Wall clock time and date at job start Tue Mar 31 2020 02:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 114.00072 * 2 1 4 4 C 1.52996 * 109.47034 * 180.02562 * 3 2 1 5 5 C 1.53008 * 109.47302 * 180.02562 * 4 3 2 6 6 H 1.09008 * 109.46424 * 304.99607 * 5 4 3 7 7 C 1.52996 * 109.47305 * 184.99738 * 5 4 3 8 8 O 1.42898 * 109.47157 * 304.99673 * 7 5 4 9 9 N 1.46500 * 109.46979 * 64.99463 * 5 4 3 10 10 C 1.34782 * 119.99590 * 205.00340 * 9 5 4 11 11 O 1.21586 * 120.00084 * 0.02562 * 10 9 5 12 12 N 1.34773 * 119.99524 * 180.02562 * 10 9 5 13 13 C 1.46502 * 119.99839 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.47305 * 178.28417 * 13 12 10 15 15 C 1.50701 * 115.54634 * 65.14590 * 14 13 12 16 16 H 1.07995 * 119.99658 * 265.40760 * 15 14 13 17 17 C 1.37870 * 120.00163 * 85.40319 * 15 14 13 18 18 N 1.31522 * 120.00207 * 353.56181 * 17 15 14 19 19 Si 1.86800 * 120.00287 * 173.55698 * 17 15 14 20 20 H 1.48502 * 109.47121 * 59.99774 * 19 17 15 21 21 H 1.48496 * 109.47556 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47082 * 300.00210 * 19 17 15 23 23 C 1.52996 * 117.50035 * 279.47626 * 14 13 12 24 24 C 1.53001 * 117.49916 * 210.81069 * 14 13 12 25 25 H 1.09004 * 109.46815 * 300.00055 * 1 2 3 26 26 H 1.08997 * 109.47059 * 59.99700 * 1 2 3 27 27 H 1.08992 * 109.47013 * 180.02562 * 1 2 3 28 28 H 1.09009 * 109.46884 * 299.99957 * 3 2 1 29 29 H 1.09002 * 109.47254 * 59.99920 * 3 2 1 30 30 H 1.09001 * 109.47298 * 299.99033 * 4 3 2 31 31 H 1.09002 * 109.47559 * 59.99624 * 4 3 2 32 32 H 1.09000 * 109.47051 * 64.99601 * 7 5 4 33 33 H 1.09001 * 109.47077 * 184.99760 * 7 5 4 34 34 H 0.96701 * 113.99943 * 180.02562 * 8 7 5 35 35 H 0.96987 * 120.00269 * 25.00311 * 9 5 4 36 36 H 0.96998 * 120.00775 * 359.97438 * 12 10 9 37 37 H 1.08995 * 109.47201 * 298.29251 * 13 12 10 38 38 H 1.09005 * 109.46873 * 58.28773 * 13 12 10 39 39 H 0.97000 * 120.00019 * 185.07015 * 18 17 15 40 40 H 1.09004 * 117.50128 * 359.97438 * 23 14 13 41 41 H 1.09001 * 117.49789 * 145.02036 * 23 14 13 42 42 H 1.08994 * 117.49717 * 214.97571 * 24 14 13 43 43 H 1.08999 * 117.49654 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1579 2.5824 0.0000 6 1 3.7669 3.1545 -0.8414 7 6 5.6780 2.4638 -0.1263 8 8 6.1776 1.6173 0.9109 9 7 3.8236 3.2652 1.2523 10 6 3.8031 4.6119 1.3008 11 8 4.0616 5.2601 0.3051 12 7 3.4961 5.2401 2.4530 13 6 3.4744 6.7040 2.5059 14 6 3.0581 7.1576 3.9066 15 6 4.0184 6.8094 5.0146 16 1 3.8733 5.9081 5.5915 17 6 5.0823 7.6415 5.2917 18 7 5.3334 8.6699 4.5113 19 14 6.1669 7.3083 6.7756 20 1 6.7867 5.9652 6.6442 21 1 7.2320 8.3402 6.8520 22 1 5.3439 7.3548 8.0108 23 6 1.5644 7.1483 4.2375 24 6 2.2931 8.4774 4.0236 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.6886 1.8464 -0.8901 29 1 1.6887 1.8464 0.8900 30 1 3.8575 0.6437 0.8892 31 1 3.8568 0.6438 -0.8908 32 1 5.9297 2.0365 -1.0969 33 1 6.1282 3.4525 -0.0368 34 1 7.1369 1.4970 0.8925 35 1 3.6171 2.7481 2.0464 36 1 3.2896 4.7230 3.2473 37 1 4.4679 7.0906 2.2790 38 1 2.7610 7.0834 1.7742 39 1 6.1235 9.2120 4.6626 40 1 0.8781 6.8194 3.4571 41 1 1.2763 6.8907 5.2567 42 1 2.4840 9.0936 4.9021 43 1 2.0867 9.0228 3.1027 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355745992.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:44 Heat of formation + Delta-G solvation = -110.335178 kcal Electronic energy + Delta-G solvation = -23256.854581 eV Core-core repulsion = 19723.946827 eV Total energy + Delta-G solvation = -3532.907754 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.70682 -38.17012 -37.27053 -36.56866 -34.74568 -33.24270 -31.96842 -31.35912 -28.50585 -26.37096 -26.09463 -25.03152 -23.19441 -21.31571 -20.95183 -20.19502 -19.37097 -17.88843 -17.29052 -16.65325 -16.29823 -16.12214 -15.67185 -15.15129 -14.93399 -14.65663 -14.34400 -14.03654 -13.82035 -13.64155 -13.35149 -12.88584 -12.68231 -12.38568 -11.94226 -11.77499 -11.56919 -11.43304 -11.16696 -11.09931 -10.98842 -10.90803 -10.54169 -10.26685 -10.03827 -9.83044 -9.71348 -9.49426 -8.96542 -8.82138 -8.48359 -8.24371 -7.95609 -6.06503 -4.15061 3.21735 3.27893 3.33623 3.35239 3.52744 3.78811 4.30879 4.36252 4.78497 4.83810 4.90574 4.99592 5.13273 5.17005 5.21634 5.31372 5.35786 5.37886 5.42475 5.46011 5.57730 5.82436 5.85919 6.03595 6.11013 6.35041 6.48023 6.60538 6.69902 6.81635 6.87418 6.97384 7.09509 7.35206 7.43298 7.48338 7.60119 7.63685 7.82515 8.35323 8.68920 8.85401 9.22330 9.51587 11.01286 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.016376 B = 0.004033 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.367917 B = 6941.224196 C = 7646.662977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.394 6.394 3 C 0.060 3.940 4 C -0.119 4.119 5 C 0.174 3.826 6 H 0.099 0.901 7 C 0.063 3.937 8 O -0.568 6.568 9 N -0.743 5.743 10 C 0.698 3.302 11 O -0.608 6.608 12 N -0.720 5.720 13 C 0.183 3.817 14 C 0.028 3.972 15 C -0.500 4.500 16 H 0.059 0.941 17 C 0.074 3.926 18 N -0.875 5.875 19 Si 0.890 3.110 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C -0.211 4.211 24 C -0.148 4.148 25 H 0.042 0.958 26 H 0.040 0.960 27 H 0.084 0.916 28 H 0.049 0.951 29 H 0.053 0.947 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.050 0.950 33 H 0.057 0.943 34 H 0.376 0.624 35 H 0.396 0.604 36 H 0.396 0.604 37 H 0.069 0.931 38 H 0.034 0.966 39 H 0.262 0.738 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.472 -14.530 -8.325 17.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.313 6.313 3 C -0.017 4.017 4 C -0.157 4.157 5 C 0.067 3.933 6 H 0.117 0.883 7 C -0.016 4.016 8 O -0.373 6.373 9 N -0.400 5.400 10 C 0.398 3.602 11 O -0.488 6.488 12 N -0.372 5.372 13 C 0.059 3.941 14 C 0.028 3.972 15 C -0.538 4.538 16 H 0.077 0.923 17 C -0.130 4.130 18 N -0.511 5.511 19 Si 0.718 3.282 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.248 4.248 24 C -0.186 4.186 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.102 0.898 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.104 0.896 31 H 0.101 0.899 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.223 0.777 35 H 0.230 0.770 36 H 0.229 0.771 37 H 0.087 0.913 38 H 0.052 0.948 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.102 0.898 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.672 -13.860 -9.071 17.211 hybrid contribution 0.912 -0.193 1.360 1.649 sum -3.760 -14.052 -7.712 16.464 Atomic orbital electron populations 1.22725 0.81091 1.02546 1.00114 1.87846 1.19671 1.28305 1.95483 1.22586 0.94033 0.84342 1.00712 1.21674 0.92846 0.96457 1.04705 1.20711 0.92429 0.92024 0.88120 0.88290 1.22668 0.94959 0.94206 0.89777 1.86457 1.26890 1.70281 1.53667 1.45117 1.76556 1.05061 1.13259 1.16065 0.78355 0.81366 0.84384 1.90857 1.57629 1.65275 1.35014 1.45145 1.72899 1.08733 1.10374 1.20838 1.00893 0.76190 0.96181 1.19038 0.88381 0.97179 0.92635 1.20291 1.10362 1.07767 1.15349 0.92301 1.24976 0.97317 0.94510 0.96177 1.69969 1.26236 1.17297 1.37554 0.86695 0.80102 0.77946 0.83443 1.20259 1.21303 1.20219 1.23018 0.97383 1.04190 1.00215 1.22489 1.04555 0.90620 1.00911 0.93974 0.94150 0.89764 0.93303 0.92837 0.89613 0.89930 0.93195 0.92478 0.77709 0.77008 0.77069 0.91265 0.94789 0.92814 0.91690 0.90416 0.89836 0.91664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.39 -4.49 10.70 -35.23 -0.38 -4.87 16 3 C 0.06 0.64 5.83 37.16 0.22 0.86 16 4 C -0.12 -1.26 4.84 -26.73 -0.13 -1.38 16 5 C 0.17 2.17 2.37 -67.93 -0.16 2.01 16 6 H 0.10 1.32 7.58 -51.92 -0.39 0.92 16 7 C 0.06 0.75 6.85 37.16 0.25 1.01 16 8 O -0.57 -6.56 12.83 -35.23 -0.45 -7.01 16 9 N -0.74 -10.76 4.48 -58.67 -0.26 -11.03 16 10 C 0.70 13.28 8.53 -86.92 -0.74 12.54 16 11 O -0.61 -13.66 16.01 5.29 0.08 -13.58 16 12 N -0.72 -14.18 5.48 -65.22 -0.36 -14.53 16 13 C 0.18 4.19 5.50 -4.04 -0.02 4.17 16 14 C 0.03 0.67 1.38 -155.66 -0.21 0.46 16 15 C -0.50 -12.89 8.63 -34.44 -0.30 -13.19 16 16 H 0.06 1.49 7.82 -52.49 -0.41 1.08 16 17 C 0.07 1.98 5.39 -17.82 -0.10 1.88 16 18 N -0.87 -24.34 12.91 55.43 0.72 -23.62 16 19 Si 0.89 20.66 29.55 -169.99 -5.02 15.63 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 23 C -0.21 -4.38 9.96 -26.69 -0.27 -4.64 16 24 C -0.15 -3.37 9.42 -26.69 -0.25 -3.62 16 25 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.51 8.14 -51.92 -0.42 0.08 16 29 H 0.05 0.59 7.75 -51.93 -0.40 0.19 16 30 H 0.09 0.98 7.73 -51.93 -0.40 0.57 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.38 2.88 9.12 45.56 0.42 3.30 16 35 H 0.40 5.11 8.62 -40.82 -0.35 4.76 16 36 H 0.40 7.18 8.38 -40.82 -0.34 6.83 16 37 H 0.07 1.83 8.14 -51.93 -0.42 1.41 16 38 H 0.03 0.77 8.09 -51.93 -0.42 0.35 16 39 H 0.26 7.04 8.32 -40.82 -0.34 6.70 16 40 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 41 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 42 H 0.08 2.03 8.14 -51.93 -0.42 1.60 16 43 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 364.08 15.07 5.49 5.49 Total: -1.00 -31.43 364.08 -7.29 -38.72 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: -6.51 Total: 13.34 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -0.60 Total: 1.47 kcal Atomic # 7 Polarization: -49.28 SS G_CDS: 0.10 Total: -49.18 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: -0.74 Total: -25.46 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.43 -7.29 -38.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355745992.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.613 kcal (2) G-P(sol) polarization free energy of solvation -31.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds