Wall clock time and date at job start Tue Mar 31 2020 03:05:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46902 * 1
3 3 C 1.46895 * 111.00207 * 2 1
4 4 C 1.50706 * 109.47182 * 66.04539 * 3 2 1
5 5 H 1.08005 * 119.99758 * 0.02562 * 4 3 2
6 6 C 1.37871 * 120.00102 * 180.02562 * 4 3 2
7 7 N 1.31516 * 120.00217 * 0.02562 * 6 4 3
8 8 Si 1.86800 * 119.99766 * 179.97438 * 6 4 3
9 9 H 1.48501 * 109.47057 * 179.97438 * 8 6 4
10 10 H 1.48500 * 109.47389 * 300.00068 * 8 6 4
11 11 H 1.48504 * 109.47102 * 60.00417 * 8 6 4
12 12 C 1.46904 * 111.00203 * 236.04597 * 2 1 3
13 13 C 1.53002 * 109.46969 * 293.95746 * 12 2 1
14 14 H 1.09000 * 109.47241 * 60.00171 * 13 12 2
15 15 O 1.42902 * 109.46952 * 299.99496 * 13 12 2
16 16 C 1.53005 * 109.46809 * 179.97438 * 13 12 2
17 17 N 1.46898 * 109.46725 * 184.99948 * 16 13 12
18 18 C 1.46897 * 110.99749 * 179.97438 * 17 16 13
19 19 H 1.08997 * 112.85517 * 333.30876 * 18 17 16
20 20 C 1.53791 * 113.61319 * 104.50454 * 18 17 16
21 21 C 1.53779 * 87.07832 * 139.98197 * 20 18 17
22 22 H 1.09006 * 113.60951 * 220.01634 * 21 20 18
23 23 O 1.42903 * 113.61630 * 89.11924 * 21 20 18
24 24 C 1.53777 * 87.08693 * 334.56674 * 21 20 18
25 25 C 1.53003 * 113.61467 * 270.88911 * 24 21 20
26 26 C 1.52998 * 113.61802 * 139.97944 * 24 21 20
27 27 H 1.09002 * 109.46967 * 60.00019 * 1 2 3
28 28 H 1.08996 * 109.46867 * 180.02562 * 1 2 3
29 29 H 1.08993 * 109.46727 * 299.99968 * 1 2 3
30 30 H 1.09001 * 109.47613 * 306.04885 * 3 2 1
31 31 H 1.09006 * 109.47521 * 186.04503 * 3 2 1
32 32 H 0.97001 * 119.99646 * 359.97438 * 7 6 4
33 33 H 1.09002 * 109.46768 * 53.95221 * 12 2 1
34 34 H 1.08994 * 109.47561 * 173.95362 * 12 2 1
35 35 H 0.96698 * 114.00008 * 300.00302 * 15 13 12
36 36 H 1.08996 * 109.46815 * 304.99747 * 16 13 12
37 37 H 1.08996 * 109.47178 * 64.99895 * 16 13 12
38 38 H 1.00900 * 111.00290 * 56.05018 * 17 16 13
39 39 H 1.08998 * 113.61195 * 254.53153 * 20 18 17
40 40 H 1.08996 * 113.60988 * 25.35046 * 20 18 17
41 41 H 0.96695 * 113.99930 * 79.50315 * 23 21 20
42 42 H 1.09002 * 109.46849 * 157.49638 * 25 24 21
43 43 H 1.08994 * 109.46774 * 277.49309 * 25 24 21
44 44 H 1.08995 * 109.47067 * 37.49505 * 25 24 21
45 45 H 1.09006 * 109.46878 * 322.51147 * 26 24 21
46 46 H 1.09005 * 109.46833 * 82.50696 * 26 24 21
47 47 H 1.08997 * 109.47755 * 202.50729 * 26 24 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9955 1.3714 0.0000
4 6 1.6370 2.0471 1.2985
5 1 1.0746 1.5112 2.0488
6 6 2.0268 3.3494 1.5285
7 7 2.7112 4.0022 0.6146
8 14 1.5818 4.1871 3.1377
9 1 2.1141 5.5735 3.1378
10 1 0.1045 4.2236 3.2849
11 1 2.1736 3.4302 4.2700
12 6 1.9955 -0.7660 -1.1376
13 6 1.6315 -2.2426 -0.9704
14 1 0.5472 -2.3475 -0.9324
15 8 2.2009 -2.7392 0.2426
16 6 2.1793 -3.0403 -2.1555
17 7 1.7287 -4.4350 -2.0571
18 6 2.2363 -5.2327 -3.1814
19 1 2.4277 -4.6348 -4.0724
20 6 3.4014 -6.1618 -2.8011
21 6 2.7529 -7.2178 -3.7117
22 1 2.7934 -8.2286 -3.3055
23 8 3.1882 -7.1468 -5.0709
24 6 1.4153 -6.5040 -3.4551
25 6 0.6674 -7.0267 -2.2269
26 6 0.5260 -6.4039 -4.6960
27 1 -0.3633 0.5138 -0.8900
28 1 -0.3633 -1.0276 0.0005
29 1 -0.3632 0.5138 0.8899
30 1 1.5612 1.9274 -0.8309
31 1 3.0798 1.3444 -0.1082
32 1 2.9419 3.5672 -0.2212
33 1 1.5611 -0.3872 -2.0628
34 1 3.0797 -0.6611 -1.1757
35 1 3.1652 -2.6771 0.2786
36 1 1.8143 -2.6053 -3.0859
37 1 3.2687 -3.0086 -2.1424
38 1 0.7226 -4.4870 -2.0025
39 1 4.3711 -5.8142 -3.1573
40 1 3.4122 -6.4394 -1.7472
41 1 4.0507 -7.5543 -5.2295
42 1 -0.0242 -6.2632 -1.8706
43 1 0.1106 -7.9244 -2.4955
44 1 1.3828 -7.2646 -1.4398
45 1 1.1463 -6.2221 -5.5738
46 1 -0.0229 -7.3366 -4.8258
47 1 -0.1789 -5.5817 -4.5726
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000516866970.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:05:17
Heat of formation + Delta-G solvation = -106.712557 kcal
Electronic energy + Delta-G solvation = -23422.547337 eV
Core-core repulsion = 20025.629767 eV
Total energy + Delta-G solvation = -3396.917570 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 286.204 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-41.26292 -39.53933 -37.42905 -36.44350 -34.84028 -34.53509 -31.47519 -30.68583
-28.76199 -28.30389 -27.46768 -25.51336 -24.01505 -23.38321 -22.78960 -21.95991
-19.40550 -18.93299 -18.06942 -17.56623 -17.28032 -16.65686 -16.29451 -16.12984
-15.84803 -15.77271 -15.62290 -15.19101 -14.84459 -14.33210 -14.19459 -13.85770
-13.65672 -13.42895 -13.26705 -13.20806 -13.13604 -12.94559 -12.92362 -12.56713
-12.55040 -12.51183 -12.38533 -11.92682 -11.90991 -11.71092 -11.46878 -11.16072
-10.91427 -10.70524 -10.59693 -10.43746 -9.37237 -9.10227 -8.69876 -6.40427
1.53098 1.61739 1.81473 2.54719 2.84470 3.07061 3.12801 3.36104
3.44606 3.65713 3.70569 3.80881 3.88804 4.07087 4.12427 4.23706
4.28090 4.33111 4.40177 4.50420 4.55134 4.57472 4.58800 4.67887
4.77599 4.79152 4.82796 4.91823 4.97892 4.98631 5.02721 5.04112
5.14342 5.18331 5.21426 5.46603 5.51937 5.75039 5.95542 6.07371
6.33990 6.37625 6.40232 6.61867 6.89363 6.96637 7.39863 8.68920
Molecular weight = 286.20amu
Principal moments of inertia in cm(-1)
A = 0.039832 B = 0.002623 C = 0.002590
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 702.789188 B =10673.646247 C =10809.282378
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.042 3.958
2 N -0.533 5.533
3 C 0.193 3.807
4 C -0.599 4.599
5 H 0.054 0.946
6 C -0.038 4.038
7 N -0.938 5.938
8 Si 1.121 2.879
9 H -0.282 1.282
10 H -0.269 1.269
11 H -0.270 1.270
12 C 0.022 3.978
13 C 0.133 3.867
14 H 0.092 0.908
15 O -0.551 6.551
16 C 0.039 3.961
17 N -0.664 5.664
18 C 0.068 3.932
19 H 0.059 0.941
20 C -0.153 4.153
21 C 0.090 3.910
22 H 0.083 0.917
23 O -0.565 6.565
24 C -0.078 4.078
25 C -0.119 4.119
26 C -0.132 4.132
27 H 0.009 0.991
28 H 0.080 0.920
29 H 0.054 0.946
30 H -0.045 1.045
31 H -0.001 1.001
32 H 0.253 0.747
33 H 0.030 0.970
34 H 0.067 0.933
35 H 0.378 0.622
36 H 0.038 0.962
37 H 0.076 0.924
38 H 0.343 0.657
39 H 0.066 0.934
40 H 0.095 0.905
41 H 0.396 0.604
42 H 0.063 0.937
43 H 0.067 0.933
44 H 0.063 0.937
45 H 0.055 0.945
46 H 0.062 0.938
47 H 0.050 0.950
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.500 -25.368 -10.126 27.355
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.106 4.106
2 N -0.257 5.257
3 C 0.067 3.933
4 C -0.637 4.637
5 H 0.072 0.928
6 C -0.235 4.235
7 N -0.576 5.576
8 Si 0.942 3.058
9 H -0.208 1.208
10 H -0.194 1.194
11 H -0.195 1.195
12 C -0.107 4.107
13 C 0.073 3.927
14 H 0.109 0.891
15 O -0.356 6.356
16 C -0.092 4.092
17 N -0.296 5.296
18 C -0.042 4.042
19 H 0.076 0.924
20 C -0.192 4.192
21 C 0.031 3.969
22 H 0.101 0.899
23 O -0.374 6.374
24 C -0.079 4.079
25 C -0.176 4.176
26 C -0.189 4.189
27 H 0.027 0.973
28 H 0.098 0.902
29 H 0.073 0.927
30 H -0.027 1.027
31 H 0.017 0.983
32 H 0.062 0.938
33 H 0.048 0.952
34 H 0.085 0.915
35 H 0.225 0.775
36 H 0.056 0.944
37 H 0.094 0.906
38 H 0.163 0.837
39 H 0.084 0.916
40 H 0.114 0.886
41 H 0.246 0.754
42 H 0.081 0.919
43 H 0.086 0.914
44 H 0.082 0.918
45 H 0.074 0.926
46 H 0.081 0.919
47 H 0.069 0.931
Dipole moment (debyes) X Y Z Total
from point charges -1.892 -24.186 -8.369 25.663
hybrid contribution 0.434 -0.312 -2.818 2.869
sum -1.458 -24.498 -11.188 26.971
Atomic orbital electron populations
1.22215 0.87607 1.01031 0.99742 1.61853 1.08123 1.14068 1.41610
1.19568 0.93307 0.85302 0.95160 1.22293 1.38395 1.00095 1.02907
0.92818 1.27444 0.93579 0.95831 1.06638 1.70937 1.38422 1.40201
1.08023 0.82883 0.77048 0.75109 0.70770 1.20787 1.19389 1.19507
1.22875 1.00239 0.95768 0.91844 1.21692 0.98105 0.88489 0.84456
0.89067 1.86548 1.25900 1.84860 1.38288 1.22549 1.01038 0.89027
0.96546 1.60600 1.16472 1.09168 1.43345 1.23076 0.97030 0.92665
0.91436 0.92352 1.23676 0.97540 0.97020 1.00922 1.22693 0.94806
0.97436 0.81997 0.89878 1.86394 1.41872 1.83247 1.25868 1.22210
0.94004 0.94995 0.96695 1.21452 0.99961 1.00991 0.95189 1.21592
0.98783 1.01714 0.96855 0.97285 0.90165 0.92712 1.02747 0.98268
0.93824 0.95162 0.91459 0.77478 0.94417 0.90599 0.83741 0.91575
0.88643 0.75357 0.91853 0.91421 0.91789 0.92639 0.91878 0.93104
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 1.70 9.16 127.69 1.17 2.87 16
2 N -0.53 -23.63 4.62 -927.04 -4.28 -27.91 16
3 C 0.19 10.50 4.03 85.56 0.34 10.84 16
4 C -0.60 -35.17 8.51 25.60 0.22 -34.95 16
5 H 0.05 3.14 7.10 -2.91 -0.02 3.12 16
6 C -0.04 -2.23 5.46 84.65 0.46 -1.77 16
7 N -0.94 -58.93 13.65 21.45 0.29 -58.63 16
8 Si 1.12 51.25 29.90 68.60 2.05 53.30 16
9 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16
10 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16
11 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16
12 C 0.02 0.76 4.62 86.30 0.40 1.16 16
13 C 0.13 3.68 3.02 30.60 0.09 3.77 16
14 H 0.09 2.54 6.47 -2.39 -0.02 2.52 16
15 O -0.55 -17.00 13.15 -148.98 -1.96 -18.96 16
16 C 0.04 0.86 5.19 86.31 0.45 1.31 16
17 N -0.66 -13.28 5.96 -488.84 -2.91 -16.19 16
18 C 0.07 1.24 3.49 45.45 0.16 1.39 16
19 H 0.06 1.24 7.85 -2.39 -0.02 1.22 16
20 C -0.15 -2.44 7.36 31.12 0.23 -2.21 16
21 C 0.09 1.25 4.69 31.12 0.15 1.40 16
22 H 0.08 0.92 8.10 -2.38 -0.02 0.90 16
23 O -0.57 -8.05 12.12 -148.98 -1.81 -9.86 16
24 C -0.08 -1.20 1.26 -51.65 -0.07 -1.27 16
25 C -0.12 -1.62 8.47 71.98 0.61 -1.01 16
26 C -0.13 -2.10 9.04 71.98 0.65 -1.45 16
27 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16
28 H 0.08 2.69 6.30 -2.39 -0.02 2.67 16
29 H 0.05 2.40 6.86 -2.39 -0.02 2.38 16
30 H -0.04 -2.60 7.99 -2.39 -0.02 -2.62 16
31 H 0.00 -0.04 7.80 -2.38 -0.02 -0.06 16
32 H 0.25 16.07 7.22 -92.71 -0.67 15.40 16
33 H 0.03 1.03 8.12 -2.39 -0.02 1.01 16
34 H 0.07 2.34 7.93 -2.39 -0.02 2.32 16
35 H 0.38 9.95 9.05 -74.06 -0.67 9.28 16
36 H 0.04 0.83 8.13 -2.39 -0.02 0.81 16
37 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16
38 H 0.34 6.60 7.09 -89.69 -0.64 5.96 16
39 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16
40 H 0.10 1.59 7.66 -2.39 -0.02 1.57 16
41 H 0.40 2.33 9.12 -74.06 -0.68 1.65 16
42 H 0.06 0.91 6.79 -2.39 -0.02 0.89 16
43 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16
44 H 0.06 0.91 7.34 -2.39 -0.02 0.89 16
45 H 0.05 1.02 6.96 -2.38 -0.02 1.01 16
46 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16
47 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16
Total: -1.00 -70.72 367.77 -4.67 -75.39
By element:
Atomic # 1 Polarization: 23.70 SS G_CDS: -0.92 Total: 22.78 kcal
Atomic # 6 Polarization: -24.78 SS G_CDS: 4.86 Total: -19.91 kcal
Atomic # 7 Polarization: -95.84 SS G_CDS: -6.90 Total: -102.74 kcal
Atomic # 8 Polarization: -25.05 SS G_CDS: -3.77 Total: -28.82 kcal
Atomic # 14 Polarization: 51.25 SS G_CDS: 2.05 Total: 53.30 kcal
Total: -70.72 -4.67 -75.39 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000516866970.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -31.321 kcal
(2) G-P(sol) polarization free energy of solvation -70.723 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.044 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.669 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.392 kcal
(6) G-S(sol) free energy of system = (1) + (5) -106.713 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds