Wall clock time and date at job start Tue Mar 31 2020 02:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42893 * 114.00323 * 2 1 4 4 C 1.53002 * 109.47065 * 179.97438 * 3 2 1 5 5 H 1.09006 * 109.47197 * 174.99932 * 4 3 2 6 6 N 1.46494 * 109.47601 * 294.99938 * 4 3 2 7 7 C 1.34774 * 120.00531 * 209.29527 * 6 4 3 8 8 O 1.21586 * 119.99737 * 5.37562 * 7 6 4 9 9 N 1.34780 * 120.00089 * 185.37938 * 7 6 4 10 10 C 1.46495 * 119.99594 * 179.97438 * 9 7 6 11 11 C 1.53008 * 109.46940 * 179.97438 * 10 9 7 12 12 C 1.50699 * 109.47156 * 179.97438 * 11 10 9 13 13 H 1.08001 * 120.00341 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99962 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00088 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00041 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47134 * 90.00587 * 16 14 12 18 18 H 1.48507 * 109.47093 * 210.00492 * 16 14 12 19 19 H 1.48503 * 109.47129 * 330.00154 * 16 14 12 20 20 C 1.53000 * 109.46999 * 55.00199 * 4 3 2 21 21 H 1.08997 * 110.33047 * 298.88240 * 20 4 3 22 22 C 1.54485 * 110.37379 * 61.13500 * 20 4 3 23 23 C 1.54504 * 104.06183 * 142.80810 * 22 20 4 24 24 C 1.54482 * 104.06558 * 0.02562 * 23 22 20 25 25 O 1.44423 * 104.80375 * 336.02204 * 24 23 22 26 26 H 1.08994 * 109.47903 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47395 * 300.00621 * 1 2 3 28 28 H 1.09005 * 109.46973 * 60.00108 * 1 2 3 29 29 H 1.09002 * 109.47237 * 60.00207 * 3 2 1 30 30 H 1.09001 * 109.47494 * 299.99827 * 3 2 1 31 31 H 0.97003 * 120.00039 * 29.28914 * 6 4 3 32 32 H 0.96990 * 120.00027 * 359.97438 * 9 7 6 33 33 H 1.09006 * 109.47367 * 299.99473 * 10 9 7 34 34 H 1.08998 * 109.47714 * 59.99818 * 10 9 7 35 35 H 1.08993 * 109.47119 * 299.99892 * 11 10 9 36 36 H 1.09002 * 109.46755 * 60.00302 * 11 10 9 37 37 H 0.96996 * 120.00095 * 179.97438 * 15 14 12 38 38 H 1.08994 * 110.50805 * 24.16495 * 22 20 4 39 39 H 1.08999 * 110.62843 * 261.51375 * 22 20 4 40 40 H 1.08999 * 110.51496 * 241.35795 * 23 22 20 41 41 H 1.09002 * 110.62601 * 118.70108 * 23 22 20 42 42 H 1.09009 * 110.37188 * 94.85055 * 24 23 22 43 43 H 1.08995 * 110.37081 * 217.18610 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1844 0.0006 5 1 3.9786 2.1763 -0.0889 6 7 3.9757 0.5642 1.2527 7 6 5.1871 0.8620 1.7628 8 8 5.8741 1.7171 1.2382 9 7 5.6371 0.2118 2.8542 10 6 6.9541 0.5351 3.4083 11 6 7.2198 -0.3393 4.6355 12 6 8.5749 -0.0071 5.2051 13 1 9.1854 0.7519 4.7388 14 6 9.0348 -0.6716 6.3222 15 7 8.2911 -1.5956 6.8904 16 14 10.7142 -0.2594 7.0287 17 1 10.5755 0.8233 8.0354 18 1 11.2888 -1.4663 7.6757 19 1 11.6134 0.1922 5.9366 20 6 3.9789 0.3192 -1.1807 21 1 3.5591 -0.6830 -1.0946 22 6 3.5496 0.9694 -2.5147 23 6 4.7237 0.6697 -3.4733 24 6 5.7232 -0.1267 -2.6053 25 8 5.4201 0.2580 -1.2466 26 1 -0.3635 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.6886 1.8463 0.8900 30 1 1.6887 1.8463 -0.8900 31 1 3.3953 -0.0607 1.7147 32 1 5.0889 -0.4702 3.2728 33 1 7.7206 0.3485 2.6560 34 1 6.9783 1.5854 3.6988 35 1 6.4534 -0.1523 5.3876 36 1 7.1956 -1.3897 4.3453 37 1 8.6148 -2.0633 7.6761 38 1 3.4220 2.0448 -2.3916 39 1 2.6297 0.5164 -2.8841 40 1 5.1765 1.5970 -3.8242 41 1 4.3865 0.0673 -4.3168 42 1 5.5722 -1.1979 -2.7391 43 1 6.7474 0.1475 -2.8579 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000434389350.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:29 Heat of formation + Delta-G solvation = -130.919642 kcal Electronic energy + Delta-G solvation = -23275.590246 eV Core-core repulsion = 19741.789884 eV Total energy + Delta-G solvation = -3533.800363 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.12547 -38.85086 -38.07053 -35.09876 -34.25727 -32.74931 -32.18419 -30.84229 -29.05153 -28.03185 -26.29776 -24.65152 -23.58407 -21.93282 -21.00472 -20.50913 -20.31521 -18.00504 -16.93001 -16.78003 -16.25330 -16.19900 -15.81601 -15.51191 -15.10801 -14.68652 -14.55234 -14.43500 -13.89146 -13.59343 -13.37829 -13.18356 -12.67752 -12.31426 -12.21805 -11.97157 -11.78126 -11.59550 -11.47185 -11.18897 -11.08703 -10.96389 -10.76163 -10.55935 -10.20208 -10.06767 -9.73700 -9.64361 -9.42996 -9.16086 -8.79985 -8.39946 -8.08391 -6.02001 -4.04035 3.12461 3.34648 3.40328 3.43166 3.46121 3.75201 3.91858 4.45963 4.47714 4.60764 4.68784 4.79864 4.83437 4.96573 5.02845 5.06312 5.08282 5.20038 5.26314 5.34423 5.34987 5.45509 5.50143 5.58104 5.69558 5.75851 5.89344 6.00243 6.44289 6.54011 6.69512 6.81124 6.90826 6.97119 7.19944 7.42806 7.68595 7.74398 7.98410 8.36057 8.64151 9.01742 9.24052 9.60180 11.09789 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.021761 B = 0.003259 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.385160 B = 8589.812667 C = 9459.632532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.386 6.386 3 C 0.054 3.946 4 C 0.176 3.824 5 H 0.109 0.891 6 N -0.744 5.744 7 C 0.703 3.297 8 O -0.587 6.587 9 N -0.741 5.741 10 C 0.143 3.857 11 C 0.013 3.987 12 C -0.518 4.518 13 H 0.059 0.941 14 C 0.058 3.942 15 N -0.895 5.895 16 Si 0.896 3.104 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.272 1.272 20 C 0.065 3.935 21 H 0.076 0.924 22 C -0.147 4.147 23 C -0.154 4.154 24 C 0.042 3.958 25 O -0.346 6.346 26 H 0.086 0.914 27 H 0.042 0.958 28 H 0.040 0.960 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.397 0.603 32 H 0.391 0.609 33 H 0.053 0.947 34 H 0.051 0.949 35 H 0.021 0.979 36 H 0.022 0.978 37 H 0.261 0.739 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.054 0.946 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.670 2.974 -19.097 26.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.305 6.305 3 C -0.023 4.023 4 C 0.070 3.930 5 H 0.127 0.873 6 N -0.401 5.401 7 C 0.403 3.597 8 O -0.464 6.464 9 N -0.394 5.394 10 C 0.020 3.980 11 C -0.025 4.025 12 C -0.557 4.557 13 H 0.078 0.922 14 C -0.144 4.144 15 N -0.535 5.535 16 Si 0.724 3.276 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.197 1.197 20 C 0.005 3.995 21 H 0.094 0.906 22 C -0.185 4.185 23 C -0.191 4.191 24 C -0.035 4.035 25 O -0.264 6.264 26 H 0.105 0.895 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.230 0.770 32 H 0.224 0.776 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.039 0.961 36 H 0.040 0.960 37 H 0.071 0.929 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.073 0.927 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -16.708 3.527 -19.241 25.726 hybrid contribution -0.046 -0.378 0.636 0.741 sum -16.754 3.149 -18.605 25.234 Atomic orbital electron populations 1.22754 0.80858 1.02906 1.00015 1.87906 1.19800 1.27392 1.95423 1.22890 0.92415 0.85486 1.01521 1.20826 0.90966 0.98275 0.82967 0.87305 1.44976 1.18360 1.50900 1.25828 1.15979 0.81150 0.81916 0.80630 1.90876 1.57258 1.35544 1.62759 1.45486 1.21635 1.42240 1.30052 1.21529 0.80366 0.99714 0.96429 1.19322 0.97353 0.94859 0.90934 1.21077 1.01779 1.21110 1.11736 0.92238 1.24996 0.97637 0.94972 0.96757 1.69962 1.37322 1.24677 1.21499 0.86519 0.84058 0.77768 0.79241 1.20618 1.21236 1.19715 1.23385 0.82758 0.99301 0.94045 0.90603 1.22953 0.98694 1.01737 0.95135 1.22923 0.96400 1.01198 0.98617 1.23376 0.99603 0.97929 0.82624 1.89386 1.19949 1.89721 1.27385 0.89518 0.93913 0.94117 0.91845 0.91646 0.76959 0.77623 0.92872 0.93020 0.96062 0.95999 0.92945 0.90764 0.90613 0.90760 0.90877 0.92736 0.89287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.39 -3.46 9.59 -35.23 -0.34 -3.80 16 3 C 0.05 0.47 5.39 37.16 0.20 0.67 16 4 C 0.18 2.16 2.23 -67.93 -0.15 2.01 16 5 H 0.11 1.53 7.37 -51.93 -0.38 1.14 16 6 N -0.74 -10.68 5.02 -58.68 -0.29 -10.97 16 7 C 0.70 13.42 8.09 -86.92 -0.70 12.71 16 8 O -0.59 -13.42 15.40 4.34 0.07 -13.35 16 9 N -0.74 -14.30 5.56 -65.22 -0.36 -14.67 16 10 C 0.14 3.27 5.61 -4.04 -0.02 3.25 16 11 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 12 C -0.52 -14.86 9.11 -34.44 -0.31 -15.18 16 13 H 0.06 1.68 7.74 -52.49 -0.41 1.27 16 14 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 15 N -0.90 -26.77 13.29 55.43 0.74 -26.04 16 16 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 20 C 0.06 0.79 2.80 -25.95 -0.07 0.72 16 21 H 0.08 0.95 7.64 -51.93 -0.40 0.55 16 22 C -0.15 -1.33 5.65 -25.16 -0.14 -1.47 16 23 C -0.15 -1.38 7.09 -25.16 -0.18 -1.56 16 24 C 0.04 0.49 7.63 37.94 0.29 0.78 16 25 O -0.35 -5.51 10.33 -36.18 -0.37 -5.89 16 26 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.43 7.36 -51.93 -0.38 0.05 16 31 H 0.40 4.87 8.42 -40.82 -0.34 4.53 16 32 H 0.39 6.61 8.49 -40.82 -0.35 6.26 16 33 H 0.05 1.29 8.14 -51.93 -0.42 0.86 16 34 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.07 0.63 7.71 -51.93 -0.40 0.22 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 43 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 354.11 15.07 5.34 5.34 Total: -1.00 -34.82 354.11 -7.76 -42.58 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -7.29 Total: 4.93 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: -0.22 Total: 4.99 kcal Atomic # 7 Polarization: -51.76 SS G_CDS: 0.08 Total: -51.68 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: -0.64 Total: -23.04 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.82 -7.76 -42.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000434389350.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.336 kcal (2) G-P(sol) polarization free energy of solvation -34.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds