Wall clock time and date at job start Tue Mar 31 2020 02:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 114.00072 * 2 1 4 4 C 1.52996 * 109.47034 * 180.02562 * 3 2 1 5 5 C 1.53008 * 109.47302 * 180.02562 * 4 3 2 6 6 H 1.09008 * 109.46424 * 304.99607 * 5 4 3 7 7 C 1.52996 * 109.47305 * 184.99738 * 5 4 3 8 8 O 1.42898 * 109.47157 * 304.99673 * 7 5 4 9 9 N 1.46500 * 109.46979 * 64.99463 * 5 4 3 10 10 C 1.34782 * 119.99590 * 205.00340 * 9 5 4 11 11 O 1.21586 * 120.00084 * 0.02562 * 10 9 5 12 12 N 1.34773 * 119.99524 * 180.02562 * 10 9 5 13 13 C 1.46502 * 119.99839 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.47305 * 178.28417 * 13 12 10 15 15 C 1.50701 * 115.54634 * 65.14590 * 14 13 12 16 16 H 1.07995 * 119.99658 * 265.40760 * 15 14 13 17 17 C 1.37870 * 120.00163 * 85.40319 * 15 14 13 18 18 N 1.31522 * 120.00207 * 353.56181 * 17 15 14 19 19 Si 1.86800 * 120.00287 * 173.55698 * 17 15 14 20 20 H 1.48502 * 109.47121 * 59.99774 * 19 17 15 21 21 H 1.48496 * 109.47556 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47082 * 300.00210 * 19 17 15 23 23 C 1.52996 * 117.50035 * 279.47626 * 14 13 12 24 24 C 1.53001 * 117.49916 * 210.81069 * 14 13 12 25 25 H 1.09004 * 109.46815 * 300.00055 * 1 2 3 26 26 H 1.08997 * 109.47059 * 59.99700 * 1 2 3 27 27 H 1.08992 * 109.47013 * 180.02562 * 1 2 3 28 28 H 1.09009 * 109.46884 * 299.99957 * 3 2 1 29 29 H 1.09002 * 109.47254 * 59.99920 * 3 2 1 30 30 H 1.09001 * 109.47298 * 299.99033 * 4 3 2 31 31 H 1.09002 * 109.47559 * 59.99624 * 4 3 2 32 32 H 1.09000 * 109.47051 * 64.99601 * 7 5 4 33 33 H 1.09001 * 109.47077 * 184.99760 * 7 5 4 34 34 H 0.96701 * 113.99943 * 180.02562 * 8 7 5 35 35 H 0.96987 * 120.00269 * 25.00311 * 9 5 4 36 36 H 0.96998 * 120.00775 * 359.97438 * 12 10 9 37 37 H 1.08995 * 109.47201 * 298.29251 * 13 12 10 38 38 H 1.09005 * 109.46873 * 58.28773 * 13 12 10 39 39 H 0.97000 * 120.00019 * 185.07015 * 18 17 15 40 40 H 1.09004 * 117.50128 * 359.97438 * 23 14 13 41 41 H 1.09001 * 117.49789 * 145.02036 * 23 14 13 42 42 H 1.08994 * 117.49717 * 214.97571 * 24 14 13 43 43 H 1.08999 * 117.49654 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1579 2.5824 0.0000 6 1 3.7669 3.1545 -0.8414 7 6 5.6780 2.4638 -0.1263 8 8 6.1776 1.6173 0.9109 9 7 3.8236 3.2652 1.2523 10 6 3.8031 4.6119 1.3008 11 8 4.0616 5.2601 0.3051 12 7 3.4961 5.2401 2.4530 13 6 3.4744 6.7040 2.5059 14 6 3.0581 7.1576 3.9066 15 6 4.0184 6.8094 5.0146 16 1 3.8733 5.9081 5.5915 17 6 5.0823 7.6415 5.2917 18 7 5.3334 8.6699 4.5113 19 14 6.1669 7.3083 6.7756 20 1 6.7867 5.9652 6.6442 21 1 7.2320 8.3402 6.8520 22 1 5.3439 7.3548 8.0108 23 6 1.5644 7.1483 4.2375 24 6 2.2931 8.4774 4.0236 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.6886 1.8464 -0.8901 29 1 1.6887 1.8464 0.8900 30 1 3.8575 0.6437 0.8892 31 1 3.8568 0.6438 -0.8908 32 1 5.9297 2.0365 -1.0969 33 1 6.1282 3.4525 -0.0368 34 1 7.1369 1.4970 0.8925 35 1 3.6171 2.7481 2.0464 36 1 3.2896 4.7230 3.2473 37 1 4.4679 7.0906 2.2790 38 1 2.7610 7.0834 1.7742 39 1 6.1235 9.2120 4.6626 40 1 0.8781 6.8194 3.4571 41 1 1.2763 6.8907 5.2567 42 1 2.4840 9.0936 4.9021 43 1 2.0867 9.0228 3.1027 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355745992.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:44 Heat of formation + Delta-G solvation = -135.006422 kcal Electronic energy + Delta-G solvation = -23257.924406 eV Core-core repulsion = 19723.946827 eV Total energy + Delta-G solvation = -3533.977579 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.11917 -39.19541 -38.55904 -37.95431 -35.84369 -34.91682 -33.95742 -32.49718 -29.48075 -27.91704 -27.09808 -26.88190 -24.10932 -22.98922 -22.22294 -21.53968 -21.18869 -19.34173 -18.32163 -18.08536 -17.42763 -17.19821 -16.78402 -16.64768 -16.35797 -16.09408 -15.79024 -15.44348 -15.08629 -14.86095 -14.60040 -14.38526 -13.94345 -13.66959 -13.48182 -13.24074 -12.91957 -12.78976 -12.69531 -12.38373 -12.27791 -12.10250 -12.03297 -11.96149 -11.49201 -11.26637 -10.90632 -10.84445 -10.62658 -10.44423 -10.24004 -10.02482 -9.56975 -8.08323 -6.21296 1.43970 1.45188 1.51626 1.83895 2.27497 2.43539 2.74650 3.19682 3.33179 3.43532 3.63607 3.94999 4.02800 4.09385 4.26639 4.37177 4.46298 4.51968 4.53074 4.56325 4.57929 4.64041 4.67432 4.75931 4.83281 4.87291 4.97251 5.00711 5.05288 5.21297 5.28735 5.59568 5.61187 5.64069 5.74160 5.80376 6.17643 6.21209 6.38477 6.85159 6.88443 7.25028 7.47924 7.71065 8.98974 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.016376 B = 0.004033 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.367917 B = 6941.224196 C = 7646.662977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.411 6.411 3 C 0.060 3.940 4 C -0.104 4.104 5 C 0.169 3.831 6 H 0.091 0.909 7 C 0.068 3.932 8 O -0.578 6.578 9 N -0.725 5.725 10 C 0.698 3.302 11 O -0.644 6.644 12 N -0.717 5.717 13 C 0.201 3.799 14 C 0.006 3.994 15 C -0.505 4.505 16 H 0.062 0.938 17 C 0.026 3.974 18 N -0.907 5.907 19 Si 0.949 3.051 20 H -0.273 1.273 21 H -0.291 1.291 22 H -0.270 1.270 23 C -0.176 4.176 24 C -0.158 4.158 25 H 0.044 0.956 26 H 0.047 0.953 27 H 0.100 0.900 28 H 0.052 0.948 29 H 0.048 0.952 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.080 0.920 33 H 0.026 0.974 34 H 0.394 0.606 35 H 0.406 0.594 36 H 0.405 0.595 37 H 0.025 0.975 38 H 0.033 0.967 39 H 0.259 0.741 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.063 0.937 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.204 -16.658 -8.087 19.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.331 6.331 3 C -0.016 4.016 4 C -0.142 4.142 5 C 0.063 3.937 6 H 0.109 0.891 7 C -0.011 4.011 8 O -0.386 6.386 9 N -0.381 5.381 10 C 0.398 3.602 11 O -0.527 6.527 12 N -0.370 5.370 13 C 0.076 3.924 14 C 0.005 3.995 15 C -0.542 4.542 16 H 0.080 0.920 17 C -0.175 4.175 18 N -0.545 5.545 19 Si 0.775 3.225 20 H -0.198 1.198 21 H -0.217 1.217 22 H -0.195 1.195 23 C -0.213 4.213 24 C -0.197 4.197 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.118 0.882 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.100 0.900 31 H 0.116 0.884 32 H 0.098 0.902 33 H 0.044 0.956 34 H 0.243 0.757 35 H 0.242 0.758 36 H 0.240 0.760 37 H 0.043 0.957 38 H 0.051 0.949 39 H 0.068 0.932 40 H 0.107 0.893 41 H 0.104 0.896 42 H 0.082 0.918 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.409 -16.057 -8.812 19.098 hybrid contribution 1.113 0.406 1.249 1.721 sum -4.295 -15.651 -7.564 17.906 Atomic orbital electron populations 1.22915 0.79722 1.03834 1.00633 1.87813 1.21244 1.28415 1.95579 1.22563 0.94084 0.84351 1.00631 1.21535 0.92659 0.94808 1.05209 1.20909 0.93293 0.92763 0.86699 0.89087 1.22553 0.94103 0.93067 0.91405 1.86409 1.28677 1.69827 1.53695 1.45009 1.75162 1.03385 1.14568 1.16181 0.77975 0.82575 0.83508 1.90831 1.59167 1.66506 1.36205 1.44936 1.73312 1.07582 1.11122 1.20378 0.98209 0.77958 0.95873 1.19054 0.89993 0.98164 0.92298 1.20612 1.10529 1.07534 1.15547 0.91975 1.25685 0.98849 0.94556 0.98423 1.70099 1.26720 1.18418 1.39242 0.85762 0.78438 0.77630 0.80648 1.19787 1.21726 1.19502 1.23000 0.95572 1.01379 1.01349 1.22432 1.05762 0.91039 1.00446 0.93698 0.93386 0.88192 0.93004 0.93354 0.90018 0.88379 0.90164 0.95574 0.75709 0.75795 0.76014 0.95686 0.94869 0.93250 0.89318 0.89614 0.91811 0.91074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 113.37 1.25 1.62 16 2 O -0.41 -8.56 10.70 -148.98 -1.59 -10.15 16 3 C 0.06 1.19 5.83 71.98 0.42 1.61 16 4 C -0.10 -1.98 4.84 30.60 0.15 -1.83 16 5 C 0.17 3.99 2.37 44.99 0.11 4.10 16 6 H 0.09 2.35 7.58 -2.38 -0.02 2.33 16 7 C 0.07 1.53 6.85 71.98 0.49 2.02 16 8 O -0.58 -12.27 12.83 -148.98 -1.91 -14.18 16 9 N -0.73 -20.28 4.48 -457.79 -2.05 -22.33 16 10 C 0.70 26.42 8.53 179.05 1.53 27.95 16 11 O -0.64 -29.37 16.01 -3.99 -0.06 -29.44 16 12 N -0.72 -28.02 5.48 -478.53 -2.62 -30.64 16 13 C 0.20 9.33 5.50 86.38 0.48 9.81 16 14 C 0.01 0.27 1.38 -52.93 -0.07 0.19 16 15 C -0.50 -25.82 8.63 25.60 0.22 -25.60 16 16 H 0.06 3.07 7.82 -2.91 -0.02 3.05 16 17 C 0.03 1.36 5.39 84.65 0.46 1.82 16 18 N -0.91 -51.54 12.91 21.45 0.28 -51.26 16 19 Si 0.95 42.40 29.55 68.60 2.03 44.42 16 20 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 21 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 22 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 23 C -0.18 -6.96 9.96 30.62 0.30 -6.65 16 24 C -0.16 -7.22 9.42 30.62 0.29 -6.93 16 25 H 0.04 0.64 8.14 -2.38 -0.02 0.62 16 26 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 29 H 0.05 0.99 7.75 -2.39 -0.02 0.97 16 30 H 0.08 1.67 7.73 -2.39 -0.02 1.65 16 31 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.39 5.27 9.12 -74.06 -0.68 4.59 16 35 H 0.41 9.84 8.62 -92.72 -0.80 9.04 16 36 H 0.40 14.24 8.38 -92.71 -0.78 13.46 16 37 H 0.02 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.03 1.52 8.09 -2.38 -0.02 1.50 16 39 H 0.26 14.24 8.32 -92.71 -0.77 13.46 16 40 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 41 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 42 H 0.06 3.13 8.14 -2.39 -0.02 3.11 16 43 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16 Total: -1.00 -67.54 364.08 -1.56 -69.09 By element: Atomic # 1 Polarization: 37.62 SS G_CDS: -1.23 Total: 36.39 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: 5.61 Total: 8.10 kcal Atomic # 7 Polarization: -99.83 SS G_CDS: -4.40 Total: -104.23 kcal Atomic # 8 Polarization: -50.20 SS G_CDS: -3.57 Total: -53.77 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.42 kcal Total: -67.54 -1.56 -69.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355745992.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.915 kcal (2) G-P(sol) polarization free energy of solvation -67.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds