Wall clock time and date at job start Tue Mar 31 2020 03:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34242 * 116.99352 * 2 1 4 4 O 1.20819 * 119.99991 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99530 * 180.02562 * 3 2 1 6 6 N 1.46503 * 109.46878 * 180.02562 * 5 3 2 7 7 C 1.36939 * 119.99560 * 269.99865 * 6 5 3 8 8 H 1.07998 * 119.99877 * 187.78791 * 7 6 5 9 9 C 1.38812 * 120.00220 * 7.78527 * 7 6 5 10 10 N 1.31625 * 119.99749 * 25.58791 * 9 7 6 11 11 Si 1.86796 * 120.00274 * 205.58644 * 9 7 6 12 12 H 1.48503 * 109.46864 * 359.97438 * 11 9 7 13 13 H 1.48495 * 109.47497 * 120.00134 * 11 9 7 14 14 H 1.48501 * 109.46967 * 240.00404 * 11 9 7 15 15 C 1.46500 * 120.00289 * 89.99619 * 6 5 3 16 16 C 1.52999 * 109.46954 * 271.84949 * 15 6 5 17 17 N 1.46906 * 109.46706 * 180.02562 * 16 15 6 18 18 C 1.48027 * 110.99617 * 169.99962 * 17 16 15 19 19 C 1.50978 * 113.13222 * 83.99773 * 18 17 16 20 20 C 1.54707 * 109.08122 * 92.04357 * 19 18 17 21 21 O 1.36612 * 110.79197 * 286.64732 * 20 19 18 22 22 C 1.43455 * 117.83675 * 61.03612 * 21 20 19 23 23 C 1.47389 * 110.99622 * 297.17758 * 17 16 15 24 24 H 1.09008 * 109.46815 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47451 * 299.99314 * 1 2 3 26 26 H 1.09002 * 109.47497 * 60.00587 * 1 2 3 27 27 H 1.08993 * 109.47363 * 60.00279 * 5 3 2 28 28 H 1.09007 * 109.46852 * 299.99524 * 5 3 2 29 29 H 0.97002 * 119.99701 * 180.02562 * 10 9 7 30 30 H 1.09000 * 109.46569 * 151.84860 * 15 6 5 31 31 H 1.08996 * 109.47164 * 31.84625 * 15 6 5 32 32 H 1.08991 * 109.47644 * 59.99915 * 16 15 6 33 33 H 1.09007 * 109.47333 * 299.99552 * 16 15 6 34 34 H 1.08996 * 108.75224 * 323.04757 * 18 17 16 35 35 H 1.08999 * 108.75097 * 204.93719 * 18 17 16 36 36 H 1.09005 * 109.53645 * 332.15866 * 19 18 17 37 37 H 1.09002 * 109.60477 * 211.96334 * 19 18 17 38 38 H 1.09001 * 109.21677 * 166.31068 * 20 19 18 39 39 H 1.08992 * 109.21473 * 46.98339 * 20 19 18 40 40 H 1.09003 * 109.83715 * 37.43526 * 22 21 20 41 41 H 1.08999 * 109.83879 * 158.40713 * 22 21 20 42 42 H 1.09004 * 109.06732 * 313.80703 * 23 17 16 43 43 H 1.09004 * 109.06489 * 72.80864 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1962 0.0000 4 8 1.4031 2.2094 -0.0005 5 6 3.5662 1.2751 -0.0006 6 7 3.9815 2.6800 0.0002 7 6 4.1751 3.3373 -1.1855 8 1 4.6006 4.3299 -1.1894 9 6 3.8244 2.7278 -2.3823 10 7 2.8889 1.8020 -2.4000 11 14 4.6800 3.2215 -3.9677 12 1 5.6849 4.2763 -3.6801 13 1 5.3581 2.0375 -4.5537 14 1 3.6765 3.7437 -4.9298 15 6 4.1896 3.3817 1.2692 16 6 2.8680 3.9960 1.7350 17 7 3.0769 4.7002 3.0072 18 6 1.8884 5.5048 3.3695 19 6 0.8225 4.7031 4.0771 20 6 1.0469 4.8006 5.6047 21 8 2.1261 4.0542 5.9849 22 6 3.4055 4.3974 5.4342 23 6 3.4974 3.7647 4.0657 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3634 0.5137 0.8901 26 1 -0.3634 0.5137 -0.8900 27 1 3.9556 0.7813 -0.8908 28 1 3.9563 0.7808 0.8893 29 1 2.6442 1.3758 -3.2363 30 1 4.9284 4.1711 1.1309 31 1 4.5470 2.6768 2.0198 32 1 2.1292 3.2067 1.8732 33 1 2.5105 4.7010 0.9844 34 1 1.4621 5.9291 2.4604 35 1 2.2027 6.3209 4.0201 36 1 0.8837 3.6603 3.7654 37 1 -0.1609 5.1011 3.8270 38 1 0.1590 4.4367 6.1217 39 1 1.2177 5.8422 5.8764 40 1 3.4924 5.4805 5.3476 41 1 4.1991 4.0117 6.0741 42 1 2.8566 2.8834 4.0373 43 1 4.5283 3.4610 3.8836 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361313607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:30 Heat of formation + Delta-G solvation = -107.586985 kcal Electronic energy + Delta-G solvation = -24674.670302 eV Core-core repulsion = 21141.881719 eV Total energy + Delta-G solvation = -3532.788583 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.04111 -40.74207 -38.32136 -37.14169 -36.34594 -33.80530 -33.22459 -31.17982 -29.74526 -28.24430 -27.69297 -26.86386 -24.87803 -23.01782 -22.75278 -21.57972 -20.71648 -18.88690 -18.10900 -17.85197 -17.55388 -17.27554 -16.93450 -16.90846 -16.47271 -15.94420 -15.80079 -15.32356 -15.12990 -14.34795 -14.14024 -14.10865 -13.89457 -13.66450 -13.46473 -13.37071 -12.98340 -12.75530 -12.73790 -12.68581 -12.43792 -12.09544 -12.05622 -12.03494 -11.80266 -11.56594 -11.36686 -11.35090 -10.98444 -10.54855 -10.49078 -9.24666 -9.05032 -7.97968 -5.24087 1.47217 1.50683 1.60740 2.00590 2.31889 2.54051 2.80317 2.93394 3.23758 3.63775 3.78494 3.90240 4.02614 4.13373 4.27217 4.32336 4.34966 4.40980 4.43315 4.47140 4.49631 4.57454 4.64438 4.68622 4.75066 4.84701 4.88692 4.90733 4.97469 5.06159 5.10568 5.17803 5.21660 5.34661 5.62702 5.94538 6.05311 6.14516 6.20790 6.61708 7.00947 7.49327 7.78586 8.14170 9.11848 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.018178 B = 0.005337 C = 0.004566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.962496 B = 5244.743414 C = 6130.927426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.388 6.388 3 C 0.466 3.534 4 O -0.538 6.538 5 C 0.186 3.814 6 N -0.580 5.580 7 C -0.254 4.254 8 H 0.080 0.920 9 C -0.050 4.050 10 N -0.929 5.929 11 Si 0.969 3.031 12 H -0.267 1.267 13 H -0.286 1.286 14 H -0.305 1.305 15 C 0.153 3.847 16 C 0.067 3.933 17 N -0.544 5.544 18 C 0.051 3.949 19 C -0.189 4.189 20 C 0.080 3.920 21 O -0.402 6.402 22 C 0.068 3.932 23 C 0.025 3.975 24 H 0.125 0.875 25 H 0.047 0.953 26 H 0.033 0.967 27 H 0.096 0.904 28 H 0.084 0.916 29 H 0.249 0.751 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.008 0.992 33 H 0.034 0.966 34 H 0.052 0.948 35 H 0.089 0.911 36 H 0.039 0.961 37 H 0.083 0.917 38 H 0.103 0.897 39 H 0.057 0.943 40 H 0.073 0.927 41 H 0.126 0.874 42 H 0.023 0.977 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.642 1.653 14.773 14.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.305 6.305 3 C 0.308 3.692 4 O -0.426 6.426 5 C 0.056 3.944 6 N -0.299 5.299 7 C -0.383 4.383 8 H 0.098 0.902 9 C -0.244 4.244 10 N -0.576 5.576 11 Si 0.798 3.202 12 H -0.191 1.191 13 H -0.212 1.212 14 H -0.233 1.233 15 C 0.027 3.973 16 C -0.063 4.063 17 N -0.270 5.270 18 C -0.076 4.076 19 C -0.228 4.228 20 C 0.002 3.998 21 O -0.321 6.321 22 C -0.008 4.008 23 C -0.102 4.102 24 H 0.144 0.856 25 H 0.066 0.934 26 H 0.052 0.948 27 H 0.114 0.886 28 H 0.102 0.898 29 H 0.059 0.941 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.027 0.973 33 H 0.053 0.947 34 H 0.071 0.929 35 H 0.107 0.893 36 H 0.058 0.942 37 H 0.102 0.898 38 H 0.121 0.879 39 H 0.075 0.925 40 H 0.091 0.909 41 H 0.144 0.856 42 H 0.041 0.959 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.514 2.079 14.705 14.860 hybrid contribution -1.352 -0.061 -1.797 2.250 sum -1.866 2.018 12.908 13.197 Atomic orbital electron populations 1.23110 0.77795 1.04030 1.00399 1.86513 1.23001 1.35675 1.85283 1.25762 0.94079 0.80212 0.69192 1.90424 1.67480 1.37517 1.47172 1.20544 0.85068 0.86686 1.02083 1.44481 1.75308 1.07645 1.02492 1.19594 1.33729 1.01004 0.83977 0.90172 1.25417 0.98239 1.00136 1.00616 1.70015 1.29421 1.31993 1.26205 0.85188 0.78039 0.77529 0.79479 1.19135 1.21200 1.23311 1.21053 0.94556 0.95496 0.86184 1.22534 0.98871 0.95540 0.89399 1.62353 1.34560 1.26972 1.03077 1.22051 0.89132 0.96526 0.99940 1.22815 1.00815 1.00280 0.98895 1.21905 0.89592 0.96144 0.92180 1.86415 1.16391 1.59640 1.69633 1.22705 0.84856 1.00618 0.92579 1.22606 1.01599 0.94120 0.91915 0.85643 0.93399 0.94766 0.88600 0.89778 0.94113 0.91813 0.91842 0.97341 0.94690 0.92923 0.89254 0.94169 0.89808 0.87946 0.92502 0.90882 0.85632 0.95866 0.88729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.46 10.55 113.37 1.20 2.66 16 2 O -0.39 -17.07 10.57 -51.53 -0.54 -17.61 16 3 C 0.47 23.07 5.89 71.24 0.42 23.49 16 4 O -0.54 -29.81 13.52 21.98 0.30 -29.51 16 5 C 0.19 8.70 5.58 85.63 0.48 9.17 16 6 N -0.58 -28.05 2.09 -706.35 -1.48 -29.53 16 7 C -0.25 -13.57 9.70 84.03 0.81 -12.76 16 8 H 0.08 4.24 7.92 -2.91 -0.02 4.22 16 9 C -0.05 -2.70 4.89 84.86 0.42 -2.29 16 10 N -0.93 -53.24 9.01 21.65 0.20 -53.05 16 11 Si 0.97 44.61 29.62 68.60 2.03 46.64 16 12 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 13 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 14 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 15 C 0.15 6.16 5.56 86.38 0.48 6.64 16 16 C 0.07 2.72 4.35 86.30 0.38 3.09 16 17 N -0.54 -17.31 4.77 -899.68 -4.29 -21.60 16 18 C 0.05 1.45 5.13 85.43 0.44 1.89 16 19 C -0.19 -4.95 5.67 30.52 0.17 -4.78 16 20 C 0.08 1.67 6.43 72.56 0.47 2.14 16 21 O -0.40 -9.66 9.95 -100.64 -1.00 -10.66 16 22 C 0.07 1.42 6.50 71.35 0.46 1.88 16 23 C 0.03 0.68 4.42 85.57 0.38 1.05 16 24 H 0.13 3.29 8.14 -2.38 -0.02 3.27 16 25 H 0.05 1.65 8.13 -2.38 -0.02 1.63 16 26 H 0.03 1.34 8.13 -2.39 -0.02 1.32 16 27 H 0.10 4.89 6.27 -2.39 -0.01 4.87 16 28 H 0.08 3.29 7.91 -2.38 -0.02 3.27 16 29 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 30 H 0.06 2.53 8.00 -2.39 -0.02 2.51 16 31 H 0.06 2.23 6.54 -2.39 -0.02 2.21 16 32 H 0.01 0.39 5.97 -2.39 -0.01 0.37 16 33 H 0.03 1.67 7.80 -2.38 -0.02 1.65 16 34 H 0.05 1.66 7.65 -2.39 -0.02 1.64 16 35 H 0.09 2.09 6.54 -2.39 -0.02 2.08 16 36 H 0.04 1.32 6.83 -2.38 -0.02 1.30 16 37 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.06 0.99 7.72 -2.39 -0.02 0.97 16 40 H 0.07 1.42 6.78 -2.39 -0.02 1.40 16 41 H 0.13 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.02 0.73 7.05 -2.39 -0.02 0.72 16 43 H 0.09 2.32 7.07 -2.38 -0.02 2.31 16 Total: -1.00 -67.66 332.73 2.30 -65.36 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: 0.99 Total: 17.77 kcal Atomic # 6 Polarization: 26.09 SS G_CDS: 6.10 Total: 32.19 kcal Atomic # 7 Polarization: -98.61 SS G_CDS: -5.57 Total: -104.18 kcal Atomic # 8 Polarization: -56.53 SS G_CDS: -1.25 Total: -57.78 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -67.66 2.30 -65.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361313607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.223 kcal (2) G-P(sol) polarization free energy of solvation -67.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds