Wall clock time and date at job start Tue Mar 31 2020 02:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42893 * 114.00323 * 2 1 4 4 C 1.53002 * 109.47065 * 179.97438 * 3 2 1 5 5 H 1.09006 * 109.47197 * 174.99932 * 4 3 2 6 6 N 1.46494 * 109.47601 * 294.99938 * 4 3 2 7 7 C 1.34774 * 120.00531 * 209.29527 * 6 4 3 8 8 O 1.21586 * 119.99737 * 5.37562 * 7 6 4 9 9 N 1.34780 * 120.00089 * 185.37938 * 7 6 4 10 10 C 1.46495 * 119.99594 * 179.97438 * 9 7 6 11 11 C 1.53008 * 109.46940 * 179.97438 * 10 9 7 12 12 C 1.50699 * 109.47156 * 179.97438 * 11 10 9 13 13 H 1.08001 * 120.00341 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99962 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00088 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00041 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47134 * 90.00587 * 16 14 12 18 18 H 1.48507 * 109.47093 * 210.00492 * 16 14 12 19 19 H 1.48503 * 109.47129 * 330.00154 * 16 14 12 20 20 C 1.53000 * 109.46999 * 55.00199 * 4 3 2 21 21 H 1.08997 * 110.33047 * 298.88240 * 20 4 3 22 22 C 1.54485 * 110.37379 * 61.13500 * 20 4 3 23 23 C 1.54504 * 104.06183 * 142.80810 * 22 20 4 24 24 C 1.54482 * 104.06558 * 0.02562 * 23 22 20 25 25 O 1.44423 * 104.80375 * 336.02204 * 24 23 22 26 26 H 1.08994 * 109.47903 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47395 * 300.00621 * 1 2 3 28 28 H 1.09005 * 109.46973 * 60.00108 * 1 2 3 29 29 H 1.09002 * 109.47237 * 60.00207 * 3 2 1 30 30 H 1.09001 * 109.47494 * 299.99827 * 3 2 1 31 31 H 0.97003 * 120.00039 * 29.28914 * 6 4 3 32 32 H 0.96990 * 120.00027 * 359.97438 * 9 7 6 33 33 H 1.09006 * 109.47367 * 299.99473 * 10 9 7 34 34 H 1.08998 * 109.47714 * 59.99818 * 10 9 7 35 35 H 1.08993 * 109.47119 * 299.99892 * 11 10 9 36 36 H 1.09002 * 109.46755 * 60.00302 * 11 10 9 37 37 H 0.96996 * 120.00095 * 179.97438 * 15 14 12 38 38 H 1.08994 * 110.50805 * 24.16495 * 22 20 4 39 39 H 1.08999 * 110.62843 * 261.51375 * 22 20 4 40 40 H 1.08999 * 110.51496 * 241.35795 * 23 22 20 41 41 H 1.09002 * 110.62601 * 118.70108 * 23 22 20 42 42 H 1.09009 * 110.37188 * 94.85055 * 24 23 22 43 43 H 1.08995 * 110.37081 * 217.18610 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1844 0.0006 5 1 3.9786 2.1763 -0.0889 6 7 3.9757 0.5642 1.2527 7 6 5.1871 0.8620 1.7628 8 8 5.8741 1.7171 1.2382 9 7 5.6371 0.2118 2.8542 10 6 6.9541 0.5351 3.4083 11 6 7.2198 -0.3393 4.6355 12 6 8.5749 -0.0071 5.2051 13 1 9.1854 0.7519 4.7388 14 6 9.0348 -0.6716 6.3222 15 7 8.2911 -1.5956 6.8904 16 14 10.7142 -0.2594 7.0287 17 1 10.5755 0.8233 8.0354 18 1 11.2888 -1.4663 7.6757 19 1 11.6134 0.1922 5.9366 20 6 3.9789 0.3192 -1.1807 21 1 3.5591 -0.6830 -1.0946 22 6 3.5496 0.9694 -2.5147 23 6 4.7237 0.6697 -3.4733 24 6 5.7232 -0.1267 -2.6053 25 8 5.4201 0.2580 -1.2466 26 1 -0.3635 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.6886 1.8463 0.8900 30 1 1.6887 1.8463 -0.8900 31 1 3.3953 -0.0607 1.7147 32 1 5.0889 -0.4702 3.2728 33 1 7.7206 0.3485 2.6560 34 1 6.9783 1.5854 3.6988 35 1 6.4534 -0.1523 5.3876 36 1 7.1956 -1.3897 4.3453 37 1 8.6148 -2.0633 7.6761 38 1 3.4220 2.0448 -2.3916 39 1 2.6297 0.5164 -2.8841 40 1 5.1765 1.5970 -3.8242 41 1 4.3865 0.0673 -4.3168 42 1 5.5722 -1.1979 -2.7391 43 1 6.7474 0.1475 -2.8579 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000434389350.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:28 Heat of formation + Delta-G solvation = -157.783830 kcal Electronic energy + Delta-G solvation = -23276.755165 eV Core-core repulsion = 19741.789884 eV Total energy + Delta-G solvation = -3534.965282 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 286.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.28171 -40.11777 -38.79232 -36.68396 -35.69337 -34.77900 -33.12675 -32.15572 -30.75098 -28.75604 -27.05022 -26.47748 -24.52525 -23.16552 -22.57030 -21.91597 -21.35432 -19.48040 -18.43839 -17.82110 -17.64214 -17.01448 -16.78377 -16.49582 -16.35174 -16.31162 -15.98891 -15.66977 -15.07221 -14.89377 -14.76743 -14.48274 -14.25959 -13.53250 -13.20252 -13.06390 -12.92050 -12.77641 -12.53979 -12.51610 -12.37445 -12.23351 -12.14700 -12.04032 -11.63568 -11.49544 -11.46095 -11.11646 -10.73342 -10.59214 -10.55685 -10.19859 -9.67340 -8.22942 -6.33411 1.41972 1.43223 1.54724 1.79639 2.30099 2.42421 2.78061 2.98847 3.11479 3.42573 3.67093 3.82369 3.96076 4.08069 4.17078 4.28463 4.44674 4.45262 4.49877 4.54129 4.55594 4.63689 4.65014 4.72367 4.85699 4.87824 4.91892 4.94797 4.97498 5.11269 5.20026 5.35031 5.55902 5.59300 5.60670 5.80675 6.01540 6.13104 6.18726 6.20660 6.79491 7.20460 7.35837 7.72473 8.89195 Molecular weight = 286.17amu Principal moments of inertia in cm(-1) A = 0.021761 B = 0.003259 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.385160 B = 8589.812667 C = 9459.632532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.405 6.405 3 C 0.065 3.935 4 C 0.170 3.830 5 H 0.089 0.911 6 N -0.727 5.727 7 C 0.702 3.298 8 O -0.626 6.626 9 N -0.737 5.737 10 C 0.164 3.836 11 C 0.025 3.975 12 C -0.547 4.547 13 H 0.058 0.942 14 C 0.007 3.993 15 N -0.927 5.927 16 Si 0.967 3.033 17 H -0.271 1.271 18 H -0.279 1.279 19 H -0.267 1.267 20 C 0.061 3.939 21 H 0.072 0.928 22 C -0.139 4.139 23 C -0.147 4.147 24 C 0.031 3.969 25 O -0.394 6.394 26 H 0.093 0.907 27 H 0.047 0.953 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.408 0.592 32 H 0.404 0.596 33 H 0.037 0.963 34 H 0.043 0.957 35 H 0.009 0.991 36 H 0.006 0.994 37 H 0.266 0.734 38 H 0.081 0.919 39 H 0.099 0.901 40 H 0.076 0.924 41 H 0.097 0.903 42 H 0.061 0.939 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.920 3.232 -20.095 27.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.324 6.324 3 C -0.013 4.013 4 C 0.064 3.936 5 H 0.107 0.893 6 N -0.383 5.383 7 C 0.402 3.598 8 O -0.507 6.507 9 N -0.392 5.392 10 C 0.040 3.960 11 C -0.012 4.012 12 C -0.585 4.585 13 H 0.076 0.924 14 C -0.192 4.192 15 N -0.567 5.567 16 Si 0.791 3.209 17 H -0.196 1.196 18 H -0.204 1.204 19 H -0.191 1.191 20 C 0.002 3.998 21 H 0.090 0.910 22 C -0.177 4.177 23 C -0.184 4.184 24 C -0.046 4.046 25 O -0.314 6.314 26 H 0.112 0.888 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.111 0.889 31 H 0.244 0.756 32 H 0.238 0.762 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.028 0.972 36 H 0.024 0.976 37 H 0.075 0.925 38 H 0.100 0.900 39 H 0.118 0.882 40 H 0.095 0.905 41 H 0.115 0.885 42 H 0.079 0.921 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -18.029 3.763 -20.260 27.380 hybrid contribution 0.276 -0.506 0.914 1.080 sum -17.753 3.257 -19.346 26.459 Atomic orbital electron populations 1.22921 0.79207 1.03770 1.01062 1.87874 1.21536 1.27367 1.95642 1.22782 0.89494 0.85849 1.03131 1.21072 0.93582 0.97059 0.81859 0.89289 1.44870 1.16618 1.50480 1.26344 1.16100 0.82144 0.81381 0.80155 1.90845 1.58782 1.37277 1.63794 1.45214 1.20657 1.42837 1.30509 1.21009 0.81822 0.98413 0.94793 1.19116 0.96238 0.94287 0.91577 1.21466 1.03004 1.21536 1.12509 0.92367 1.25890 1.01737 0.94623 0.96962 1.70065 1.39212 1.25417 1.21964 0.85419 0.79006 0.77899 0.78561 1.19606 1.20407 1.19127 1.23489 0.81331 0.99347 0.95633 0.91013 1.22949 0.99554 1.02115 0.93123 1.22911 0.95526 1.01258 0.98742 1.23571 1.00365 0.98839 0.81790 1.89341 1.22203 1.90116 1.29733 0.88837 0.93406 0.92512 0.91297 0.88926 0.75584 0.76168 0.94472 0.93883 0.97245 0.97587 0.92527 0.90029 0.88201 0.90512 0.88461 0.92084 0.89787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 113.37 1.25 1.49 16 2 O -0.40 -6.29 9.59 -148.98 -1.43 -7.72 16 3 C 0.06 0.97 5.39 71.98 0.39 1.35 16 4 C 0.17 4.04 2.23 44.99 0.10 4.14 16 5 H 0.09 2.51 7.37 -2.38 -0.02 2.49 16 6 N -0.73 -20.70 5.02 -457.82 -2.30 -23.00 16 7 C 0.70 27.24 8.09 179.05 1.45 28.69 16 8 O -0.63 -29.45 15.40 -3.08 -0.05 -29.50 16 9 N -0.74 -29.03 5.56 -478.53 -2.66 -31.69 16 10 C 0.16 7.75 5.61 86.38 0.48 8.24 16 11 C 0.03 1.35 5.09 29.85 0.15 1.50 16 12 C -0.55 -31.82 9.11 25.60 0.23 -31.59 16 13 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 14 C 0.01 0.37 5.46 84.65 0.46 0.84 16 15 N -0.93 -55.71 13.29 21.45 0.28 -55.43 16 16 Si 0.97 44.82 29.54 68.60 2.03 46.84 16 17 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 18 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 19 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 20 C 0.06 1.44 2.80 31.10 0.09 1.53 16 21 H 0.07 1.72 7.64 -2.39 -0.02 1.71 16 22 C -0.14 -2.20 5.65 31.61 0.18 -2.02 16 23 C -0.15 -2.35 7.09 31.61 0.22 -2.13 16 24 C 0.03 0.72 7.63 72.49 0.55 1.27 16 25 O -0.39 -12.76 10.33 -148.07 -1.53 -14.29 16 26 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.05 0.40 8.14 -2.38 -0.02 0.38 16 28 H 0.06 0.36 8.14 -2.38 -0.02 0.34 16 29 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.09 0.91 7.36 -2.39 -0.02 0.90 16 31 H 0.41 9.72 8.42 -92.71 -0.78 8.94 16 32 H 0.40 13.77 8.49 -92.72 -0.79 12.98 16 33 H 0.04 1.86 8.14 -2.38 -0.02 1.84 16 34 H 0.04 2.09 8.14 -2.39 -0.02 2.08 16 35 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 37 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 38 H 0.08 1.17 7.71 -2.39 -0.02 1.16 16 39 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 43 H 0.08 1.93 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -76.04 354.11 -0.66 -76.70 By element: Atomic # 1 Polarization: 25.33 SS G_CDS: -0.57 Total: 24.77 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: 5.56 Total: 13.32 kcal Atomic # 7 Polarization: -105.45 SS G_CDS: -4.67 Total: -110.12 kcal Atomic # 8 Polarization: -48.50 SS G_CDS: -3.01 Total: -51.51 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -76.04 -0.66 -76.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000434389350.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.085 kcal (2) G-P(sol) polarization free energy of solvation -76.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds