Wall clock time and date at job start Tue Mar 31 2020 03:05:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46902 * 1
3 3 C 1.46895 * 111.00207 * 2 1
4 4 C 1.50706 * 109.47182 * 66.04539 * 3 2 1
5 5 H 1.08005 * 119.99758 * 0.02562 * 4 3 2
6 6 C 1.37871 * 120.00102 * 180.02562 * 4 3 2
7 7 N 1.31516 * 120.00217 * 0.02562 * 6 4 3
8 8 Si 1.86800 * 119.99766 * 179.97438 * 6 4 3
9 9 H 1.48501 * 109.47057 * 179.97438 * 8 6 4
10 10 H 1.48500 * 109.47389 * 300.00068 * 8 6 4
11 11 H 1.48504 * 109.47102 * 60.00417 * 8 6 4
12 12 C 1.46904 * 111.00203 * 236.04597 * 2 1 3
13 13 C 1.53002 * 109.46969 * 293.95746 * 12 2 1
14 14 H 1.09000 * 109.47241 * 60.00171 * 13 12 2
15 15 O 1.42902 * 109.46952 * 299.99496 * 13 12 2
16 16 C 1.53005 * 109.46809 * 179.97438 * 13 12 2
17 17 N 1.46898 * 109.46725 * 184.99948 * 16 13 12
18 18 C 1.46897 * 110.99749 * 179.97438 * 17 16 13
19 19 H 1.08997 * 112.85517 * 333.30876 * 18 17 16
20 20 C 1.53791 * 113.61319 * 104.50454 * 18 17 16
21 21 C 1.53779 * 87.07832 * 139.98197 * 20 18 17
22 22 H 1.09006 * 113.60951 * 220.01634 * 21 20 18
23 23 O 1.42903 * 113.61630 * 89.11924 * 21 20 18
24 24 C 1.53777 * 87.08693 * 334.56674 * 21 20 18
25 25 C 1.53003 * 113.61467 * 270.88911 * 24 21 20
26 26 C 1.52998 * 113.61802 * 139.97944 * 24 21 20
27 27 H 1.09002 * 109.46967 * 60.00019 * 1 2 3
28 28 H 1.08996 * 109.46867 * 180.02562 * 1 2 3
29 29 H 1.08993 * 109.46727 * 299.99968 * 1 2 3
30 30 H 1.09001 * 109.47613 * 306.04885 * 3 2 1
31 31 H 1.09006 * 109.47521 * 186.04503 * 3 2 1
32 32 H 0.97001 * 119.99646 * 359.97438 * 7 6 4
33 33 H 1.09002 * 109.46768 * 53.95221 * 12 2 1
34 34 H 1.08994 * 109.47561 * 173.95362 * 12 2 1
35 35 H 0.96698 * 114.00008 * 300.00302 * 15 13 12
36 36 H 1.08996 * 109.46815 * 304.99747 * 16 13 12
37 37 H 1.08996 * 109.47178 * 64.99895 * 16 13 12
38 38 H 1.00900 * 111.00290 * 56.05018 * 17 16 13
39 39 H 1.08998 * 113.61195 * 254.53153 * 20 18 17
40 40 H 1.08996 * 113.60988 * 25.35046 * 20 18 17
41 41 H 0.96695 * 113.99930 * 79.50315 * 23 21 20
42 42 H 1.09002 * 109.46849 * 157.49638 * 25 24 21
43 43 H 1.08994 * 109.46774 * 277.49309 * 25 24 21
44 44 H 1.08995 * 109.47067 * 37.49505 * 25 24 21
45 45 H 1.09006 * 109.46878 * 322.51147 * 26 24 21
46 46 H 1.09005 * 109.46833 * 82.50696 * 26 24 21
47 47 H 1.08997 * 109.47755 * 202.50729 * 26 24 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9955 1.3714 0.0000
4 6 1.6370 2.0471 1.2985
5 1 1.0746 1.5112 2.0488
6 6 2.0268 3.3494 1.5285
7 7 2.7112 4.0022 0.6146
8 14 1.5818 4.1871 3.1377
9 1 2.1141 5.5735 3.1378
10 1 0.1045 4.2236 3.2849
11 1 2.1736 3.4302 4.2700
12 6 1.9955 -0.7660 -1.1376
13 6 1.6315 -2.2426 -0.9704
14 1 0.5472 -2.3475 -0.9324
15 8 2.2009 -2.7392 0.2426
16 6 2.1793 -3.0403 -2.1555
17 7 1.7287 -4.4350 -2.0571
18 6 2.2363 -5.2327 -3.1814
19 1 2.4277 -4.6348 -4.0724
20 6 3.4014 -6.1618 -2.8011
21 6 2.7529 -7.2178 -3.7117
22 1 2.7934 -8.2286 -3.3055
23 8 3.1882 -7.1468 -5.0709
24 6 1.4153 -6.5040 -3.4551
25 6 0.6674 -7.0267 -2.2269
26 6 0.5260 -6.4039 -4.6960
27 1 -0.3633 0.5138 -0.8900
28 1 -0.3633 -1.0276 0.0005
29 1 -0.3632 0.5138 0.8899
30 1 1.5612 1.9274 -0.8309
31 1 3.0798 1.3444 -0.1082
32 1 2.9419 3.5672 -0.2212
33 1 1.5611 -0.3872 -2.0628
34 1 3.0797 -0.6611 -1.1757
35 1 3.1652 -2.6771 0.2786
36 1 1.8143 -2.6053 -3.0859
37 1 3.2687 -3.0086 -2.1424
38 1 0.7226 -4.4870 -2.0025
39 1 4.3711 -5.8142 -3.1573
40 1 3.4122 -6.4394 -1.7472
41 1 4.0507 -7.5543 -5.2295
42 1 -0.0242 -6.2632 -1.8706
43 1 0.1106 -7.9244 -2.4955
44 1 1.3828 -7.2646 -1.4398
45 1 1.1463 -6.2221 -5.5738
46 1 -0.0229 -7.3366 -4.8258
47 1 -0.1789 -5.5817 -4.5726
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000516866970.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:05:18
Heat of formation + Delta-G solvation = -78.411146 kcal
Electronic energy + Delta-G solvation = -23421.320096 eV
Core-core repulsion = 20025.629767 eV
Total energy + Delta-G solvation = -3395.690329 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 286.204 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-40.57248 -38.16027 -36.10001 -35.45824 -33.63075 -32.70239 -30.72272 -29.37855
-27.67017 -26.81500 -26.02762 -23.95084 -23.08682 -22.41951 -21.44848 -20.37434
-18.71695 -17.38939 -16.77462 -16.54688 -16.04311 -15.53304 -15.42181 -14.97561
-14.63391 -14.35611 -13.93205 -13.82862 -13.62953 -13.36361 -12.97711 -12.76811
-12.59692 -12.46399 -12.30425 -12.19160 -11.92638 -11.70297 -11.33550 -11.33051
-11.19989 -10.91043 -10.79942 -10.71630 -10.62937 -10.37469 -10.22136 -10.05967
-10.01130 -9.50794 -8.62468 -8.50794 -8.36064 -7.28226 -6.35438 -4.03735
3.46250 3.49045 3.60890 3.67305 3.93169 4.12553 4.33973 4.50036
4.54968 4.67869 4.82910 4.85207 4.92965 5.09636 5.12347 5.24154
5.32777 5.40208 5.40976 5.44037 5.50942 5.57712 5.60341 5.65662
5.67042 5.69761 5.85471 5.87491 5.97222 6.11309 6.12409 6.17428
6.23186 6.34978 6.69046 6.92585 6.98416 7.09392 7.22125 7.28784
7.78893 7.98288 8.11170 8.34249 8.61238 8.88722 9.66848 11.03706
Molecular weight = 286.20amu
Principal moments of inertia in cm(-1)
A = 0.039832 B = 0.002623 C = 0.002590
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 702.789188 B =10673.646247 C =10809.282378
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.039 3.961
2 N -0.522 5.522
3 C 0.182 3.818
4 C -0.586 4.586
5 H 0.058 0.942
6 C 0.012 3.988
7 N -0.916 5.916
8 Si 1.073 2.927
9 H -0.283 1.283
10 H -0.288 1.288
11 H -0.287 1.287
12 C 0.022 3.978
13 C 0.119 3.881
14 H 0.091 0.909
15 O -0.535 6.535
16 C 0.026 3.974
17 N -0.664 5.664
18 C 0.073 3.927
19 H 0.072 0.928
20 C -0.156 4.156
21 C 0.084 3.916
22 H 0.068 0.932
23 O -0.550 6.550
24 C -0.079 4.079
25 C -0.122 4.122
26 C -0.135 4.135
27 H 0.007 0.993
28 H 0.048 0.952
29 H 0.075 0.925
30 H -0.022 1.022
31 H 0.018 0.982
32 H 0.265 0.735
33 H 0.026 0.974
34 H 0.069 0.931
35 H 0.368 0.632
36 H 0.034 0.966
37 H 0.074 0.926
38 H 0.340 0.660
39 H 0.067 0.933
40 H 0.098 0.902
41 H 0.379 0.621
42 H 0.066 0.934
43 H 0.055 0.945
44 H 0.065 0.935
45 H 0.067 0.933
46 H 0.054 0.946
47 H 0.051 0.949
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.934 -23.709 -10.524 25.957
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.110 4.110
2 N -0.245 5.245
3 C 0.057 3.943
4 C -0.624 4.624
5 H 0.076 0.924
6 C -0.191 4.191
7 N -0.553 5.553
8 Si 0.901 3.099
9 H -0.209 1.209
10 H -0.215 1.215
11 H -0.213 1.213
12 C -0.108 4.108
13 C 0.058 3.942
14 H 0.109 0.891
15 O -0.338 6.338
16 C -0.104 4.104
17 N -0.296 5.296
18 C -0.038 4.038
19 H 0.090 0.910
20 C -0.195 4.195
21 C 0.024 3.976
22 H 0.086 0.914
23 O -0.356 6.356
24 C -0.080 4.080
25 C -0.179 4.179
26 C -0.192 4.192
27 H 0.026 0.974
28 H 0.067 0.933
29 H 0.093 0.907
30 H -0.004 1.004
31 H 0.036 0.964
32 H 0.076 0.924
33 H 0.044 0.956
34 H 0.087 0.913
35 H 0.214 0.786
36 H 0.052 0.948
37 H 0.093 0.907
38 H 0.160 0.840
39 H 0.085 0.915
40 H 0.116 0.884
41 H 0.227 0.773
42 H 0.085 0.915
43 H 0.074 0.926
44 H 0.084 0.916
45 H 0.086 0.914
46 H 0.073 0.927
47 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges -1.337 -22.480 -8.742 24.158
hybrid contribution 0.236 -0.761 -2.620 2.739
sum -1.101 -23.241 -11.363 25.893
Atomic orbital electron populations
1.22233 0.88737 0.99290 1.00718 1.61933 1.06992 1.16552 1.39065
1.19857 0.94548 0.83004 0.96920 1.21978 1.38673 0.99620 1.02142
0.92397 1.25872 0.94461 0.94727 1.04004 1.70805 1.36760 1.39884
1.07812 0.83484 0.76051 0.76013 0.74353 1.20873 1.21482 1.21306
1.22760 1.00447 0.94300 0.93266 1.21836 0.98076 0.90523 0.83752
0.89141 1.86582 1.24865 1.84922 1.37461 1.22766 1.01109 0.88613
0.97880 1.60594 1.16229 1.09995 1.42766 1.23050 0.95932 0.92479
0.92301 0.91008 1.23709 0.97950 0.96952 1.00850 1.22746 0.95707
0.97044 0.82123 0.91400 1.86429 1.40442 1.82808 1.25920 1.22185
0.93634 0.95665 0.96476 1.21474 1.00090 1.00648 0.95692 1.21633
0.98962 1.01343 0.97303 0.97407 0.93343 0.90662 1.00442 0.96388
0.92447 0.95638 0.91279 0.78561 0.94784 0.90744 0.83983 0.91466
0.88402 0.77347 0.91514 0.92566 0.91583 0.91384 0.92669 0.93008
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.79 9.16 60.07 0.55 1.34 16
2 N -0.52 -11.58 4.62 -244.37 -1.13 -12.71 16
3 C 0.18 4.83 4.03 -4.98 -0.02 4.81 16
4 C -0.59 -17.01 8.51 -34.44 -0.29 -17.31 16
5 H 0.06 1.69 7.10 -52.48 -0.37 1.32 16
6 C 0.01 0.37 5.46 -17.82 -0.10 0.27 16
7 N -0.92 -28.33 13.65 55.43 0.76 -27.57 16
8 Si 1.07 25.75 29.90 -169.99 -5.08 20.66 16
9 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16
10 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16
11 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16
12 C 0.02 0.39 4.62 -3.82 -0.02 0.37 16
13 C 0.12 1.73 3.02 -26.73 -0.08 1.65 16
14 H 0.09 1.35 6.47 -51.93 -0.34 1.02 16
15 O -0.53 -8.64 13.15 -35.23 -0.46 -9.11 16
16 C 0.03 0.31 5.19 -3.82 -0.02 0.29 16
17 N -0.66 -7.15 5.96 -105.86 -0.63 -7.79 16
18 C 0.07 0.71 3.49 -66.89 -0.23 0.47 16
19 H 0.07 0.79 7.85 -51.93 -0.41 0.39 16
20 C -0.16 -1.37 7.36 -25.91 -0.19 -1.56 16
21 C 0.08 0.66 4.69 -25.92 -0.12 0.54 16
22 H 0.07 0.46 8.10 -51.93 -0.42 0.04 16
23 O -0.55 -4.38 12.12 -35.23 -0.43 -4.81 16
24 C -0.08 -0.67 1.26 -153.69 -0.19 -0.87 16
25 C -0.12 -0.95 8.47 37.16 0.31 -0.64 16
26 C -0.14 -1.17 9.04 37.16 0.34 -0.84 16
27 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16
28 H 0.05 0.85 6.30 -51.93 -0.33 0.53 16
29 H 0.07 1.66 6.86 -51.93 -0.36 1.30 16
30 H -0.02 -0.62 7.99 -51.93 -0.41 -1.03 16
31 H 0.02 0.50 7.80 -51.93 -0.40 0.10 16
32 H 0.27 8.18 7.22 -40.82 -0.29 7.88 16
33 H 0.03 0.44 8.12 -51.93 -0.42 0.02 16
34 H 0.07 1.21 7.93 -51.93 -0.41 0.79 16
35 H 0.37 5.07 9.05 45.56 0.41 5.48 16
36 H 0.03 0.40 8.13 -51.93 -0.42 -0.02 16
37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16
38 H 0.34 3.57 7.09 -39.29 -0.28 3.29 16
39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16
40 H 0.10 0.90 7.66 -51.93 -0.40 0.50 16
41 H 0.38 1.46 9.12 45.56 0.42 1.87 16
42 H 0.07 0.54 6.79 -51.93 -0.35 0.19 16
43 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16
44 H 0.07 0.53 7.34 -51.93 -0.38 0.15 16
45 H 0.07 0.66 6.96 -51.93 -0.36 0.30 16
46 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16
47 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16
LS Contribution 367.77 15.07 5.54 5.54
Total: -1.00 -33.16 367.77 -8.37 -41.52
By element:
Atomic # 1 Polarization: 12.57 SS G_CDS: -6.87 Total: 5.70 kcal
Atomic # 6 Polarization: -11.38 SS G_CDS: -0.07 Total: -11.45 kcal
Atomic # 7 Polarization: -47.07 SS G_CDS: -1.00 Total: -48.07 kcal
Atomic # 8 Polarization: -13.02 SS G_CDS: -0.89 Total: -13.91 kcal
Atomic # 14 Polarization: 25.75 SS G_CDS: -5.08 Total: 20.66 kcal
Total LS contribution 5.54 Total: 5.54 kcal
Total: -33.16 -8.37 -41.52 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000516866970.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -36.887 kcal
(2) G-P(sol) polarization free energy of solvation -33.155 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.043 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.369 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.524 kcal
(6) G-S(sol) free energy of system = (1) + (5) -78.411 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds