Wall clock time and date at job start Tue Mar 31 2020 02:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 114.00237 * 2 1 4 4 C 1.52994 * 109.46964 * 179.97438 * 3 2 1 5 5 C 1.53011 * 109.47195 * 175.07053 * 4 3 2 6 6 H 1.09000 * 109.67451 * 59.90958 * 5 4 3 7 7 C 1.53293 * 109.67874 * 299.35316 * 5 4 3 8 8 O 1.42969 * 109.22071 * 187.96963 * 7 5 4 9 9 C 1.42963 * 114.16181 * 62.58357 * 8 7 5 10 10 C 1.53295 * 109.22275 * 297.41746 * 9 8 7 11 11 N 1.47150 * 109.68169 * 180.42607 * 5 4 3 12 12 C 1.34770 * 120.98424 * 350.23700 * 11 5 4 13 13 O 1.21582 * 120.00055 * 5.65638 * 12 11 5 14 14 N 1.34779 * 120.00239 * 185.65873 * 12 11 5 15 15 C 1.46495 * 120.00330 * 175.02433 * 14 12 11 16 16 C 1.52997 * 109.47259 * 180.02562 * 15 14 12 17 17 C 1.50703 * 109.47143 * 179.97438 * 16 15 14 18 18 H 1.07992 * 120.00147 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99959 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99652 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 119.99936 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47393 * 90.00029 * 21 19 17 23 23 H 1.48498 * 109.47171 * 209.99958 * 21 19 17 24 24 H 1.48501 * 109.46959 * 329.99919 * 21 19 17 25 25 H 1.09004 * 109.47018 * 300.00365 * 1 2 3 26 26 H 1.09002 * 109.46983 * 59.99924 * 1 2 3 27 27 H 1.08993 * 109.47637 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46653 * 60.00225 * 3 2 1 29 29 H 1.08999 * 109.47061 * 300.00170 * 3 2 1 30 30 H 1.09003 * 109.47816 * 295.07167 * 4 3 2 31 31 H 1.09003 * 109.47494 * 55.07657 * 4 3 2 32 32 H 1.08993 * 109.51541 * 307.89695 * 7 5 4 33 33 H 1.09004 * 109.51521 * 68.04741 * 7 5 4 34 34 H 1.08995 * 109.50742 * 177.49525 * 9 8 7 35 35 H 1.08997 * 109.55724 * 57.37068 * 9 8 7 36 36 H 1.09006 * 109.68142 * 292.57941 * 10 9 8 37 37 H 1.09002 * 109.71213 * 172.04845 * 10 9 8 38 38 H 0.96998 * 119.99505 * 355.02301 * 14 12 11 39 39 H 1.09001 * 109.47132 * 299.99707 * 15 14 12 40 40 H 1.08998 * 109.47610 * 59.99799 * 15 14 12 41 41 H 1.09000 * 109.47210 * 299.99897 * 16 15 14 42 42 H 1.09002 * 109.47391 * 60.00029 * 16 15 14 43 43 H 0.97004 * 120.00074 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1845 0.0006 5 6 4.1575 2.5769 -0.1233 6 1 3.8423 3.1958 0.7167 7 6 3.7129 3.2257 -1.4391 8 8 4.4409 4.4406 -1.6344 9 6 5.8534 4.2621 -1.7634 10 6 6.4076 3.6664 -0.4642 11 7 5.6247 2.4651 -0.1334 12 6 6.2335 1.2972 0.1522 13 8 5.5710 0.2920 0.3224 14 7 7.5767 1.2434 0.2493 15 6 8.2319 0.0013 0.6663 16 6 9.7475 0.2088 0.6950 17 6 10.4214 -1.0689 1.1245 18 1 9.8282 -1.9417 1.3537 19 6 11.7956 -1.1238 1.2240 20 7 12.5180 -0.0613 0.9434 21 14 12.6309 -2.7077 1.7557 22 1 12.9328 -3.5339 0.5593 23 1 13.8943 -2.3864 2.4669 24 1 11.7298 -3.4619 2.6636 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.6886 1.8463 0.8900 29 1 1.6886 1.8463 -0.8900 30 1 3.8630 0.7219 0.9317 31 1 3.8515 0.5692 -0.8417 32 1 3.9124 2.5447 -2.2664 33 1 2.6458 3.4437 -1.3953 34 1 6.3262 5.2258 -1.9528 35 1 6.0616 3.5854 -2.5920 36 1 6.3190 4.3957 0.3412 37 1 7.4547 3.3961 -0.6009 38 1 8.1096 2.0273 0.0431 39 1 7.8847 -0.2763 1.6615 40 1 7.9869 -0.7932 -0.0386 41 1 10.0951 0.4866 -0.3000 42 1 9.9922 1.0031 1.4002 43 1 13.4848 -0.0998 1.0137 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000366045145.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:37 Heat of formation + Delta-G solvation = -105.415736 kcal Electronic energy + Delta-G solvation = -23376.438107 eV Core-core repulsion = 19843.743677 eV Total energy + Delta-G solvation = -3532.694431 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.71709 -38.46146 -37.97377 -35.42384 -34.67387 -33.69624 -32.54215 -29.83377 -29.41881 -27.45887 -26.27906 -24.99598 -24.18815 -22.51336 -21.78197 -20.75015 -19.65676 -17.81435 -16.95849 -16.61235 -16.34559 -16.02237 -15.82347 -15.71023 -15.21007 -15.08293 -14.91906 -14.47773 -14.09332 -14.04230 -13.31015 -13.17721 -12.85155 -12.69800 -12.32211 -12.21541 -11.76297 -11.63129 -11.32014 -11.17176 -11.12090 -11.01505 -10.91943 -10.62379 -10.41795 -10.27495 -9.77159 -9.63676 -9.34591 -8.99495 -8.61829 -8.45778 -8.21663 -6.09710 -4.12234 2.66486 3.29841 3.35949 3.40489 3.47261 3.48849 3.70896 4.18672 4.42946 4.51992 4.74812 4.80880 4.89678 4.92517 5.00789 5.05825 5.16478 5.18849 5.24493 5.27593 5.31710 5.38224 5.46507 5.50020 5.52249 5.66268 6.16350 6.24020 6.34770 6.39190 6.66148 6.76398 6.83996 6.98688 7.07398 7.11818 7.54293 7.61935 7.89368 8.22424 8.33552 8.90630 8.95993 9.52613 11.02004 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.018833 B = 0.003462 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.411493 B = 8084.714821 C = 9445.672320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.053 3.947 4 C -0.107 4.107 5 C 0.138 3.862 6 H 0.077 0.923 7 C 0.047 3.953 8 O -0.380 6.380 9 C 0.047 3.953 10 C 0.077 3.923 11 N -0.637 5.637 12 C 0.702 3.298 13 O -0.581 6.581 14 N -0.738 5.738 15 C 0.139 3.861 16 C 0.013 3.987 17 C -0.520 4.520 18 H 0.060 0.940 19 C 0.059 3.941 20 N -0.895 5.895 21 Si 0.897 3.103 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.272 1.272 25 H 0.039 0.961 26 H 0.038 0.962 27 H 0.084 0.916 28 H 0.046 0.954 29 H 0.044 0.956 30 H 0.106 0.894 31 H 0.084 0.916 32 H 0.059 0.941 33 H 0.103 0.897 34 H 0.107 0.893 35 H 0.058 0.942 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.390 0.610 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.021 0.979 42 H 0.021 0.979 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.423 10.408 -4.658 22.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C -0.024 4.024 4 C -0.145 4.145 5 C 0.034 3.966 6 H 0.095 0.905 7 C -0.031 4.031 8 O -0.298 6.298 9 C -0.030 4.030 10 C -0.047 4.047 11 N -0.377 5.377 12 C 0.404 3.596 13 O -0.460 6.460 14 N -0.394 5.394 15 C 0.017 3.983 16 C -0.024 4.024 17 C -0.559 4.559 18 H 0.078 0.922 19 C -0.143 4.143 20 N -0.534 5.534 21 Si 0.725 3.275 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.197 1.197 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.103 0.897 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.125 0.875 31 H 0.103 0.897 32 H 0.077 0.923 33 H 0.121 0.879 34 H 0.125 0.875 35 H 0.076 0.924 36 H 0.095 0.905 37 H 0.110 0.890 38 H 0.226 0.774 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.039 0.961 42 H 0.040 0.960 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -19.657 9.699 -4.513 22.380 hybrid contribution 0.825 -0.309 0.180 0.899 sum -18.832 9.390 -4.333 21.485 Atomic orbital electron populations 1.22733 0.81493 1.02662 0.99676 1.87947 1.19197 1.27889 1.95295 1.22796 0.95521 0.84641 0.99451 1.22016 0.90164 0.94664 1.07632 1.21580 0.79301 0.97753 0.98008 0.90520 1.23212 0.96670 0.86778 0.96417 1.87947 1.18321 1.30309 1.93260 1.22992 0.81802 1.02031 0.96220 1.22323 0.96355 0.87873 0.98110 1.47314 1.05778 1.09318 1.75275 1.16030 0.82656 0.82785 0.78138 1.90938 1.62904 1.33836 1.58274 1.45798 1.04324 1.16933 1.72317 1.21607 0.94954 0.83173 0.98599 1.19318 0.87246 0.98101 0.97736 1.21052 0.91608 0.97228 1.46023 0.92192 1.24996 0.97479 0.96594 0.95232 1.69955 1.05895 1.28651 1.48896 0.86504 0.78877 0.83328 0.78811 1.20557 1.21192 1.19690 0.94245 0.94309 0.89721 0.93604 0.93834 0.87546 0.89694 0.92293 0.87873 0.87526 0.92414 0.90509 0.88970 0.77425 0.92779 0.92635 0.96056 0.96039 0.92862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.38 -4.99 10.70 -35.23 -0.38 -5.36 16 3 C 0.05 0.58 5.74 37.15 0.21 0.79 16 4 C -0.11 -1.46 3.54 -26.73 -0.09 -1.55 16 5 C 0.14 1.63 3.20 -67.42 -0.22 1.42 16 6 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 7 C 0.05 0.47 5.71 37.31 0.21 0.68 16 8 O -0.38 -4.08 10.74 -35.23 -0.38 -4.45 16 9 C 0.05 0.44 6.98 37.31 0.26 0.70 16 10 C 0.08 0.80 6.57 -3.53 -0.02 0.78 16 11 N -0.64 -8.62 3.02 -170.43 -0.51 -9.14 16 12 C 0.70 12.27 8.23 -86.92 -0.72 11.56 16 13 O -0.58 -11.88 11.90 5.29 0.06 -11.81 16 14 N -0.74 -13.13 5.46 -65.23 -0.36 -13.49 16 15 C 0.14 2.99 5.62 -4.05 -0.02 2.97 16 16 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 17 C -0.52 -14.45 9.11 -34.44 -0.31 -14.76 16 18 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 19 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 20 N -0.90 -26.08 13.29 55.43 0.74 -25.35 16 21 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 25 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.04 0.39 6.40 -51.93 -0.33 0.05 16 30 H 0.11 1.78 6.30 -51.93 -0.33 1.46 16 31 H 0.08 1.36 7.24 -51.93 -0.38 0.99 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.10 0.81 6.81 -51.93 -0.35 0.46 16 34 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.09 0.91 5.79 -51.93 -0.30 0.61 16 38 H 0.39 6.05 6.04 -40.82 -0.25 5.80 16 39 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 40 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 41 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 342.69 15.07 5.16 5.16 Total: -1.00 -32.74 342.69 -7.48 -40.22 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -6.97 Total: 2.12 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: 0.17 Total: 5.71 kcal Atomic # 7 Polarization: -47.84 SS G_CDS: -0.13 Total: -47.97 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: -0.69 Total: -21.63 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.74 -7.48 -40.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366045145.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.194 kcal (2) G-P(sol) polarization free energy of solvation -32.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds