Wall clock time and date at job start Tue Mar 31 2020 02:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 114.00237 * 2 1 4 4 C 1.52994 * 109.46964 * 179.97438 * 3 2 1 5 5 C 1.53011 * 109.47195 * 175.07053 * 4 3 2 6 6 H 1.09000 * 109.67451 * 59.90958 * 5 4 3 7 7 C 1.53293 * 109.67874 * 299.35316 * 5 4 3 8 8 O 1.42969 * 109.22071 * 187.96963 * 7 5 4 9 9 C 1.42963 * 114.16181 * 62.58357 * 8 7 5 10 10 C 1.53295 * 109.22275 * 297.41746 * 9 8 7 11 11 N 1.47150 * 109.68169 * 180.42607 * 5 4 3 12 12 C 1.34770 * 120.98424 * 350.23700 * 11 5 4 13 13 O 1.21582 * 120.00055 * 5.65638 * 12 11 5 14 14 N 1.34779 * 120.00239 * 185.65873 * 12 11 5 15 15 C 1.46495 * 120.00330 * 175.02433 * 14 12 11 16 16 C 1.52997 * 109.47259 * 180.02562 * 15 14 12 17 17 C 1.50703 * 109.47143 * 179.97438 * 16 15 14 18 18 H 1.07992 * 120.00147 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99959 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99652 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 119.99936 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47393 * 90.00029 * 21 19 17 23 23 H 1.48498 * 109.47171 * 209.99958 * 21 19 17 24 24 H 1.48501 * 109.46959 * 329.99919 * 21 19 17 25 25 H 1.09004 * 109.47018 * 300.00365 * 1 2 3 26 26 H 1.09002 * 109.46983 * 59.99924 * 1 2 3 27 27 H 1.08993 * 109.47637 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46653 * 60.00225 * 3 2 1 29 29 H 1.08999 * 109.47061 * 300.00170 * 3 2 1 30 30 H 1.09003 * 109.47816 * 295.07167 * 4 3 2 31 31 H 1.09003 * 109.47494 * 55.07657 * 4 3 2 32 32 H 1.08993 * 109.51541 * 307.89695 * 7 5 4 33 33 H 1.09004 * 109.51521 * 68.04741 * 7 5 4 34 34 H 1.08995 * 109.50742 * 177.49525 * 9 8 7 35 35 H 1.08997 * 109.55724 * 57.37068 * 9 8 7 36 36 H 1.09006 * 109.68142 * 292.57941 * 10 9 8 37 37 H 1.09002 * 109.71213 * 172.04845 * 10 9 8 38 38 H 0.96998 * 119.99505 * 355.02301 * 14 12 11 39 39 H 1.09001 * 109.47132 * 299.99707 * 15 14 12 40 40 H 1.08998 * 109.47610 * 59.99799 * 15 14 12 41 41 H 1.09000 * 109.47210 * 299.99897 * 16 15 14 42 42 H 1.09002 * 109.47391 * 60.00029 * 16 15 14 43 43 H 0.97004 * 120.00074 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1845 0.0006 5 6 4.1575 2.5769 -0.1233 6 1 3.8423 3.1958 0.7167 7 6 3.7129 3.2257 -1.4391 8 8 4.4409 4.4406 -1.6344 9 6 5.8534 4.2621 -1.7634 10 6 6.4076 3.6664 -0.4642 11 7 5.6247 2.4651 -0.1334 12 6 6.2335 1.2972 0.1522 13 8 5.5710 0.2920 0.3224 14 7 7.5767 1.2434 0.2493 15 6 8.2319 0.0013 0.6663 16 6 9.7475 0.2088 0.6950 17 6 10.4214 -1.0689 1.1245 18 1 9.8282 -1.9417 1.3537 19 6 11.7956 -1.1238 1.2240 20 7 12.5180 -0.0613 0.9434 21 14 12.6309 -2.7077 1.7557 22 1 12.9328 -3.5339 0.5593 23 1 13.8943 -2.3864 2.4669 24 1 11.7298 -3.4619 2.6636 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.6886 1.8463 0.8900 29 1 1.6886 1.8463 -0.8900 30 1 3.8630 0.7219 0.9317 31 1 3.8515 0.5692 -0.8417 32 1 3.9124 2.5447 -2.2664 33 1 2.6458 3.4437 -1.3953 34 1 6.3262 5.2258 -1.9528 35 1 6.0616 3.5854 -2.5920 36 1 6.3190 4.3957 0.3412 37 1 7.4547 3.3961 -0.6009 38 1 8.1096 2.0273 0.0431 39 1 7.8847 -0.2763 1.6615 40 1 7.9869 -0.7932 -0.0386 41 1 10.0951 0.4866 -0.3000 42 1 9.9922 1.0031 1.4002 43 1 13.4848 -0.0998 1.0137 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000366045145.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:36 Heat of formation + Delta-G solvation = -129.314647 kcal Electronic energy + Delta-G solvation = -23377.474442 eV Core-core repulsion = 19843.743677 eV Total energy + Delta-G solvation = -3533.730765 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.87254 -39.57875 -38.83428 -36.89964 -35.86136 -35.22650 -34.13770 -31.39908 -30.53674 -28.46026 -27.07605 -26.68403 -25.28380 -23.54713 -23.19893 -22.23924 -20.93911 -19.00749 -18.46796 -17.86538 -17.53255 -17.03591 -16.91357 -16.65394 -16.49072 -16.18193 -16.06514 -15.88306 -15.44615 -15.29172 -14.66257 -14.37573 -14.28886 -14.01860 -13.45754 -13.23760 -13.18816 -12.95201 -12.61955 -12.52740 -12.39257 -12.28605 -12.16678 -12.02711 -11.82956 -11.61239 -11.41993 -11.25044 -10.61551 -10.59524 -10.35451 -10.02375 -9.44496 -8.24619 -6.34758 1.41334 1.42248 1.49262 1.55008 2.09489 2.40008 2.66960 2.85433 3.04735 3.10286 3.62710 3.88139 3.97506 3.99630 4.10284 4.22112 4.24762 4.31245 4.43360 4.46939 4.50999 4.53913 4.55775 4.60448 4.66473 4.80264 4.85390 4.85518 4.85699 5.16368 5.21481 5.28529 5.51185 5.58095 5.60933 5.77078 5.85409 6.05228 6.16656 6.30404 6.78090 6.93975 7.34528 7.54896 8.87337 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.018833 B = 0.003462 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.411493 B = 8084.714821 C = 9445.672320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.424 6.424 3 C 0.057 3.943 4 C -0.096 4.096 5 C 0.136 3.864 6 H 0.094 0.906 7 C 0.053 3.947 8 O -0.385 6.385 9 C 0.049 3.951 10 C 0.071 3.929 11 N -0.633 5.633 12 C 0.698 3.302 13 O -0.616 6.616 14 N -0.735 5.735 15 C 0.162 3.838 16 C 0.026 3.974 17 C -0.547 4.547 18 H 0.058 0.942 19 C 0.008 3.992 20 N -0.926 5.926 21 Si 0.965 3.035 22 H -0.272 1.272 23 H -0.279 1.279 24 H -0.267 1.267 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.090 0.910 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.132 0.868 34 H 0.136 0.864 35 H 0.053 0.947 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.402 0.598 39 H 0.043 0.957 40 H 0.042 0.958 41 H 0.008 0.992 42 H 0.009 0.991 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.440 11.643 -4.930 24.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.343 6.343 3 C -0.020 4.020 4 C -0.134 4.134 5 C 0.032 3.968 6 H 0.111 0.889 7 C -0.024 4.024 8 O -0.303 6.303 9 C -0.029 4.029 10 C -0.051 4.051 11 N -0.371 5.371 12 C 0.400 3.600 13 O -0.497 6.497 14 N -0.392 5.392 15 C 0.037 3.963 16 C -0.012 4.012 17 C -0.585 4.585 18 H 0.076 0.924 19 C -0.191 4.191 20 N -0.566 5.566 21 Si 0.789 3.211 22 H -0.198 1.198 23 H -0.204 1.204 24 H -0.191 1.191 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.108 0.892 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.149 0.851 34 H 0.154 0.846 35 H 0.071 0.929 36 H 0.111 0.889 37 H 0.113 0.887 38 H 0.240 0.760 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.026 0.974 42 H 0.027 0.973 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -20.700 10.994 -4.804 23.926 hybrid contribution 1.091 -0.649 0.254 1.295 sum -19.609 10.345 -4.549 22.632 Atomic orbital electron populations 1.22934 0.79384 1.03639 1.01132 1.87896 1.21646 1.29178 1.95620 1.22782 0.93228 0.84462 1.01494 1.21717 0.92618 0.94972 1.04106 1.21783 0.78012 0.96995 1.00013 0.88861 1.23225 0.98119 0.86417 0.94642 1.87951 1.18913 1.30346 1.93083 1.23116 0.81339 1.03373 0.95034 1.22607 0.96245 0.86754 0.99537 1.47386 1.06890 1.08899 1.73974 1.16172 0.82174 0.83623 0.78055 1.90945 1.63505 1.35627 1.59634 1.45499 1.04845 1.16160 1.72698 1.21057 0.93095 0.84423 0.97690 1.19107 0.89079 0.96692 0.96283 1.21458 0.92385 0.98240 1.46451 0.92392 1.25855 0.98118 1.00019 0.95075 1.70052 1.06345 1.30605 1.49549 0.85449 0.77825 0.79181 0.78626 1.19778 1.20425 1.19124 0.92944 0.92583 0.89169 0.91869 0.91177 0.91385 0.92924 0.93106 0.85053 0.84594 0.92914 0.88852 0.88683 0.76036 0.93908 0.93967 0.97381 0.97312 0.92509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 11.01 113.37 1.25 1.65 16 2 O -0.42 -10.81 10.70 -148.98 -1.59 -12.40 16 3 C 0.06 1.17 5.74 71.98 0.41 1.59 16 4 C -0.10 -2.65 3.54 30.60 0.11 -2.54 16 5 C 0.14 3.04 3.20 44.97 0.14 3.19 16 6 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 7 C 0.05 0.95 5.71 72.08 0.41 1.36 16 8 O -0.38 -7.10 10.74 -148.98 -1.60 -8.70 16 9 C 0.05 0.77 6.98 72.08 0.50 1.28 16 10 C 0.07 1.35 6.57 86.35 0.57 1.91 16 11 N -0.63 -16.74 3.02 -811.38 -2.45 -19.19 16 12 C 0.70 24.90 8.23 179.06 1.47 26.38 16 13 O -0.62 -26.36 11.90 -3.97 -0.05 -26.40 16 14 N -0.74 -26.65 5.46 -478.56 -2.62 -29.26 16 15 C 0.16 7.16 5.62 86.38 0.49 7.65 16 16 C 0.03 1.32 5.09 29.85 0.15 1.47 16 17 C -0.55 -30.85 9.11 25.60 0.23 -30.61 16 18 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 19 C 0.01 0.46 5.46 84.66 0.46 0.92 16 20 N -0.93 -54.25 13.29 21.45 0.28 -53.97 16 21 Si 0.96 43.86 29.54 68.60 2.03 45.88 16 22 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 23 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 24 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 25 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 26 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.07 1.06 6.40 -2.39 -0.02 1.04 16 30 H 0.07 2.40 6.30 -2.39 -0.02 2.39 16 31 H 0.05 1.77 7.24 -2.39 -0.02 1.75 16 32 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.13 1.58 6.81 -2.38 -0.02 1.57 16 34 H 0.14 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 37 H 0.10 1.74 5.79 -2.39 -0.01 1.73 16 38 H 0.40 12.50 6.04 -92.71 -0.56 11.94 16 39 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 42 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 43 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -72.03 342.69 0.64 -71.39 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: 0.44 Total: 18.42 kcal Atomic # 6 Polarization: 8.03 SS G_CDS: 6.20 Total: 14.23 kcal Atomic # 7 Polarization: -97.64 SS G_CDS: -4.78 Total: -102.42 kcal Atomic # 8 Polarization: -44.26 SS G_CDS: -3.24 Total: -47.50 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.88 kcal Total: -72.03 0.64 -71.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366045145.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.924 kcal (2) G-P(sol) polarization free energy of solvation -72.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds