total: 13.07 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: -0.60 Total: 1.31 kcal Atomic # 7 Polarization: -49.03 SS G_CDS: 0.08 Total: -48.95 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: -0.74 Total: -25.25 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.38 -7.32 -38.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355745991.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.823 kcal (2) G-P(sol) polarization free energy of solvation -31.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds