Wall clock time and date at job start Tue Mar 31 2020 03:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34242 * 116.99352 * 2 1 4 4 O 1.20819 * 119.99991 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99530 * 180.02562 * 3 2 1 6 6 N 1.46503 * 109.46878 * 180.02562 * 5 3 2 7 7 C 1.36939 * 119.99560 * 269.99865 * 6 5 3 8 8 H 1.07998 * 119.99877 * 187.78791 * 7 6 5 9 9 C 1.38812 * 120.00220 * 7.78527 * 7 6 5 10 10 N 1.31625 * 119.99749 * 25.58791 * 9 7 6 11 11 Si 1.86796 * 120.00274 * 205.58644 * 9 7 6 12 12 H 1.48503 * 109.46864 * 359.97438 * 11 9 7 13 13 H 1.48495 * 109.47497 * 120.00134 * 11 9 7 14 14 H 1.48501 * 109.46967 * 240.00404 * 11 9 7 15 15 C 1.46500 * 120.00289 * 89.99619 * 6 5 3 16 16 C 1.52999 * 109.46954 * 271.84949 * 15 6 5 17 17 N 1.46906 * 109.46706 * 180.02562 * 16 15 6 18 18 C 1.48027 * 110.99617 * 169.99962 * 17 16 15 19 19 C 1.50978 * 113.13222 * 83.99773 * 18 17 16 20 20 C 1.54707 * 109.08122 * 92.04357 * 19 18 17 21 21 O 1.36612 * 110.79197 * 286.64732 * 20 19 18 22 22 C 1.43455 * 117.83675 * 61.03612 * 21 20 19 23 23 C 1.47389 * 110.99622 * 297.17758 * 17 16 15 24 24 H 1.09008 * 109.46815 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47451 * 299.99314 * 1 2 3 26 26 H 1.09002 * 109.47497 * 60.00587 * 1 2 3 27 27 H 1.08993 * 109.47363 * 60.00279 * 5 3 2 28 28 H 1.09007 * 109.46852 * 299.99524 * 5 3 2 29 29 H 0.97002 * 119.99701 * 180.02562 * 10 9 7 30 30 H 1.09000 * 109.46569 * 151.84860 * 15 6 5 31 31 H 1.08996 * 109.47164 * 31.84625 * 15 6 5 32 32 H 1.08991 * 109.47644 * 59.99915 * 16 15 6 33 33 H 1.09007 * 109.47333 * 299.99552 * 16 15 6 34 34 H 1.08996 * 108.75224 * 323.04757 * 18 17 16 35 35 H 1.08999 * 108.75097 * 204.93719 * 18 17 16 36 36 H 1.09005 * 109.53645 * 332.15866 * 19 18 17 37 37 H 1.09002 * 109.60477 * 211.96334 * 19 18 17 38 38 H 1.09001 * 109.21677 * 166.31068 * 20 19 18 39 39 H 1.08992 * 109.21473 * 46.98339 * 20 19 18 40 40 H 1.09003 * 109.83715 * 37.43526 * 22 21 20 41 41 H 1.08999 * 109.83879 * 158.40713 * 22 21 20 42 42 H 1.09004 * 109.06732 * 313.80703 * 23 17 16 43 43 H 1.09004 * 109.06489 * 72.80864 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1962 0.0000 4 8 1.4031 2.2094 -0.0005 5 6 3.5662 1.2751 -0.0006 6 7 3.9815 2.6800 0.0002 7 6 4.1751 3.3373 -1.1855 8 1 4.6006 4.3299 -1.1894 9 6 3.8244 2.7278 -2.3823 10 7 2.8889 1.8020 -2.4000 11 14 4.6800 3.2215 -3.9677 12 1 5.6849 4.2763 -3.6801 13 1 5.3581 2.0375 -4.5537 14 1 3.6765 3.7437 -4.9298 15 6 4.1896 3.3817 1.2692 16 6 2.8680 3.9960 1.7350 17 7 3.0769 4.7002 3.0072 18 6 1.8884 5.5048 3.3695 19 6 0.8225 4.7031 4.0771 20 6 1.0469 4.8006 5.6047 21 8 2.1261 4.0542 5.9849 22 6 3.4055 4.3974 5.4342 23 6 3.4974 3.7647 4.0657 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3634 0.5137 0.8901 26 1 -0.3634 0.5137 -0.8900 27 1 3.9556 0.7813 -0.8908 28 1 3.9563 0.7808 0.8893 29 1 2.6442 1.3758 -3.2363 30 1 4.9284 4.1711 1.1309 31 1 4.5470 2.6768 2.0198 32 1 2.1292 3.2067 1.8732 33 1 2.5105 4.7010 0.9844 34 1 1.4621 5.9291 2.4604 35 1 2.2027 6.3209 4.0201 36 1 0.8837 3.6603 3.7654 37 1 -0.1609 5.1011 3.8270 38 1 0.1590 4.4367 6.1217 39 1 1.2177 5.8422 5.8764 40 1 3.4924 5.4805 5.3476 41 1 4.1991 4.0117 6.0741 42 1 2.8566 2.8834 4.0373 43 1 4.5283 3.4610 3.8836 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361313607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:31 Heat of formation + Delta-G solvation = -87.371812 kcal Electronic energy + Delta-G solvation = -24673.793707 eV Core-core repulsion = 21141.881719 eV Total energy + Delta-G solvation = -3531.911987 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.90261 -38.94647 -36.79820 -35.58967 -34.47038 -32.50803 -31.55711 -29.64893 -28.10199 -26.84736 -26.00351 -25.60201 -23.17435 -21.99156 -21.11022 -19.80497 -19.35115 -16.97299 -16.66409 -16.49780 -16.22613 -15.94255 -15.48777 -15.13079 -14.74262 -14.55201 -14.29587 -13.74239 -13.48839 -13.08189 -12.77380 -12.49775 -12.43584 -12.16747 -12.03394 -11.67717 -11.59082 -11.32157 -11.10510 -11.00186 -10.82589 -10.76585 -10.50092 -10.35905 -10.15914 -9.98146 -9.83867 -9.58255 -9.51813 -9.07990 -8.50775 -7.85729 -7.13569 -5.94373 -3.19529 3.35720 3.44316 3.46873 3.76901 3.87963 4.05570 4.17630 4.50937 4.82460 4.99069 5.03541 5.22712 5.27917 5.28899 5.37502 5.46215 5.52199 5.71729 5.79166 5.83029 5.85042 5.92508 6.01633 6.03016 6.08604 6.13120 6.19607 6.27808 6.32422 6.44898 6.62437 6.78013 6.99230 7.08225 7.37569 7.49834 7.61361 7.70381 7.79451 8.15567 9.01424 9.39333 9.71786 10.12019 11.17280 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.018178 B = 0.005337 C = 0.004566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.962496 B = 5244.743414 C = 6130.927426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.383 6.383 3 C 0.465 3.535 4 O -0.506 6.506 5 C 0.187 3.813 6 N -0.567 5.567 7 C -0.248 4.248 8 H 0.083 0.917 9 C -0.001 4.001 10 N -0.904 5.904 11 Si 0.907 3.093 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.293 1.293 15 C 0.151 3.849 16 C 0.041 3.959 17 N -0.545 5.545 18 C 0.054 3.946 19 C -0.194 4.194 20 C 0.079 3.921 21 O -0.390 6.390 22 C 0.064 3.936 23 C 0.024 3.976 24 H 0.079 0.921 25 H 0.042 0.958 26 H 0.052 0.948 27 H 0.115 0.885 28 H 0.050 0.950 29 H 0.256 0.744 30 H 0.061 0.939 31 H 0.038 0.962 32 H 0.036 0.964 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.036 0.964 40 H 0.064 0.936 41 H 0.098 0.902 42 H 0.044 0.956 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.366 1.427 12.958 13.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.301 6.301 3 C 0.305 3.695 4 O -0.391 6.391 5 C 0.057 3.943 6 N -0.286 5.286 7 C -0.377 4.377 8 H 0.101 0.899 9 C -0.199 4.199 10 N -0.550 5.550 11 Si 0.737 3.263 12 H -0.202 1.202 13 H -0.215 1.215 14 H -0.221 1.221 15 C 0.024 3.976 16 C -0.088 4.088 17 N -0.270 5.270 18 C -0.075 4.075 19 C -0.233 4.233 20 C 0.001 3.999 21 O -0.308 6.308 22 C -0.012 4.012 23 C -0.104 4.104 24 H 0.098 0.902 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.133 0.867 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.106 0.894 39 H 0.054 0.946 40 H 0.082 0.918 41 H 0.116 0.884 42 H 0.063 0.937 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.250 1.857 12.855 13.049 hybrid contribution -1.061 0.019 -1.301 1.679 sum -2.310 1.876 11.554 11.931 Atomic orbital electron populations 1.22828 0.80072 1.01203 1.01062 1.86561 1.20792 1.36956 1.85767 1.25627 0.93577 0.80163 0.70109 1.90439 1.66666 1.36372 1.45608 1.20544 0.85493 0.86769 1.01493 1.44332 1.75178 1.07204 1.01929 1.19371 1.34461 1.01061 0.82761 0.89880 1.24741 0.97623 0.99507 0.97997 1.69864 1.28195 1.30671 1.26244 0.86139 0.79304 0.77733 0.83151 1.20232 1.21456 1.22075 1.20958 0.94557 0.95060 0.86999 1.23031 1.00094 0.97353 0.88323 1.62359 1.33785 1.27136 1.03758 1.21970 0.89293 0.96080 1.00111 1.22864 1.00608 1.02622 0.97222 1.21802 0.89259 0.94945 0.93936 1.86417 1.15756 1.58908 1.69705 1.22598 0.84532 1.00160 0.93876 1.22503 1.01716 0.95078 0.91057 0.90236 0.93879 0.92924 0.86694 0.93173 0.93303 0.92038 0.94330 0.94592 0.90809 0.91123 0.91761 0.90927 0.90813 0.89449 0.94574 0.91798 0.88373 0.93749 0.89810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.79 10.55 101.05 1.07 1.86 16 2 O -0.38 -8.46 10.57 -39.29 -0.42 -8.88 16 3 C 0.47 11.34 5.89 36.01 0.21 11.55 16 4 O -0.51 -13.58 13.52 -18.74 -0.25 -13.83 16 5 C 0.19 4.35 5.58 -5.19 -0.03 4.32 16 6 N -0.57 -13.61 2.09 -174.61 -0.37 -13.98 16 7 C -0.25 -6.55 9.70 -15.06 -0.15 -6.70 16 8 H 0.08 2.18 7.92 -52.49 -0.42 1.76 16 9 C 0.00 -0.04 4.89 -17.43 -0.09 -0.12 16 10 N -0.90 -25.36 9.01 55.49 0.50 -24.86 16 11 Si 0.91 21.39 29.62 -169.99 -5.04 16.36 16 12 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 13 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 14 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 15 C 0.15 3.06 5.56 -4.04 -0.02 3.04 16 16 C 0.04 0.82 4.35 -3.82 -0.02 0.80 16 17 N -0.54 -8.81 4.77 -235.72 -1.12 -9.94 16 18 C 0.05 0.78 5.13 -4.22 -0.02 0.75 16 19 C -0.19 -2.61 5.67 -26.85 -0.15 -2.76 16 20 C 0.08 0.92 6.43 38.06 0.24 1.17 16 21 O -0.39 -5.17 9.95 -21.72 -0.22 -5.39 16 22 C 0.06 0.76 6.50 36.17 0.24 1.00 16 23 C 0.02 0.35 4.42 -4.54 -0.02 0.33 16 24 H 0.08 1.13 8.14 -51.92 -0.42 0.71 16 25 H 0.04 0.75 8.13 -51.93 -0.42 0.33 16 26 H 0.05 1.02 8.13 -51.93 -0.42 0.60 16 27 H 0.12 2.89 6.27 -51.93 -0.33 2.56 16 28 H 0.05 1.01 7.91 -51.93 -0.41 0.60 16 29 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.06 1.24 8.00 -51.93 -0.42 0.82 16 31 H 0.04 0.70 6.54 -51.93 -0.34 0.36 16 32 H 0.04 0.80 5.97 -51.93 -0.31 0.49 16 33 H 0.07 1.69 7.80 -51.93 -0.40 1.28 16 34 H 0.07 1.09 7.65 -51.93 -0.40 0.69 16 35 H 0.06 0.83 6.54 -51.93 -0.34 0.49 16 36 H 0.07 1.17 6.83 -51.93 -0.35 0.82 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.04 0.38 7.72 -51.93 -0.40 -0.02 16 40 H 0.06 0.73 6.78 -51.93 -0.35 0.38 16 41 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 42 H 0.04 0.72 7.05 -51.93 -0.37 0.35 16 43 H 0.08 1.13 7.07 -51.93 -0.37 0.76 16 LS Contribution 332.73 15.07 5.01 5.01 Total: -1.00 -30.65 332.73 -7.50 -38.15 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -6.87 Total: 2.12 kcal Atomic # 6 Polarization: 13.97 SS G_CDS: 1.27 Total: 15.23 kcal Atomic # 7 Polarization: -47.79 SS G_CDS: -0.99 Total: -48.77 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: -0.88 Total: -28.10 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.04 Total: 16.36 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.65 -7.50 -38.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361313607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.224 kcal (2) G-P(sol) polarization free energy of solvation -30.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds